ISDA

Deposition Date 2021-03-04

Release Date 2022-04-06

Last Version Date 2025-07-02

Entry Detail

PDB ID:

7E9N

Keywords:

VIRAL PROTEIN,IMMUNE SYSTEM

Title:

Cryo-EM structure of the SARS-CoV-2 S-6P in complex with 35B5 Fab(1 down RBD, state1)

Biological Source:

Source Organism:

Severe acute respiratory syndrome coronavirus 2 (Taxon ID: 2697049)
Homo sapiens (Taxon ID: 9606)

Host Organism:

Homo sapiens

Method Details:

Experimental Method:

ELECTRON MICROSCOPY

Resolution:

3.69 Å

Aggregation State:

PARTICLE

Reconstruction Method:

SINGLE PARTICLE

Download Validation Report

Macromolecular Entities

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Spike glycoprotein
Gene (Uniprot):S
Mutations:F817P, A892P, A899P, A942P, K986P, V987P
Chain IDs:A (auth: B), B (auth: A), C
Chain Length:1121
Number of Molecules:3
Biological Source:Severe acute respiratory syndrome coronavirus 2

UniProt ID:P0DTC2 Pfam ID:PF16451, PF09408, PF19209, PF01601

Polymer Type:polypeptide(L)
Molecule:Light chain of 35B5 Fab
Chain IDs:D (auth: O), F (auth: X), H (auth: L)
Chain Length:218
Number of Molecules:3
Biological Source:Homo sapiens

Polymer Type:polypeptide(L)
Molecule:Heavy chain of 35B5 Fab
Chain IDs:E (auth: P), G (auth: Y), I (auth: H)
Chain Length:237
Number of Molecules:3
Biological Source:Homo sapiens

Ligand Molecules

NAG

Primary Citation

A potent human monoclonal antibody with pan-neutralizing activities directly dislocates S trimer of SARS-CoV-2 through binding both up and down forms of RBD

Wang, X, Hu, A, Chen, X, Zhang, Y, Yu, F, Yue, S, Li, A, Zhang, J, Pan, Z, Yang, Y, Lin, Y, Gao, L, Zhou, J, Zhao, J, Li, F, Shi, Y, Huang, F, Yang, X, Peng, Y, Tu, L, Zhang, H, Zheng, H, He, J, Zhang, H, Xu, L, Huang, Q, Zhu, Y, Deng, K, Ye, L.Show

Signal Transduct Target Ther 7 114 ? (2022)

DOI: 10.1038/s41392-022-00954-8

Primary Citation of related structures