Home
About
Browse
Covid-19
Organism Classification
Alphafold Collection
Indian Data
Contact
Search Type
PDB Id
Uniprot Id
Source Organism
Host Organism
Protein Name
Method
Summary
Structure Feature
Experiment
Ligands & Environment
2IKD
pdb_00002ikd
10.2210/pdb2ikd/pdb
Download file
FASTA
PDB
MMCIF
Binary MMCIF
XML
Structure Factors
Full Validation Report
Validation File (XML)
Validation File (CIF)
FASTA Zipped(.gz)
PDB Zipped(.gz)
MMCIF Zipped(.gz)
Binary MMCIF Zipped(.gz)
Structure Factors Zipped(.gz)
Validation File Zipped (.xml.gz)
Validation File Zipped (.cif.gz)
SOLUTION NMR
NMR Experiment
Experiment
Type
Sample Contents
Ionic Strength
Solvent
pH
Pressure
Temprature (K)
1
3D_13C-separated_NOESY
1 mM Dual-Clip domain U-15N,13C, 100 mM phosphate buffer NA, 90% H2O, 10% D2O
?
90% H2O/10% D2O
8.0
1
298
2
3D_15N-separated_NOESY
1 mM Dual-Clip domain U-15N,13C, 100 mM phosphate buffer NA, 90% H2O, 10% D2O
?
90% H2O/10% D2O
8.0
1
298
NMR Spectrometer Information
Spectrometer
Manufacturer
Model
Field Strength
1
Bruker
AVANCE
800
NMR Refinement
Method
Details
Software
distance geometry, simulated annealing, molecular dynamics, matrix relaxation, torsion angle dynamics
the structures are based on a total of 889 restraints, 823 are NOE-dirived distance constraints, 28 dihedral angle restraints, 38 distance restraints from hydrogen bonds
1
NMR Ensemble Information
Conformer Selection Criteria
structures with the lowest energy
Conformers Calculated Total Number
100
Conformers Submitted Total Number
20
Representative Model
1 (lowest energy)
Computation: NMR Software
#
Classification
Version
Software Name
Author
1
collection
?
XwinNMR
Bruker
2
data analysis
?
Sparky
?
3
processing
?
NMRPipe
?
4
structure solution
2.1
CNS
?
5
refinement
2.1
CNS
?