Study Info
INDA Accessions: INRP000074
INSDC Accessions: PRJEB63408, ERP148576
- Title: Community-acquired UTI epidemiological study from four different geographical region.
- Data Type : Whole Genome Sequencing
- Descriptive Title: Phenotypic and genotypic distribution and epidemiology of ESBL positive, MDR uropathogens in the community settings of India: A multicentric cross-sectional study
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Organism:
Scientific Name(Taxon Id): Escherichia coli (562) Common Name:
Scientific Name(Taxon Id): Klebsiella pneumoniae (573) Common Name:
Scientific Name(Taxon Id): Klebsiella pneumoniae (573) Common Name:
Other Info
- Abstract: Urinary tract infection UTI is one of the most common bacterial infections encountered in community settings worldwide and a major driver of antimicrobial resistance AMR. There is an increased incidence of 60.4 percent. UTI cases from year 1990 to the year 2019globally with at least 150 million infections annually. UTI due to multidrug-resistant uropathogens accounts fora significant cause of morbidity and mortality. More ever, it is one of the leading causes of antibiotic prescription particularly in developing countries. Studies from different geographical location such as Sri Lanka, China, and some European countries showed an increasing incidence of an Extended Spectrum of Beta-Lactamase producing bacteria. It was a prospective cross-sectional multicentric study on community-acquired UTI and emerging drug resistance. The total number of patients screened from all centres were 6009 and significant bacteriuria was observed in 11.8 percent. The majority of the samples 4,142 were obtained from female patients followed by the male patients. Gram-negative bacilli were determined as the predominant uropathogen causing UTI irrespective of different age groups, sex groups and centres. The most common isolated bacteria was E.coli accounting for 63 percent followed by K.pneumoniae 15.7 percent and their distribution was observed uniformlyin all four geographical areas. Gram-positive cocci were less prevalent in UTI as compared to GNB. The most commonly detected GPCs were Enterococcus spp. followed by Staphylococcus spp.. Knowledge regarding antimicrobial resistance in community settings is required to develop location-specific guidelines and polices to optimize UTI management and reduce the rate of emergence of AMR. The prevalence of ESBL producers, Nitrofurantoin and Carbapenem resistance, resistance among the E.coli was observed 65.4 percent, 8 percent and 9.5 percent whereas K.pneumoniae was observed 55 percent, 32 percent and 9.8 percent respectively. Nitrofurantion resistance was observed higher in K. pneumoniae isolates. None of the E.coli was observed resistance to fosfomycin.
- Linked publications:
- Center Name: Dr. Sarita Mohapatra, All Indian Institute of Medical Sciences
- Number of Base(Total) Mbp: 59,598,802,355
- Size in bytes(Total): 36,948,950,675
- Number of sample:
- Number of Runs:
- Number of Sequences:
- Number of Assembly:
- Number of Variant files:
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