Study Info
INDA Accessions: INRP000038
INSDC Accessions: PRJEB57435, ERP142410
- Title: Emerging drug resistance in community-acquired urinary tract infection and molecular insights into dynamics of resistance traits in Indian isolates- A multi-centric cross-sectional study
- Data Type : Whole Genome Sequencing
- Descriptive Title: Genome profiling of Uropathogenic E.coli from community acquired UTI in paediatric patients.
-
Organism:
Scientific Name(Taxon Id): Escherichia coli (562) Common Name:
Other Info
- Abstract: Urinary tract infection in children is a common bacterial infection. Our aim was to genotypically characterize the E.coli isolates recovered from the children with UTI for their resistance profile, circulating sequence types and the genetic profile harbouring resistance genes. Children 2-18 years from different community health centres of India with symptoms of UTI were enrolled from the year 2020-2022. Nineteen E.coli isolates-15 ESBL positive and 4 ESBL negative were sequenced. Eleven per cent 73/658 of children were included in the study with male and female ratio of 1:1. E.coli was the predominant uropathogen- Eighty Six percent followedby K. pneumoniae-Eleven percent. The susceptibility of E.coli was recorded highest against Fosfomycin-Hundred percent followed by Nitrofurantoin-Twelve percent and carbapenems-Nine percent. Genomic analysis of E. coli isolates showed sequence type 131 as the predominant with the presence of plasmid mobile elements and composite transposon in many isolates. This study results showed horizontal transmission of resistant genes with high-risk clones such as blaNDM-5 and blaCTX-M-15.
- Linked publications:
- Center Name: Dr. Sarita Mohapatra, Department of Microbiology, All Indian Institute of Medical Sciences
- Number of Base(Total) Mbp: 6,504,749,315
- Size in bytes(Total): 7,038,617,288
- Number of sample:
- Number of Runs:
- Number of Sequences:
- Number of Assembly:
Back