6X5I image
Deposition Date 2020-05-26
Release Date 2020-06-03
Last Version Date 2025-04-09
Entry Detail
PDB ID:
6X5I
Keywords:
Title:
Cryo-EM of peptide-like filament of 1-KMe3
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Method Details:
Experimental Method:
Resolution:
4.30 Å
Aggregation State:
FILAMENT
Reconstruction Method:
HELICAL
Macromolecular Entities
Protein Blast
Polymer Type:polypeptide(D)
Molecule:1-KMe3 peptide-like fibril
Chain IDs:A (auth: B), B (auth: D), C (auth: E), D (auth: F), E (auth: G), F (auth: H), G (auth: I), H (auth: J), I (auth: K), J (auth: L), K (auth: M), L (auth: N), M (auth: O), N (auth: P), O (auth: Q), P (auth: R), Q (auth: S), R (auth: T), S (auth: U), T (auth: V), U (auth: W), V (auth: X), W (auth: Y), X (auth: Z), Y (auth: a), Z (auth: b), AA (auth: c), BA (auth: d), CA (auth: e), DA (auth: f), EA (auth: g), FA (auth: h), GA (auth: i), HA (auth: j), IA (auth: k), JA (auth: l), KA (auth: m), LA (auth: n), MA (auth: o), NA (auth: p), OA (auth: q), PA (auth: r), QA (auth: s), RA (auth: t), SA (auth: u), TA (auth: v), UA (auth: w), VA (auth: x), WA (auth: y), XA (auth: z), YA (auth: 0), ZA (auth: AA), AB (auth: BA), BB (auth: CA), CB (auth: DA), DB (auth: EA), EB (auth: FA), FB (auth: GA), GB (auth: HA), HB (auth: IA), IB (auth: JA), JB (auth: KA), KB (auth: LA), LB (auth: MA), MB (auth: NA), NB (auth: OA), OB (auth: PA), PB (auth: QA), QB (auth: RA), RB (auth: SA)
Chain Length:5
Number of Molecules:70
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Artificial Intracellular Filaments.
Cell Rep Phys Sci 1 ? ? (2020)
PMID: 32776017 DOI: 10.1016/j.xcrp.2020.100085

Abstact

Intracellular protein filaments are ubiquitous for cellular functions, but forming bona fide biomimetic intracellular filaments of small molecules in living cells remains elusive. Here, we report the in situ formation of self-limiting intracellular filaments of a small peptide via enzymatic morphological transition of a phosphorylated and trimethylated heterochiral tetrapeptide. Enzymatic dephosphorylation reduces repulsive intermolecular electrostatic interactions and converts the peptidic nanoparticles into filaments, which exhibit distinct types of cross-β structures with either C7 or C2 symmetries, with the hydrophilic C-terminal residues at the periphery of the helix. Macromolecular crowding promotes the peptide filaments to form bundles, which extend from the plasma membrane to nuclear membrane and hardly interact with endogenous components, including cytoskeletons. Stereochemistry and post-translational modification (PTM) of peptides are critical for generating the intracellular bundles. This work may offer a way to gain lost functions or to provide molecular insights for understanding normal and aberrant intracellular filaments.

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Primary Citation of related structures