1Q5M image
Deposition Date 2003-08-08
Release Date 2004-05-18
Last Version Date 2024-02-14
Entry Detail
PDB ID:
1Q5M
Keywords:
Title:
Binary complex of rabbit 20alpha-hydroxysteroid dehydrogenase with NADPH
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.32 Å
R-Value Free:
0.17
R-Value Work:
0.14
R-Value Observed:
0.14
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Prostaglandin-E2 9-reductase
Gene (Uniprot):AKR1C5
Chain IDs:A, B
Chain Length:322
Number of Molecules:2
Biological Source:Oryctolagus cuniculus
Primary Citation
Loop Relaxation, A Mechanism that Explains the Reduced Specificity of Rabbit 20alpha-Hydroxysteroid Dehydrogenase, A Member of the Aldo-Keto Reductase Superfamily.
J.Mol.Biol. 339 89 102 (2004)
PMID: 15123423 DOI: 10.1016/j.jmb.2004.03.035

Abstact

The aldo-keto reductase rabbit 20alpha-hydroxysteroid dehydrogenase (rb20alpha-HSD; AKR1C5) is less selective than other HSDs, since it exerts its activity both on androgens (C19 steroids) and progestins (C21 steroids). In order to identify the molecular determinants responsible for this reduced selectivity, binary (NADPH) and ternary (NADP(+)/testosterone) complex structures were solved to 1.32A and 2.08A resolution, respectively. Inspection of the cofactor-binding cavity led to the identification of a new interaction between side-chains of residues His222 and Lys270, which cover the central phosphate chain of the cofactor, reminiscent of the "safety-belt" found in other aldo-keto reductases. Testosterone is stabilized by a phenol/benzene tunnel composed of side-chains of numerous residues, among which Phe54, which forces the steroid to take up an orientation markedly contrasting with that found in HSD ternary complexes reported. Combining structural, site-directed mutagenesis, kinetic and fluorescence titration studies, we found that the selectivity of rb20alpha-HSD is mediated by (i) the relaxation of loop B (residues 223-230), partly controlled by the nature of residue 230, (ii) the nature of the residue found at position 54, and (iii) the residues found in the C-terminal tail of the protein especially the side-chain of the amino acid 306.

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