SOLUTION NMR

NMR Experiment
Experiment Type Sample Contents Ionic Strength Solvent pH Pressure Temprature (K)
NMR Spectrometer Information
Spectrometer Manufacturer Model Field Strength
NMR Refinement
Method Details Software
molecular dynamics The structure of the "bound" conformation of the HIV-1 capsid protein (in the presence of the ligand) was obtained from the crystal. The complex was calculated using NMR distance restraints in reference to the bound conformation of the capsid protein. Refinement was performed using simulated molecular dynamics in AMBER 9.0. 1
NMR Ensemble Information
Conformer Selection Criteria all calculated structures submitted
Conformers Calculated Total Number 20
Conformers Submitted Total Number 20
Representative Model 1 (lowest energy)
Computation: NMR Software
# Classification Version Software Name Author
1 refinement 9.0 Amber Case, Darden, Cheatham, III, Simmerling, Wang, Duke, Luo, and Koll
2 chemical shift assignment ? NMRView Johnson, One Moon Scientific
3 peak picking ? NMRView Johnson, One Moon Scientific
4 processing ? NMRPipe Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
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