SOLUTION NMR

NMR Experiment
Experiment Type Sample Contents Ionic Strength Solvent pH Pressure Temprature (K)
1 2D 1H-15N HSQC 0.6 mM [U-100% 13C; U-100% 15N] KR150.020, 0.02 % NaN3, 10 mM DTT, 100 mM NaCL, 10 % D2O, 50 uM DSS, 10 mM TRIS-HCl, 0.3 mM DNA (5'-D(*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*G)-3'), 90% H2O/10% D2O ? 90% H2O/10% D2O 7.5 ambient 298
2 2D 1H-13C HSQC 0.6 mM [U-100% 13C; U-100% 15N] KR150.020, 0.02 % NaN3, 10 mM DTT, 100 mM NaCL, 10 % D2O, 50 uM DSS, 10 mM TRIS-HCl, 0.3 mM DNA (5'-D(*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*G)-3'), 90% H2O/10% D2O ? 90% H2O/10% D2O 7.5 ambient 298
3 3D HNCO 0.6 mM [U-100% 13C; U-100% 15N] KR150.020, 0.02 % NaN3, 10 mM DTT, 100 mM NaCL, 10 % D2O, 50 uM DSS, 10 mM TRIS-HCl, 0.3 mM DNA (5'-D(*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*G)-3'), 90% H2O/10% D2O ? 90% H2O/10% D2O 7.5 ambient 298
4 3D HNCA 0.6 mM [U-100% 13C; U-100% 15N] KR150.020, 0.02 % NaN3, 10 mM DTT, 100 mM NaCL, 10 % D2O, 50 uM DSS, 10 mM TRIS-HCl, 0.3 mM DNA (5'-D(*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*G)-3'), 90% H2O/10% D2O ? 90% H2O/10% D2O 7.5 ambient 298
5 3D 1H-13C NOESY aliphatic 0.6 mM [U-100% 13C; U-100% 15N] KR150.020, 0.02 % NaN3, 10 mM DTT, 100 mM NaCL, 10 % D2O, 50 uM DSS, 10 mM TRIS-HCl, 0.3 mM DNA (5'-D(*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*G)-3'), 90% H2O/10% D2O ? 90% H2O/10% D2O 7.5 ambient 298
6 3D 1H-13C NOESY aromatic 0.6 mM [U-100% 13C; U-100% 15N] KR150.020, 0.02 % NaN3, 10 mM DTT, 100 mM NaCL, 10 % D2O, 50 uM DSS, 10 mM TRIS-HCl, 0.3 mM DNA (5'-D(*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*G)-3'), 90% H2O/10% D2O ? 90% H2O/10% D2O 7.5 ambient 298
7 3D 1H-15N NOESY 0.6 mM [U-100% 13C; U-100% 15N] KR150.020, 0.02 % NaN3, 10 mM DTT, 100 mM NaCL, 10 % D2O, 50 uM DSS, 10 mM TRIS-HCl, 0.3 mM DNA (5'-D(*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*G)-3'), 90% H2O/10% D2O ? 90% H2O/10% D2O 7.5 ambient 298
8 3D-13C,15N_X-filt-13C,15N-editedNOESY 0.6 mM [U-100% 13C; U-100% 15N] KR150.020, 0.02 % NaN3, 10 mM DTT, 100 mM NaCL, 10 % D2O, 50 uM DSS, 10 mM TRIS-HCl, 0.3 mM DNA (5'-D(*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*G)-3'), 90% H2O/10% D2O ? 90% H2O/10% D2O 7.5 ambient 298
9 3D HN(CA)CO 0.6 mM [U-100% 13C; U-100% 15N] KR150.020, 0.02 % NaN3, 10 mM DTT, 100 mM NaCL, 10 % D2O, 50 uM DSS, 10 mM TRIS-HCl, 0.3 mM DNA (5'-D(*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*G)-3'), 90% H2O/10% D2O ? 90% H2O/10% D2O 7.5 ambient 298
10 1H-15N Hetnoe 0.6 mM [U-100% 13C; U-100% 15N] KR150.020, 0.02 % NaN3, 10 mM DTT, 100 mM NaCL, 10 % D2O, 50 uM DSS, 10 mM TRIS-HCl, 0.3 mM DNA (5'-D(*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*G)-3'), 90% H2O/10% D2O ? 90% H2O/10% D2O 7.5 ambient 298
11 1D T1 0.6 mM [U-100% 13C; U-100% 15N] KR150.020, 0.02 % NaN3, 10 mM DTT, 100 mM NaCL, 10 % D2O, 50 uM DSS, 10 mM TRIS-HCl, 0.3 mM DNA (5'-D(*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*G)-3'), 90% H2O/10% D2O ? 90% H2O/10% D2O 7.5 ambient 298
12 1D T2(cpmg) 0.6 mM [U-100% 13C; U-100% 15N] KR150.020, 0.02 % NaN3, 10 mM DTT, 100 mM NaCL, 10 % D2O, 50 uM DSS, 10 mM TRIS-HCl, 0.3 mM DNA (5'-D(*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*G)-3'), 90% H2O/10% D2O ? 90% H2O/10% D2O 7.5 ambient 298
13 2D 1H-1H NOESY 0.6 mM [U-100% 13C; U-100% 15N] KR150.020, 0.02 % NaN3, 10 mM DTT, 100 mM NaCL, 10 % D2O, 50 uM DSS, 10 mM TRIS-HCl, 0.3 mM DNA (5'-D(*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*G)-3'), 90% H2O/10% D2O ? 90% H2O/10% D2O 7.5 ambient 298
NMR Spectrometer Information
Spectrometer Manufacturer Model Field Strength
1 Bruker AVANCE 800
NMR Refinement
Method Details Software
restrained molecular dynamics RESTRAINED MD IN WATER BATH, OPLSX, NCS SYMMETRY, C2 SYMMETRY WITHIN HADDOCK INTERFACE 1
NMR Ensemble Information
Conformer Selection Criteria structures with the lowest energy
Conformers Calculated Total Number 200
Conformers Submitted Total Number 20
Representative Model 1 (lowest energy)
Computation: NMR Software
# Classification Version Software Name Author
1 refinement ? CNS Brunger, Adams, Clore, Gros, Nilges and Read
2 structure solution ? CNS Brunger, Adams, Clore, Gros, Nilges and Read
3 geometry optimization ? CNS Brunger, Adams, Clore, Gros, Nilges and Read
4 refinement 3.0 CYANA Guntert, Mumenthaler and Wuthrich
5 geometry optimization 3.0 CYANA Guntert, Mumenthaler and Wuthrich
6 structure solution 3.0 CYANA Guntert, Mumenthaler and Wuthrich
7 processing ? NMRPipe Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
8 collection ? TopSpin Bruker Biospin
9 collection ? VnmrJ Varian
10 chemical shift assignment ? PINE Bahrami, Markley, Assadi, and Eghbalnia
11 data analysis ? Sparky Goddard
12 geometry optimization ? TALOS+ Shen, Cornilescu, Delaglio and Bax
13 geometry optimization ? PALES Zweckstetter, Bax
14 structure validation ? PSVS Bhattacharya, Montelione
15 refinement ? HADDOCK Bonvin A. M. J. J.
16 structure solution ? HADDOCK Bonvin A. M. J. J.
17 geometry optimization ? HADDOCK Bonvin A. M. J. J.