9CR3 image
Deposition Date 2024-07-20
Release Date 2025-01-08
Last Version Date 2025-02-12
Entry Detail
PDB ID:
9CR3
Title:
CryoEM Structure of the human full length NAD Kinase
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.18 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:NAD kinase
Gene (Uniprot):NADK
Chain IDs:A, B (auth: D), C, D (auth: B)
Chain Length:477
Number of Molecules:4
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Cryo-EM structure and regulation of human NAD kinase.
Sci Adv 11 eads2664 eads2664 (2025)
PMID: 39854463 DOI: 10.1126/sciadv.ads2664

Abstact

Reduced nicotinamide adenine dinucleotide phosphate (NADPH) is a crucial reducing cofactor for reductive biosynthesis and protection from oxidative stress. To fulfill their heightened anabolic and reductive power demands, cancer cells must boost their NADPH production. Progrowth and mitogenic protein kinases promote the activity of cytosolic NAD kinase (NADK), which produces NADP+, a limiting NADPH precursor. However, the molecular architecture and mechanistic regulation of human NADK remain undescribed. Here, we report the cryo-electron microscopy structure of human NADK, both in its apo-form and in complex with its substrate NAD+ (nicotinamide adenine dinucleotide), revealing a tetrameric organization with distinct structural features. We discover that the amino (N)- and carboxyl (C)-terminal tails of NADK have opposing effects on its enzymatic activity and cellular NADP(H) levels. Specifically, the C-terminal region is critical for NADK activity, whereas the N-terminal region exhibits an inhibitory role. This study highlights molecular insights into the regulation of a vital enzyme governing NADP(H) production.

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Primary Citation of related structures