Study Info
INDA Accessions: INRP000090
INSDC Accessions: PRJNA972661, SRP437689
- Title: Polysome bound mRNA Seq analysis of tolerant (APO) and susceptible (IR64) variety of Oryza sativa cv. Indica under 50% drought (Asian cultivated rice)
- Data Type : Metagenomics
- Descriptive Title: Polysome bound mRNA Seq analysis of tolerant (APO) and susceptible (IR64) variety of Oryza sativa cv. Indica under 50% drought
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Organism:
Scientific Name(Taxon Id): Oryza sativa (4530) Common Name: Asian cultivated rice
Scientific Name(Taxon Id): Oryza sativa Indica Group (39946) Common Name: long-grained rice
Other Info
- Abstract: Plants evolved several acquired tolerance traits for drought stress adaptation to maintain the cellular homeostasis. The combination of constitutive and acquired traits governs drought tolerance, which is crucial for maintaining crop productivity under drought. Drought affects protein synthesis, to uncover the translational landscape with response to drought stress in rice, polysome bound mRNA sequencing at anthesis stage in resistant APO and sensitive IR64 genotypes were performed. Our results demonstrate that drought tolerant genotype maintains higher transcripts bound to poly-ribosomes which facilitate higher protien synthesis which impacted on photosynthesis, spikelet fertility, seed filing and yield under drought stress. We identified many novel LncRNAs and relevant genes associated with translation which can play important role in manitaing grain protein content with drought tolerance. Overall design: Samples from two categories: control, drought were analysed from both APO and IR64 variety. Each sample was run in triplicate. Total number of sample analysed is 12.
- Linked publications: 123456 ,
- Center Name: Akashata Dawane, Sanjay H Deshpande, Preethi Vijayaraghavareddy, Ramu S V, Regional Centre For Biotechnology,Faridabad
- Number of Base(Total) Mbp: 98,657,154,880
- Size in bytes(Total): 34,859,667,787
- Number of sample:
- Number of Runs:
- Number of Sequences:
- Number of Assembly:
- Number of Variant files:
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