Indian Nucleotide Data Archive

A comprehensive record of the world's nucleotide sequencing information

Study Details

INDA Accession: INRP000084
Release Date: 2024-01-24
Study Info
INDA Accessions: INRP000084
INSDC Accessions: PRJEB70241, ERP155180
  • Title: Development of superior haplotype based near isogenic lines HaploNILs for enhanced genetic gain in rice
  • Data Type : Resequencing
  • Descriptive Title: Development of superior haplotype based near isogenic lines HaploNILs for enhanced genetic gain in rice
  • Organism:
    Scientific Name(Taxon Id): Oryza sativa (4530)    Common Name: Asian cultivated rice
Other Info
  • Abstract: In this study, we performed whole genome resequencing of a core collection of 370 rice accessions obtained from 10 different states in India. The collection consisted of diverse types, including breeding lines, varieties, hybrids, farmer varieties, and landraces that are predominantly cultivated in the Indian subcontinent and widely adopted by rice growers. The average sequencing depth of genomes was 25X.
  • Linked publications:
  • Center Name: Pallavi Sinha, International Rice Research Institute
  • Number of Base(Total) Mbp: 0
  • Size in bytes(Total): 49,442,357,993
  • Number of sample:
  • Number of Runs:
  • Number of Sequences:
  • Number of Assembly:

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Study Design

INDA Accession: INRP000084
Release Date: 2024-01-24
  • INRP000084
    • INS0003765
      • INRX003639
        • INRR003639
    • INS0004119
      • INRX004011
        • INRR004011
    • INS0004120
      • INRX004012
        • INRR004012
    • INS0004121
      • INRX004013
        • INRR004013
    • INS0004122
      • INRX004014
        • INRR004014
      • INRX004015
        • INRR004015
    • INS0004123
      • INRX004016
        • INRR004016
    • INS0004124
      • INRX004017
        • INRR004017
    • INS0004125
      • INRX004018
        • INRR004018
    • INS0004126
      • INRX004019
        • INRR004019
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