Home
About
Browse
Covid-19
Organism Classification
Alphafold Collection
Indian Data
Contact
Search Type
PDB Id
Uniprot Id
Source Organism
Host Organism
Protein Name
Method
Summary
Structure Feature
Experiment
Ligands & Environment
2P8W
ELECTRON MICROSCOPY
Sample
80S ribosome
Specimen Preperation
Sample Aggregation State
PARTICLE
Vitrification Instrument
FEI VITROBOT MARK I
Cryogen Name
ETHANE
Sample Vitrification Details
rapid-freezing in liquid ethane
3D Reconstruction
Reconstruction Method
SINGLE PARTICLE
Number of Particles
93807
Reported Resolution (Å)
11.3
Resolution Method
?
Other Details
SPIDER package
Refinement Type
Symmetry Type
POINT
Map-Model Fitting and Refinement
ID
1
Refinement Space
REAL
Refinement Protocol
RIGID BODY FIT
Refinement Target
Maximization of correlation-coefficient
Overall B Value
15
Fitting Procedure
?
Details
METHOD--Real-space refinement using rigid bodies REFINEMENT PROTOCOL--TNT implementation of RSRef
Data Acquisition
Detector Type
KODAK SO-163 FILM
Electron Dose (electrons/Å
2
)
25
Imaging Experiment
Date of Experiment
2005-07-07
Temprature (Kelvin)
Microscope Model
FEI TECNAI F30
Minimum Defocus (nm)
1000
Maximum Defocus (nm)
4200
Minimum Tilt Angle (degrees)
0
Maximum Tilt Angle (degrees)
0
Nominal CS
2.26
Imaging Mode
BRIGHT FIELD
Specimen Holder Model
?
Nominal Magnification
39000
Calibrated Magnification
37642
Source
FIELD EMISSION GUN
Acceleration Voltage (kV)
300
Imaging Details
?
Imaging Experiment
Task
Software Package
Version
MODEL FITTING
RSRef
?
RECONSTRUCTION
SPIDER
?
Image Processing
CTF Correction Type
CTF Correction Details
Number of Particles Selected
Particle Selection Details
.
CTF correction of 3D-maps by Wiener filtration