| DISTANCE GEOMETRY WITH SIMULATED ANNEALING REFINEMENT |
DISTANCE GEOMETRY WAS PERFORMED USING 5% PAIRWISE METRIZATION AND A GAUSSIAN TRIAL DISTRIBUTION FOR THE SELECTION OF DISTANCES USING THE PROGRAM DISTGEOM, A COMPONENT OF THE TINKER MOLECULAR MODELING PACKAGE. EMBEDDED STRUCTURES WERE REFINED VERSUS A PENALTY FUNCTION BASED SOLELY ON THE EXPERIMENTAL RESTRAINTS AND LOCAL COVALENT GEOMETRY (BOND LENGTHS, ANGLES, CHIRALITY); NO ENERGY-BASED TERMS WERE INCLUDED. DETAILS OF THE CALCULATIONS AND STRUCTURAL STATISTICS ARE GIVEN IN THE PAPER CITED ON THE JRNL RECORDS ABOVE.
THE LOOP FROM RESIDUES 8 - 20 IS ENTIRELY UNRESTRAINED.
THIS REGION CONTAINS THE SITE OF THE DELETED HELICES OF
I-FABP. CARE SHOULD BE TAKEN WHEN ANALYZING STATISTICS ON
THIS MOLECULE AS THIS UNRESTRAINED LOOP WILL ABNORMALLY
SKEW ANY RESULTS. |
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