SOLUTION NMR


NMR Experiment
Experiment Type Sample Contents Ionic Strength Solvent pH Pressure Temprature (K)
1 2D DQF-COSY 2 mM DNA (5'-D(*DGP*DGP*DGP*DAP*DCP*DGP*DTP*DAP*DGP*DTP*DGP*DGP*DG)-3'), 10 mM K+, 10 % D2O, 90% H2O/10% D2O 10 90% H2O/10% D2O 7.85 ambient 298
2 2D 1H-1H NOESY 2 mM DNA (5'-D(*DGP*DGP*DGP*DAP*DCP*DGP*DTP*DAP*DGP*DTP*DGP*DGP*DG)-3'), 10 mM K+, 10 % D2O, 90% H2O/10% D2O 10 90% H2O/10% D2O 7.85 ambient 298
3 2D 1H-1H TOCSY 2 mM DNA (5'-D(*DGP*DGP*DGP*DAP*DCP*DGP*DTP*DAP*DGP*DTP*DGP*DGP*DG)-3'), 10 mM K+, 10 % D2O, 90% H2O/10% D2O 10 90% H2O/10% D2O 7.85 ambient 298
NMR Spectrometer Information
Spectrometer Manufacturer Model Field Strength
1 Bruker AVANCE 600
NMR Refinement
Method Details Software
molecular dynamics Molecular dynamics on selected model. Conformers selected from the last 200ps of rMD. 5 structures selected based on a cluster analysis to group structures by RMSD. 1
NMR Ensemble Information
Conformer Selection Criteria structures with acceptable covalent geometry
Conformers Calculated Total Number 6000
Conformers Submitted Total Number 5
Representative Model 1 (closest to the average)
Computation: NMR Software
# Classification Version Software Name Author
1 structure solution 8 Amber Case, Darden, Cheatham, III, Simmerling, Wang, Duke, Luo, ... and Kollm
2 refinement 8 Amber Case, Darden, Cheatham, III, Simmerling, Wang, Duke, Luo, ... and Kollm
3 processing 2.1 TopSpin Bruker Biospin
4 collection 2.1 TopSpin Bruker Biospin
5 data analysis 2k MOLMOL Koradi, Billeter and Wuthrich
6 chemical shift assignment 1.16 CCPNMR CCPN
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