SOLUTION NMR

NMR Experiment
Experiment Type Sample Contents Ionic Strength Solvent pH Pressure Temprature (K)
1 2D 1H-1H NOESY 0.1-1 mM DNA (5'-D(*CP*TP*GP*GP*GP*CP*GP*GP*GP*AP*CP*TP*GP*GP*GP*GP*AP*GP*TP*GP*GP*T)-3')-1, 90% H2O/10% D2O 90 90% H2O/10% D2O 7.0 ambient 298
2 2D 1H-1H TOCSY 0.1-1 mM DNA (5'-D(*CP*TP*GP*GP*GP*CP*GP*GP*GP*AP*CP*TP*GP*GP*GP*GP*AP*GP*TP*GP*GP*T)-3')-1, 90% H2O/10% D2O 90 90% H2O/10% D2O 7.0 ambient 298
3 2D 1H-13C HSQC aliphatic 0.1-1 mM DNA (5'-D(*CP*TP*GP*GP*GP*CP*GP*GP*GP*AP*CP*TP*GP*GP*GP*GP*AP*GP*TP*GP*GP*T)-3')-1, 90% H2O/10% D2O 90 90% H2O/10% D2O 7.0 ambient 298
4 1D JR-HMQC 0.1-1 mM DNA (5'-D(*CP*TP*GP*GP*GP*CP*GP*GP*GP*AP*CP*TP*GP*GP*GP*GP*AP*GP*TP*GP*GP*T)-3')-1, 90% H2O/10% D2O 90 90% H2O/10% D2O 7.0 ambient 298
NMR Spectrometer Information
Spectrometer Manufacturer Model Field Strength
NMR Refinement
Method Details Software
distance geometry, DGSA-distance geometry simulated annealing, simulated annealing, molecular dynamics ? 1
NMR Ensemble Information
Conformer Selection Criteria structures with the lowest energy
Conformers Calculated Total Number 100
Conformers Submitted Total Number 10
Representative Model 1 (lowest energy)
Computation: NMR Software
# Classification Version Software Name Author
1 chemical shift assignment ? Sparky Goddard
2 data analysis ? Sparky Goddard
3 peak picking ? Sparky Goddard
4 collection ? TopSpin Bruker Biospin
5 geometry optimization ? X-PLOR NIH Schwieters, Kuszewski, Tjandra and Clore
6 structure solution ? X-PLOR NIH Schwieters, Kuszewski, Tjandra and Clore
7 refinement ? Amber Case, Darden, Cheatham, III, Simmerling, Wang, Duke, Luo, ... and Kollman
8 structure solution ? Amber Case, Darden, Cheatham, III, Simmerling, Wang, Duke, Luo, ... and Kollman
9 refinement ? X-PLOR NIH ?