SOLUTION NMR

NMR Experiment
Experiment Type Sample Contents Ionic Strength Solvent pH Pressure Temprature (K)
1 2D 1H-15N HSQC 1.2mM [U-100% 13C; U-100% 15N] Protein S100-A13, 1.2mM Amlexanox-2, 90% H2O/10% D2O 0.1 90% H2O/10% D2O 5.6 ambient 298
2 2D 1H-13C HSQC 1.2mM [U-100% 13C; U-100% 15N] Protein S100-A13, 1.2mM Amlexanox-2, 90% H2O/10% D2O 0.1 90% H2O/10% D2O 5.6 ambient 298
3 2D 1H-1H NOESY 1.2mM [U-100% 13C; U-100% 15N] Protein S100-A13, 1.2mM Amlexanox-2, 90% H2O/10% D2O 0.1 90% H2O/10% D2O 5.6 ambient 298
4 3D CBCA(CO)NH 1.2mM [U-100% 13C; U-100% 15N] Protein S100-A13, 1.2mM Amlexanox-2, 90% H2O/10% D2O 0.1 90% H2O/10% D2O 5.6 ambient 298
5 3D C(CO)NH 1.2mM [U-100% 13C; U-100% 15N] Protein S100-A13, 1.2mM Amlexanox-2, 90% H2O/10% D2O 0.1 90% H2O/10% D2O 5.6 ambient 298
6 3D HNCO 1.2mM [U-100% 13C; U-100% 15N] Protein S100-A13, 1.2mM Amlexanox-2, 90% H2O/10% D2O 0.1 90% H2O/10% D2O 5.6 ambient 298
7 3D HNCA 1.2mM [U-100% 13C; U-100% 15N] Protein S100-A13, 1.2mM Amlexanox-2, 90% H2O/10% D2O 0.1 90% H2O/10% D2O 5.6 ambient 298
8 3D HBHA(CO)NH 1.2mM [U-100% 13C; U-100% 15N] Protein S100-A13, 1.2mM Amlexanox-2, 90% H2O/10% D2O 0.1 90% H2O/10% D2O 5.6 ambient 298
9 3D H(CCO)NH 1.2mM [U-100% 13C; U-100% 15N] Protein S100-A13, 1.2mM Amlexanox-2, 90% H2O/10% D2O 0.1 90% H2O/10% D2O 5.6 ambient 298
10 3D HCCH-TOCSY 1.2mM [U-100% 13C; U-100% 15N] Protein S100-A13, 1.2mM Amlexanox-2, 90% H2O/10% D2O 0.1 90% H2O/10% D2O 5.6 ambient 298
11 3D 1H-15N NOESY 1.2mM [U-100% 13C; U-100% 15N] Protein S100-A13, 1.2mM Amlexanox-2, 90% H2O/10% D2O 0.1 90% H2O/10% D2O 5.6 ambient 298
12 3D 1H-13C NOESY 1.2mM [U-100% 13C; U-100% 15N] Protein S100-A13, 1.2mM Amlexanox-2, 90% H2O/10% D2O 0.1 90% H2O/10% D2O 5.6 ambient 298
13 3D 13C-filter NOESY 1.2mM [U-100% 13C; U-100% 15N] Protein S100-A13, 1.2mM Amlexanox-2, 90% H2O/10% D2O 0.1 90% H2O/10% D2O 5.6 ambient 298
NMR Spectrometer Information
Spectrometer Manufacturer Model Field Strength
1 Varian INOVA 700
NMR Refinement
Method Details Software
simulated annealing, DGSA-distance geometry simulated annealing,distance geometry,simulated annealing ARIA/CNS 1
NMR Ensemble Information
Conformer Selection Criteria structures with the least restraint violations
Conformers Calculated Total Number 200
Conformers Submitted Total Number 18
Representative Model 1 (fewest violations)
Computation: NMR Software
# Classification Version Software Name Author
1 structure solution 2.2 ARIA Linge, O'Donoghue, Nilges
2 peak picking 2.2 ARIA Linge, O'Donoghue, Nilges
3 chemical shift assignment ? Sparky Goddard
4 chemical shift calculation ? Sparky Goddard
5 collection ? VnmrJ Varian
6 processing ? VnmrJ Varian
7 data analysis ? TALOS Cornilescu, Delaglio and Bax
8 docking the aria calculated protein with ligand (amlexanox) 2.0 HADDOCK Dr. A.M.J.J. Bonvin
9 refinement 2.2 ARIA Linge, O'Donoghue, Nilges
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