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Organism Classification
Alphafold Collection
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Search Type
PDB Id
Uniprot Id
Source Organism
Host Organism
Protein Name
Method
Summary
Structure Feature
Experiment
Ligands & Environment
1GR5
ELECTRON MICROSCOPY
Sample
MOLECULAR CHAPERONE
Specimen Preperation
Sample Aggregation State
PARTICLE
Vitrification Instrument
HOMEMADE PLUNGER
Cryogen Name
ETHANE
Sample Vitrification Details
LIQUID ETHANE
3D Reconstruction
Reconstruction Method
SINGLE PARTICLE
Number of Particles
8728
Reported Resolution (Å)
7.9
Resolution Method
FSC 0.5 CUT-OFF
Other Details
THE THREE DOMAINS FROM EACH SUBUNIT (PDB 1DER) WERE FITTED SEPARATELY INTO EM DENSITY OF WILD TYPE UNLIGANDED GROEL. THE MUTATIONS LISTED ARE PRESENT IN THE FITTED COORDINATES AND NOT IN THE MOLECULE WHICH GENERATED THE EM MAP. THE QUOTED RESOLUTION IS AT 3SIGMA - THE RESOLUTION AT FSC=0.5 IS 10.8A THIS ENTRY REPRESENTS THE COMPLETE BIOMOLECULE.
Refinement Type
Symmetry Type
POINT
Map-Model Fitting and Refinement
ID
1
Refinement Space
REAL
Refinement Protocol
OTHER
Refinement Target
?
Overall B Value
?
Fitting Procedure
?
Details
METHOD--LOCAL CORRELATION REFINEMENT PROTOCOL--X-RAY
Data Acquisition
Detector Type
KODAK SO-163 FILM
Electron Dose (electrons/Å
2
)
20
Imaging Experiment
Date of Experiment
1997-02-01
Temprature (Kelvin)
Microscope Model
FEI/PHILIPS CM200T
Minimum Defocus (nm)
800
Maximum Defocus (nm)
1900
Minimum Tilt Angle (degrees)
0
Maximum Tilt Angle (degrees)
0
Nominal CS
?
Imaging Mode
BRIGHT FIELD
Specimen Holder Model
.
Nominal Magnification
38000
Calibrated Magnification
40200
Source
FIELD EMISSION GUN
Acceleration Voltage (kV)
200
Imaging Details
?
Imaging Experiment
Task
Software Package
Version
MODEL FITTING
DockEM
?
RECONSTRUCTION
SPIDER
?
Image Processing
CTF Correction Type
CTF Correction Details
Number of Particles Selected
Particle Selection Details
?
CLASS AVERAGES