SOLUTION NMR

NMR Experiment
Experiment Type Sample Contents Ionic Strength Solvent pH Pressure Temprature (K)
1 2D 1H-15N HSQC 5% D2O, 10 mM [U-99% 2H] sodium acetate, 0.5-1 mM [U-98% 13C; U-98% 15N] IGF2R, 100 uM EDTA, 95% H2O/5% D2O 0 95% H2O/5% D2O 4.2 ambient 310
2 2D 1H-13C HSQC 5% D2O, 10 mM [U-99% 2H] sodium acetate, 0.5-1 mM [U-98% 13C; U-98% 15N] IGF2R, 100 uM EDTA, 95% H2O/5% D2O 0 95% H2O/5% D2O 4.2 ambient 310
3 3D CBCA(CO)NH 5% D2O, 10 mM [U-99% 2H] sodium acetate, 0.5-1 mM [U-98% 13C; U-98% 15N] IGF2R, 100 uM EDTA, 95% H2O/5% D2O 0 95% H2O/5% D2O 4.2 ambient 310
4 3D CBCA(CO)NH 5% D2O, 10 mM [U-99% 2H] sodium acetate, 0.5-1 mM [U-98% 13C; U-98% 15N] IGF2R, 100 uM EDTA, 95% H2O/5% D2O 0 95% H2O/5% D2O 4.2 ambient 310
5 3D C(CO)NH 5% D2O, 10 mM [U-99% 2H] sodium acetate, 0.5-1 mM [U-98% 13C; U-98% 15N] IGF2R, 100 uM EDTA, 95% H2O/5% D2O 0 95% H2O/5% D2O 4.2 ambient 310
6 3D HNCO 5% D2O, 10 mM [U-99% 2H] sodium acetate, 0.5-1 mM [U-98% 13C; U-98% 15N] IGF2R, 100 uM EDTA, 95% H2O/5% D2O 0 95% H2O/5% D2O 4.2 ambient 310
7 3D HNCA 5% D2O, 10 mM [U-99% 2H] sodium acetate, 0.5-1 mM [U-98% 13C; U-98% 15N] IGF2R, 100 uM EDTA, 95% H2O/5% D2O 0 95% H2O/5% D2O 4.2 ambient 310
8 3D HNCACB 5% D2O, 10 mM [U-99% 2H] sodium acetate, 0.5-1 mM [U-98% 13C; U-98% 15N] IGF2R, 100 uM EDTA, 95% H2O/5% D2O 0 95% H2O/5% D2O 4.2 ambient 310
9 3D HN(CO)CA 5% D2O, 10 mM [U-99% 2H] sodium acetate, 0.5-1 mM [U-98% 13C; U-98% 15N] IGF2R, 100 uM EDTA, 95% H2O/5% D2O 0 95% H2O/5% D2O 4.2 ambient 310
10 3D 1H-15N NOESY 5% D2O, 10 mM [U-99% 2H] sodium acetate, 0.5-1 mM [U-98% 13C; U-98% 15N] IGF2R, 100 uM EDTA, 95% H2O/5% D2O 0 95% H2O/5% D2O 4.2 ambient 310
11 3D 1H-13C NOESY 5% D2O, 10 mM [U-99% 2H] sodium acetate, 0.5-1 mM [U-98% 13C; U-98% 15N] IGF2R, 100 uM EDTA, 95% H2O/5% D2O 0 95% H2O/5% D2O 4.2 ambient 310
12 3D HCCH-TOCSY 5% D2O, 10 mM [U-99% 2H] sodium acetate, 0.5-1 mM [U-98% 13C; U-98% 15N] IGF2R, 100 uM EDTA, 95% H2O/5% D2O 0 95% H2O/5% D2O 4.2 ambient 310
13 3D H(CCO)NH 5% D2O, 10 mM [U-99% 2H] sodium acetate, 0.5-1 mM [U-98% 13C; U-98% 15N] IGF2R, 100 uM EDTA, 95% H2O/5% D2O 0 95% H2O/5% D2O 4.2 ambient 310
NMR Spectrometer Information
Spectrometer Manufacturer Model Field Strength
1 Varian VNMRS 600
NMR Refinement
Method Details Software
simulated annealing, simulated annealing ARIA2.2 protocol. Cool_1 and cool_2 steps increased to 40K and cool_2, ARIA2.2 water refinement modified with RECOORD water refinement parameters 1
NMR Ensemble Information
Conformer Selection Criteria structures with the lowest energy
Conformers Calculated Total Number 200
Conformers Submitted Total Number 20
Representative Model 1 (lowest energy)
Computation: NMR Software
# Classification Version Software Name Author
1 collection ? VnmrJ Varian
2 chemical shift assignment 2.13 Analysis CCPN
3 data analysis 2.13 Analysis CCPN
4 refinement ? CNS Brunger, Adams, Clore, Gros, Nilges and Read
5 structure solution ? CNS Brunger, Adams, Clore, Gros, Nilges and Read
6 processing ? NMRPipe Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
7 geometry optimization ? TALOS Cornilescu, Delaglio and Bax
8 refinement r765 iCing Vuister, Doreleijers, Sousa da Silva
9 refinement 2.2 ARIA Linge, O'Donoghue and Nilges
10 structure solution 2.2 ARIA Linge, O'Donoghue and Nilges