Home
About
Browse
Covid-19
Organism Classification
Alphafold Collection
Indian Data
Contact
Search Type
PDB Id
Uniprot Id
Source Organism
Host Organism
Protein Name
Method
Summary
Structure Feature
Experiment
Ligands & Environment
1EKI
pdb_00001eki
10.2210/pdb1eki/pdb
Download file
FASTA
PDB
MMCIF
Binary MMCIF
XML
Structure Factors
Full Validation Report
Validation File (XML)
Validation File (CIF)
FASTA Zipped(.gz)
PDB Zipped(.gz)
MMCIF Zipped(.gz)
Binary MMCIF Zipped(.gz)
Structure Factors Zipped(.gz)
Validation File Zipped (.xml.gz)
Validation File Zipped (.cif.gz)
SOLUTION NMR
NMR Experiment
Experiment
Type
Sample Contents
Ionic Strength
Solvent
pH
Pressure
Temprature (K)
1
2D NOESY
2mM DNA-drug complex, 25 degrees C, in buffer (100mM NaCl, 10mM Na borate), final PH 6.
110mM
90% H2O/10% D2O
6
1
298
2
13C-1H HMQC
2mM DNA-drug complex, 25 degrees C, in buffer (100mM NaCl, 10mM Na borate), final PH 6.
110mM
90% H2O/10% D2O
6
1
298
NMR Spectrometer Information
Spectrometer
Manufacturer
Model
Field Strength
1
GE
OMEGA
500
NMR Refinement
Method
Details
Software
simulated annealing
molecular dynamics, isolated spin-pair approximation for NOE's; pseudocontact shift refinement
1
NMR Ensemble Information
Conformer Selection Criteria
average structure
Conformers Calculated Total Number
1
Conformers Submitted Total Number
1
Representative Model
1 (minimized average structure)
Computation: NMR Software
#
Classification
Version
Software Name
Author
1
processing
1.7
NMRPipe
DeLaglio and Bax
2
data analysis
3.0
Sparky
Kneller and Goddard
3
refinement
3.0, 3.851
X-PLOR
Brunger (modified Gochin and Tu)
4
data analysis
2.1
Felix
Biosym