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PDB Id
Uniprot Id
Source Organism
Host Organism
Protein Name
Method
Summary
Structure Feature
Experiment
Ligands & Environment
2C7D
pdb_00002c7d
10.2210/pdb2c7d/pdb
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ELECTRON MICROSCOPY
Sample
GROEL-ADP7-GROES
Specimen Preperation
Sample Aggregation State
PARTICLE
Vitrification Instrument
?
Cryogen Name
ETHANE
Sample Vitrification Details
LIQUID ETHANE
3D Reconstruction
Reconstruction Method
SINGLE PARTICLE
Number of Particles
7591
Reported Resolution (Å)
8.7
Resolution Method
?
Other Details
RECIPROCAL SPACE FITTING OF SEVEN SEVEN INDEPENDENT RIGID BODIES WITH URO. FITTED ENTITIES WERE GROEL EQUATORIAL (RESIDUES 3-136 AND 410-524), INTERMEDIATE (RESIDUES 137-192 AND 374-409) AND APICAL (RESIDUES 192-373) DOMAINS, PLUS A GROES SUBUNIT. THE MAP INTO WHICH THESE COORDINATES WERE FITTED IS AVAILABLE AT THE EMD (EMD-1181)
Refinement Type
Symmetry Type
POINT
Map-Model Fitting and Refinement
ID
1
Refinement Space
?
Refinement Protocol
OTHER
Refinement Target
?
Overall B Value
?
Fitting Procedure
?
Details
METHOD--RECIPROCAL SPACE FITTING IN URO
Data Acquisition
Detector Type
KODAK SO-163 FILM
Electron Dose (electrons/Å
2
)
15
Imaging Experiment
Date of Experiment
?
Temprature (Kelvin)
Microscope Model
FEI TECNAI F20
Minimum Defocus (nm)
1400
Maximum Defocus (nm)
3300
Minimum Tilt Angle (degrees)
?
Maximum Tilt Angle (degrees)
?
Nominal CS
2.0
Imaging Mode
BRIGHT FIELD
Specimen Holder Model
.
Nominal Magnification
50000
Calibrated Magnification
?
Source
FIELD EMISSION GUN
Acceleration Voltage (kV)
200
Imaging Details
?
Imaging Experiment
Task
Software Package
Version
MODEL FITTING
URO
?
RECONSTRUCTION
IMAGIC
?
RECONSTRUCTION
SPIDER
?
Image Processing
CTF Correction Type
CTF Correction Details
Number of Particles Selected
Particle Selection Details
?
FULL CORRECTION ON 2D CLASS AVERAGES