SOLUTION NMR


NMR Experiment
Experiment Type Sample Contents Ionic Strength Solvent pH Pressure Temprature (K)
1 2D NOESY 3mM trpzip2 0 92% H2O, 8% D2O, pH 5.5, 0.1mM DSS 5.5 ambient 288
2 DQF-COSY 3mM trpzip2 0 92% H2O, 8% D2O, pH 5.5, 0.1mM DSS 5.5 ambient 288
3 2D TOCSY 3mM trpzip2 0 92% H2O, 8% D2O, pH 5.5, 0.1mM DSS 5.5 ambient 288
4 2D ROESY 3mM trpzip2 0 92% H2O, 8% D2O, pH 5.5, 0.1mM DSS 5.5 ambient 288
5 2D COSY-35 0 5.5 ambient 288
NMR Spectrometer Information
Spectrometer Manufacturer Model Field Strength
1 Bruker DRX 500
NMR Refinement
Method Details Software
Hybrid distance geometry/simulated annealing using the program DGII, followed by molecular dynamics using the program AMBER, in conjunction not only with distance and dihedral angle restraints, but also 1H chemical shift-based restraints. Structures are based on a total of 80 (including 26 intra-residue, 15 sequential, 6 medium-range, and 33 long-range) NOE-derived distance restraints, 15 dihedral angle restraints, and 1H chemical shift restraints for 39 carbon-bound 1H resonances; (chemical shift restraints were not imposed for the terminal residues, or for side chains exhibiting evidence of rotational averaging). The ensemble agrees well with the experimental restraints with no distance or dihedral angle violations greater than 0.10 angstrom or 5 deg, respectively, and an average rmsd of only 0.087 ppm between observed and calculated chemical shifts. 1
NMR Ensemble Information
Conformer Selection Criteria structures with the least restraint violations
Conformers Calculated Total Number 76
Conformers Submitted Total Number 20
Representative Model 1 (closest to the average)
Computation: NMR Software
# Classification Version Software Name Author
1 collection 2.5 XwinNMR Bruker
2 data analysis 98.0 Felix Molecular Simulations, Inc.
3 structure solution 98.0 DGII Molecular Simulations, Inc.
4 refinement 6.0 Amber Case and Kollman
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