Study Info
INDA Accessions: INRP000017
INSDC Accessions: PRJEB47136, ERP131390
- Title: Investigations on regulation of miRNAs in rice reveal [Ca2+]cyt signal transduction regulated miRNAs
- Data Type : RNASeq
- Descriptive Title: Cytosolic calcium mediated regulation of miRNAs in rice cultivar N22.
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Organism:
Scientific Name(Taxon Id): Oryza sativa (4530) Common Name: rice
Other Info
- Abstract: MicroRNAs are critical components of the multi-dimensional regulatory networks in eukaryotic systems. Given their diverse spectrum of function, it is apparent that the transcription, processing as well as activity of the miRNAs themselves is very dynamically regulated. One of the most important and universally implicated signaling molecule is [Ca2+]cyt. It is known to regulate a plethora of developmental and metabolic processes in both plants and animals, however their impact on the regulation of miRNA expression is relatively less explored. The current study employed a combination of internal and external calcium channel inhibitors, to establish that [Ca2+]cyt signatures actively regulate miRNA expression in rice. Involvement of [Ca2+]cyt in regulation of miRNA expression was further confirmed by treatment with calcimycin, the calcium ionophore. Modulation of the cytosolic calcium levels was also found to regulate the drought responsive expression as well as ABA mediated response of miRNA genes in rice seedlings. The study further establishes the role of calmodulins and Calmodulin-binding Transcription Activators (CAMTAs) as important components of the signal transduction schema that regulates miRNA expression. Yeast-one-hybrid assay established that OsCAMTA4 and 6 are involved in the transcriptional regulation of miR156a and miR167h. Thus, the study was able to clearly establish that [Ca2+]cyt is actively involved in regulating expression of miRNA genes both under control and stress conditions.
- Linked publications:
- Center Name: University of Delhi South Campus
- Number of Base(Total) Mbp: 435,358,908
- Size in bytes(Total): 314,030,917
- Number of sample:
- Number of Runs:
- Number of Sequences:
- Number of Assembly:
- Number of Variant files:
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