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PDB Id
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Protein Name
Method
Summary
Structure Feature
Experiment
Ligands & Environment
1MJ1
pdb_00001mj1
10.2210/pdb1mj1/pdb
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FASTA
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Structure Factors
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Validation File (XML)
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ELECTRON MICROSCOPY
Sample
EF-Tu/tRNA/GTP E. COLI 70S RIBOSOME
Specimen Preperation
Sample Aggregation State
PARTICLE
Vitrification Instrument
?
Cryogen Name
ETHANE
Sample Vitrification Details
?
3D Reconstruction
Reconstruction Method
SINGLE PARTICLE
Number of Particles
24000
Reported Resolution (Å)
13
Resolution Method
?
Other Details
?
Refinement Type
Symmetry Type
POINT
Map-Model Fitting and Refinement
ID
1
Refinement Space
REAL
Refinement Protocol
RIGID BODY FIT
Refinement Target
best visual fit using the program Amira (ribosomal proteins), best fit using the program Situs (EF-Tu)
Overall B Value
?
Fitting Procedure
?
Details
REFINEMENT PROTOCOL--rigid body DETAILS--FOR S12, S13, SRL, HELIX69 ANS L11 ONLY BACKBONE COORDINATES ARE DEPOSITED
Data Acquisition
Detector Type
KODAK SO-163 FILM
Electron Dose (electrons/Å
2
)
15
Imaging Experiment
Date of Experiment
2000-03-10
Temprature (Kelvin)
Microscope Model
FEI/PHILIPS CM200FEG/SOPHIE
Minimum Defocus (nm)
800
Maximum Defocus (nm)
2500
Minimum Tilt Angle (degrees)
0
Maximum Tilt Angle (degrees)
0
Nominal CS
1.35
Imaging Mode
BRIGHT FIELD
Specimen Holder Model
?
Nominal Magnification
?
Calibrated Magnification
58500
Source
FIELD EMISSION GUN
Acceleration Voltage (kV)
120
Imaging Details
?
Imaging Experiment
Task
Software Package
Version
MODEL FITTING
Situs
?
RECONSTRUCTION
IMAGIC
?
MODEL FITTING
Amira
?
Image Processing
CTF Correction Type
CTF Correction Details
Number of Particles Selected
Particle Selection Details
.
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