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Organism Classification
Alphafold Collection
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Search Type
PDB Id
Uniprot Id
Source Organism
Host Organism
Protein Name
Method
Summary
Structure Feature
Experiment
Ligands & Environment
1GW8
ELECTRON MICROSCOPY
Sample
BACTERIOPHAGE PRD1 SUS607
Specimen Preperation
Sample Aggregation State
PARTICLE
Vitrification Instrument
HOMEMADE PLUNGER
Cryogen Name
ETHANE
Sample Vitrification Details
ETHANE
3D Reconstruction
Reconstruction Method
SINGLE PARTICLE
Number of Particles
1729
Reported Resolution (Å)
13.3
Resolution Method
?
Other Details
RIGID BODY REFINEMENT AGAINST CRYO-EM MAP XPLOR 3.851 (BRUNGER). DATA USED IN REFINEMENT. RESOLUTION RANGE HIGH INFINITY RESOLUTION RANGE LOW 15A DATA CUTOFF (SIGMA(F)) 0.0 NUMBER OF REFLECTIONS 1430672 FIT TO DATA USED IN
Refinement Type
Symmetry Type
POINT
Map-Model Fitting and Refinement
ID
1
Refinement Space
RECIPROCAL
Refinement Protocol
RIGID BODY FIT
Refinement Target
R-factor
Overall B Value
?
Fitting Procedure
?
Details
METHOD--RIGID BODY REFINEMENT PROTOCOL--X-RAY
Data Acquisition
Detector Type
KODAK SO-163 FILM
Electron Dose (electrons/Å
2
)
6
Imaging Experiment
Date of Experiment
2001-12-01
Temprature (Kelvin)
Microscope Model
FEI/PHILIPS CM200FEG
Minimum Defocus (nm)
1300
Maximum Defocus (nm)
4100
Minimum Tilt Angle (degrees)
?
Maximum Tilt Angle (degrees)
?
Nominal CS
2
Imaging Mode
BRIGHT FIELD
Specimen Holder Model
.
Nominal Magnification
50000
Calibrated Magnification
45100
Source
FIELD EMISSION GUN
Acceleration Voltage (kV)
200
Imaging Details
?
Imaging Experiment
Task
Software Package
Version
MODEL FITTING
EMfit
?
RECONSTRUCTION
MRC IMAGE PROCESSING PACKAGE
?
RECONSTRUCTION
SPIDER
?
Image Processing
CTF Correction Type
CTF Correction Details
Number of Particles Selected
Particle Selection Details
?
PHASE RESTORATION BY CTF- MULTIPLICATION OF IMAGES; AMPLITUDE RESTORATION BY COMPARISON WITH QUASI- ATOMIC MODEL