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PDB Id
Uniprot Id
Source Organism
Host Organism
Protein Name
Method
Summary
Structure Feature
Experiment
Ligands & Environment
1GRU
pdb_00001gru
10.2210/pdb1gru/pdb
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FASTA
PDB
MMCIF
Binary MMCIF
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Structure Factors
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Validation File (XML)
Validation File (CIF)
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Validation File Zipped (.cif.gz)
ELECTRON MICROSCOPY
Sample
GROEL (C7)
Specimen Preperation
Sample Aggregation State
PARTICLE
Vitrification Instrument
HOMEMADE PLUNGER
Cryogen Name
ETHANE
Sample Vitrification Details
LIQUID ETHANE
3D Reconstruction
Reconstruction Method
SINGLE PARTICLE
Number of Particles
1448
Reported Resolution (Å)
12.5
Resolution Method
?
Other Details
ATOMIC COORDINATES FROM 1AON FITTED BY HAND. CIS RING FITTED WHOLE. TRANS EQUATORIAL AND INTERMEDIATE DOMAINS ALSO FITTED AS 7MER. A SINGLE TRANS APICAL WAS FITTED BY HAND AND THEN THE OTHER 6 POSITIONS CREATED FROM SYMMETRY.
Refinement Type
Symmetry Type
POINT
Map-Model Fitting and Refinement
ID
1
Refinement Space
REAL
Refinement Protocol
OTHER
Refinement Target
?
Overall B Value
?
Fitting Procedure
?
Details
METHOD--BY HAND REFINEMENT PROTOCOL--X-RAY
Data Acquisition
Detector Type
KODAK SO-163 FILM
Electron Dose (electrons/Å
2
)
20
Imaging Experiment
Date of Experiment
2001-07-01
Temprature (Kelvin)
Microscope Model
FEI TECNAI F20
Minimum Defocus (nm)
900
Maximum Defocus (nm)
3000
Minimum Tilt Angle (degrees)
0
Maximum Tilt Angle (degrees)
?
Nominal CS
?
Imaging Mode
BRIGHT FIELD
Specimen Holder Model
.
Nominal Magnification
50000
Calibrated Magnification
?
Source
FIELD EMISSION GUN
Acceleration Voltage (kV)
200
Imaging Details
?
Imaging Experiment
Task
Software Package
Version
MODEL FITTING
O
?
RECONSTRUCTION
SPIDER
?
Image Processing
CTF Correction Type
CTF Correction Details
Number of Particles Selected
Particle Selection Details
?
CLASS AVERAGES