SOLUTION NMR

NMR Experiment
Experiment Type Sample Contents Ionic Strength Solvent pH Pressure Temprature (K)
1 2D 1H-15N HSQC-TROSY 10 % lyso myristoyl phosphatidylglycerol, 10 % [U-2H] D2O, 100 mM imidazole, 250 uM [U-100% 15N] APP_C99, 1 mM EDTA, 90% H2O/10% D2O ? 90% H2O/10% D2O 6.5 ambient 318
2 3D HNCA 10 % lyso myristoyl phosphatidylglycerol, 10 % [U-2H] D2O, 100 mM imidazole, 250 uM [U-100% 15N] APP_C99, 1 mM EDTA, 90% H2O/10% D2O ? 90% H2O/10% D2O 6.5 ambient 318
3 3D HNCACB 10 % lyso myristoyl phosphatidylglycerol, 10 % [U-2H] D2O, 100 mM imidazole, 250 uM [U-100% 15N] APP_C99, 1 mM EDTA, 90% H2O/10% D2O ? 90% H2O/10% D2O 6.5 ambient 318
4 3D HN(CO)CA 10 % lyso myristoyl phosphatidylglycerol, 10 % [U-2H] D2O, 100 mM imidazole, 250 uM [U-100% 15N] APP_C99, 1 mM EDTA, 90% H2O/10% D2O ? 90% H2O/10% D2O 6.5 ambient 318
5 3D HN(COCA)CB 10 % lyso myristoyl phosphatidylglycerol, 10 % [U-2H] D2O, 100 mM imidazole, 250 uM [U-100% 15N] APP_C99, 1 mM EDTA, 90% H2O/10% D2O ? 90% H2O/10% D2O 6.5 ambient 318
6 3D HNCO 10 % lyso myristoyl phosphatidylglycerol, 10 % [U-2H] D2O, 100 mM imidazole, 250 uM [U-100% 15N] APP_C99, 1 mM EDTA, 90% H2O/10% D2O ? 90% H2O/10% D2O 6.5 ambient 318
7 3D gnoesyNhsqc 10 % lyso myristoyl phosphatidylglycerol, 10 % [U-2H] D2O, 100 mM imidazole, 250 uM [U-100% 15N] APP_C99, 1 mM EDTA, 90% H2O/10% D2O ? 90% H2O/10% D2O 6.5 ambient 318
NMR Spectrometer Information
Spectrometer Manufacturer Model Field Strength
NMR Refinement
Method Details Software
molecular dynamics, simulated annealing RESTRAINED MOLECULAR DYNAMICS WITH SIMULATED ANNEALING, FOLLOWED BY POWELL ENERGY MINIMIZATION 1
NMR Ensemble Information
Conformer Selection Criteria structures with the lowest energy
Conformers Calculated Total Number 100
Conformers Submitted Total Number 30
Representative Model 1 (closest to the average)
Computation: NMR Software
# Classification Version Software Name Author
1 structure solution 2.24 X-PLOR NIH Schwieters, Kuszewski, Tjandra and Clore
2 refinement 2.24 X-PLOR NIH Schwieters, Kuszewski, Tjandra and Clore
3 data analysis Linux9 NMRDraw Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
4 data analysis 3.114 Sparky Goddard
5 chemical shift assignment 3.114 Sparky Goddard
6 peak picking 3.114 Sparky Goddard
7 processing Linux9 NMRPipe Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
8 geometry optimization Linux9 TALOS Cornilescu, Delaglio and Bax
9 structure solution Linux9 TALOS Cornilescu, Delaglio and Bax
10 data analysis 3.5.4 ProcheckNMR Laskowski and MacArthur
11 structure solution 3.5.4 ProcheckNMR Laskowski and MacArthur
12 collection 3 TopSpin Bruker Biospin