SOLUTION NMR

NMR Experiment
Experiment Type Sample Contents Ionic Strength Solvent pH Pressure Temprature (K)
1 2D 1H-15N HSQC 0.9 mM [U-100% 13C; U-100% 15N] Pax8 Paired Box Domain, 40 uM DSS, 50 mM sodium phosphate, 0.1 % sodium azide, 15 mM [U-100% 2H] DTT, 90% H2O/10% D2O 50 90% H2O/10% D2O 6.2 ambient 298.00
2 2D 1H-13C HSQC CT 0.9 mM [U-100% 13C; U-100% 15N] Pax8 Paired Box Domain, 40 uM DSS, 50 mM sodium phosphate, 0.1 % sodium azide, 15 mM [U-100% 2H] DTT, 90% H2O/10% D2O 50 90% H2O/10% D2O 6.2 ambient 298.00
3 3D CBCA(CO)NH 0.9 mM [U-100% 13C; U-100% 15N] Pax8 Paired Box Domain, 40 uM DSS, 50 mM sodium phosphate, 0.1 % sodium azide, 15 mM [U-100% 2H] DTT, 90% H2O/10% D2O 50 90% H2O/10% D2O 6.2 ambient 298.00
4 3D C(CO)NH 0.9 mM [U-100% 13C; U-100% 15N] Pax8 Paired Box Domain, 40 uM DSS, 50 mM sodium phosphate, 0.1 % sodium azide, 15 mM [U-100% 2H] DTT, 90% H2O/10% D2O 50 90% H2O/10% D2O 6.2 ambient 298.00
5 3D HNCO 0.9 mM [U-100% 13C; U-100% 15N] Pax8 Paired Box Domain, 40 uM DSS, 50 mM sodium phosphate, 0.1 % sodium azide, 15 mM [U-100% 2H] DTT, 90% H2O/10% D2O 50 90% H2O/10% D2O 6.2 ambient 298.00
6 3D HNCA 0.9 mM [U-100% 13C; U-100% 15N] Pax8 Paired Box Domain, 40 uM DSS, 50 mM sodium phosphate, 0.1 % sodium azide, 15 mM [U-100% 2H] DTT, 90% H2O/10% D2O 50 90% H2O/10% D2O 6.2 ambient 298.00
7 3D HNCACB 0.9 mM [U-100% 13C; U-100% 15N] Pax8 Paired Box Domain, 40 uM DSS, 50 mM sodium phosphate, 0.1 % sodium azide, 15 mM [U-100% 2H] DTT, 90% H2O/10% D2O 50 90% H2O/10% D2O 6.2 ambient 298.00
8 3D HN(CO)CA 0.9 mM [U-100% 13C; U-100% 15N] Pax8 Paired Box Domain, 40 uM DSS, 50 mM sodium phosphate, 0.1 % sodium azide, 15 mM [U-100% 2H] DTT, 90% H2O/10% D2O 50 90% H2O/10% D2O 6.2 ambient 298.00
9 3D HCCH-TOCSY 0.9 mM [U-100% 13C; U-100% 15N] Pax8 Paired Box Domain, 40 uM DSS, 50 mM sodium phosphate, 0.1 % sodium azide, 15 mM [U-100% 2H] DTT, 90% H2O/10% D2O 50 90% H2O/10% D2O 6.2 ambient 298.00
10 3D 1H-15N NOESY 0.9 mM [U-100% 13C; U-100% 15N] Pax8 Paired Box Domain, 40 uM DSS, 50 mM sodium phosphate, 0.1 % sodium azide, 15 mM [U-100% 2H] DTT, 90% H2O/10% D2O 50 90% H2O/10% D2O 6.2 ambient 298.00
11 3D 1H-13C NOESY 0.9 mM [U-100% 13C; U-100% 15N] Pax8 Paired Box Domain, 40 uM DSS, 50 mM sodium phosphate, 0.1 % sodium azide, 15 mM [U-100% 2H] DTT, 90% H2O/10% D2O 50 90% H2O/10% D2O 6.2 ambient 298.00
12 3D CBCANH 0.9 mM [U-100% 13C; U-100% 15N] Pax8 Paired Box Domain, 40 uM DSS, 50 mM sodium phosphate, 0.1 % sodium azide, 15 mM [U-100% 2H] DTT, 90% H2O/10% D2O 50 90% H2O/10% D2O 6.2 ambient 298.00
13 3D HN(COCA)CB 0.9 mM [U-100% 13C; U-100% 15N] Pax8 Paired Box Domain, 40 uM DSS, 50 mM sodium phosphate, 0.1 % sodium azide, 15 mM [U-100% 2H] DTT, 90% H2O/10% D2O 50 90% H2O/10% D2O 6.2 ambient 298.00
NMR Spectrometer Information
Spectrometer Manufacturer Model Field Strength
NMR Refinement
Method Details Software
molecular mechanics Minimization was performed by means of Discover, with 200 iterations using the steep descent and 800 iterations using the conjugate gradients algorithms. c-terminal superposition is performed between residues 87-135 and the n-terminal superposition can be performed between 29-62. 1
NMR Ensemble Information
Conformer Selection Criteria structures with the lowest energy
Conformers Calculated Total Number 300
Conformers Submitted Total Number 20
Representative Model 1 (lowest energy)
Computation: NMR Software
# Classification Version Software Name Author
1 structure solution 2.1 CYANA Guntert, Mumenthaler and Wuthrich
2 data analysis (NMR-Pipe 3.5) TALOS Cornilescu, Delaglio and Bax
3 validation 3.4 ProcheckNMR Laskowski and MacArthur
4 collection 1.3 TopSpin Bruker Biospin
5 processing 1.3 TopSpin Bruker Biospin
6 chemical shift assignment 1.8.4 CARA Rochus Keller
7 data analysis 1.8.4 CARA Rochus Keller
8 peak picking 1.8.4 CARA Rochus Keller
9 refinement 2.98 Discover Accelrys Software Inc.
10 validation 3.2 AQUA Rullmann, Doreleijers and Kaptein
11 validation ? WHAT IF Vriend