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PDB Id
Uniprot Id
Source Organism
Host Organism
Protein Name
Method
Summary
Structure Feature
Experiment
Ligands & Environment
2OF6
pdb_00002of6
10.2210/pdb2of6/pdb
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FASTA
PDB
MMCIF
Binary MMCIF
XML
Structure Factors
Full Validation Report
Validation File (XML)
Validation File (CIF)
FASTA Zipped(.gz)
PDB Zipped(.gz)
MMCIF Zipped(.gz)
Binary MMCIF Zipped(.gz)
Structure Factors Zipped(.gz)
Validation File Zipped (.xml.gz)
Validation File Zipped (.cif.gz)
ELECTRON MICROSCOPY
Sample
immature West Nile
Specimen Preperation
Sample Aggregation State
PARTICLE
Vitrification Instrument
?
Cryogen Name
ETHANE
Sample Vitrification Details
rapidly frozen by plunging into an ethane slush
3D Reconstruction
Reconstruction Method
SINGLE PARTICLE
Number of Particles
341
Reported Resolution (Å)
24.
Resolution Method
?
Other Details
?
Refinement Type
Symmetry Type
POINT
Map-Model Fitting and Refinement
ID
1
Refinement Space
REAL
Refinement Protocol
RIGID BODY FIT
Refinement Target
best fit using criterial described in paper by Rossmann et al., Journal of structural biology 136, 190-200 (2001)
Overall B Value
?
Fitting Procedure
?
Details
METHOD--Three E molecules were fitted consecutively REFINEMENT PROTOCOL--rigid body
Data Acquisition
Detector Type
KODAK SO-163 FILM
Electron Dose (electrons/Å
2
)
22
Imaging Experiment
Date of Experiment
2006-03-15
Temprature (Kelvin)
Microscope Model
FEI/PHILIPS CM300FEG/T
Minimum Defocus (nm)
1300
Maximum Defocus (nm)
3100
Minimum Tilt Angle (degrees)
0
Maximum Tilt Angle (degrees)
0
Nominal CS
2.00
Imaging Mode
BRIGHT FIELD
Specimen Holder Model
?
Nominal Magnification
45000
Calibrated Magnification
47400
Source
FIELD EMISSION GUN
Acceleration Voltage (kV)
300
Imaging Details
?
Imaging Experiment
Task
Software Package
Version
MODEL FITTING
EMfit
?
RECONSTRUCTION
EM3DR
?
RECONSTRUCTION
PFT
?
RECONSTRUCTION
POR
?
Image Processing
CTF Correction Type
CTF Correction Details
Number of Particles Selected
Particle Selection Details
.
CTF correction of each particle