1BRG image
Deposition Date 1994-03-30
Release Date 1994-06-22
Last Version Date 2024-02-07
Entry Detail
PDB ID:
1BRG
Keywords:
Title:
CRYSTALLOGRAPHIC ANALYSIS OF PHE->LEU SUBSTITUTION IN THE HYDROPHOBIC CORE OF BARNASE
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
2.20 Å
R-Value Work:
0.16
R-Value Observed:
0.16
Space Group:
P 32
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:BARNASE
Chain IDs:A, B, C
Chain Length:108
Number of Molecules:3
Biological Source:Bacillus amyloliquefaciens
Ligand Molecules
Primary Citation
Crystallographic analysis of Phe-->Leu substitution in the hydrophobic core of barnase.
Acta Crystallogr.,Sect.D 51 220 231 (1995)
PMID: 15299323 DOI: 10.1107/S0907444994008851

Abstact

The crystal structure of a barnase mutant, Phe-->Leu7 has been determined to 2.2 A resolution. No structural rearrangement is observed near the mutated residue. The F7L mutation is highly destabilizing and this is caused by the loss of extensive van der Waals contacts that wild-type Phe7 made with its neighbouring residues, and the exposure of a large hydrophobic pocket on the surface of the protein. The side-chain conformations of the mutated Leu7 residue have torsion angles chi(1) ranging from -138 degrees to -168 degrees and chi(2) ranging from +16 degrees to +70 degrees, for the three molecules in the asymmetric unit. These angles do not agree with the most frequently observed conformations in the protein side-chain rotamer library [Ponder & Richards (1987). J. Mol. Biol. 193, 775-791]. However, when compared to a more recent 'backbone-dependent' rotamer library [Dunbrack & Karplus (1993). J. Mol. Biol. 230, 543-574], the side-chain conformation of Leu7 agrees well with that of the most frequently observed rotamers. The side-chain conformation of Leu7 was found to be dictated by two factors: it has the lowest conformational energy and it buries the most hydrophobic surface area.

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Primary Citation of related structures