1YPK image
Deposition Date 2005-01-31
Release Date 2006-01-17
Last Version Date 2024-11-06
Entry Detail
PDB ID:
1YPK
Keywords:
HYDROLASE/HYDROLASE INHIBITOR
Title:
Thrombin Inhibitor Complex
Biological Source:
Source Organism:
Hirudo medicinalis (Taxon ID: 6421)
Homo sapiens (Taxon ID: 9606)
Method Details:
Experimental Method:
X-RAY DIFFRACTION
Resolution:
1.78 Å
R-Value Free:
0.23
R-Value Work:
0.18
R-Value Observed:
0.18
Space Group:
C 1 2 1
1YPK validation report
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Prothrombin heavy chain
Gene (Uniprot):F2
Chain IDs:B (auth: H)
Chain Length:257
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:P00734 Pfam ID:PF00089, PF09396 EC:3.4.21.5
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:10-mer peptide from Acety-Hirudin(54-65) sulfated
Chain IDs:C (auth: I)
Chain Length:10
Number of Molecules:1
Biological Source:Hirudo medicinalis
UniProt ID:P01050
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Prothrombin light chain
Gene (Uniprot):F2
Chain IDs:A (auth: L)
Chain Length:27
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:P00734 Pfam ID:PF00089, PF09396 EC:3.4.21.5
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
TYS C TYR O-SULFO-L-TYROSINE
Ligand Molecules
CCR
Peptide-like Molecules
PRD_000628
Primary Citation
A Simple Protocol To Estimate Differences in Protein Binding Affinity for Enantiomers without Prior Resolution of Racemates
Angew.Chem.Int.Ed.Engl. 45 985 989 (2006)
PMID: 16374786 DOI: 10.1002/anie.200502302
Primary Citation of related structures
1K1N