1GQ8 image
Deposition Date 2001-11-20
Release Date 2002-04-18
Last Version Date 2024-10-23
Entry Detail
PDB ID:
1GQ8
Keywords:
Title:
Pectin methylesterase from Carrot
Biological Source:
Source Organism:
DAUCUS CAROTA (Taxon ID: 4039)
Method Details:
Experimental Method:
Resolution:
1.75 Å
R-Value Free:
0.19
R-Value Work:
0.18
R-Value Observed:
0.18
Space Group:
P 21 21 2
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:PECTINESTERASE
Chain IDs:A
Chain Length:319
Number of Molecules:1
Biological Source:DAUCUS CAROTA
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
PCA A GLU PYROGLUTAMIC ACID
Ligand Molecules
Primary Citation
Crystal Structure of Plant Pectin Methylesterase
FEBS Lett. 514 243 ? (2002)
PMID: 11943159 DOI: 10.1016/S0014-5793(02)02372-4

Abstact

Pectin is a principal component in the primary cell wall of plants. During cell development, pectin is modified by pectin methylesterases to give different properties to the cell wall. This report describes the first crystal structure of a plant pectin methylesterase. The beta-helical structure embodies a central cleft, lined by several aromatic residues, that has been deduced to be suitable for pectin binding. The active site is found at the center of this cleft where Asp157 is suggested to act as the nucleophile, Asp136 as an acid/base and Gln113/Gln135 to form an anion hole to stabilize the transition state.

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Disease

Primary Citation of related structures