Structural Complex
Chemical ID: 523
IUPAC Name: 2'-DEOXY-5-METHYLCYTIDINE 5'-(TETRAHYDROGEN TRIPHOSPHATE)
Formal Charge: 1
Type: NON-POLYMER
Substructure
Substruture Type: MurckoScaffold
SMILES: O=c1[nH]ccc[n+]1[C@H]1CCCO1
InChI: InChI=1S/C8H10N2O2/c11-8-9-4-2-5-10(8)7-3-1-6-12-7/h2,4-5,7H,1,3,6H2/p+1/t7-/m1/s1
InChI Key: AKXKPKRAUWTVBW-SSDOTTSWSA-O
Physiochemical Descriptor:
Formula: C10 H19 N3 O13 P3
Molecular weight: 482.191
Hydrogen Bond Acceptor: 14
Hydrogen Bond Donor: 7
Rotatable Bonds: 15
Heavy Atoms: 29
Systematic name
Program Version Descriptor
ACDLabs 10.04 2'-deoxy-5-methylcytidine 5'-(tetrahydrogen triphosphate)
OpenEye OEToolkits 1.5.0 [(2R,3S,5R)-5-(4-amino-5-methyl-2-oxo-3H-pyrimidin-1-ium-1-yl)-3-hydroxy-oxolan-2-yl]methyl (hydroxy-phosphonooxy-phosphoryl) hydrogen phosphate
Chemical Descriptors
Type Program Version Descriptor
SMILES ACDLabs 10.04 O=P(O)(O)OP(=O)(O)OP(=O)(O)OCC2OC([N+]=1C(=O)NC(N)=C(C=1)C)CC2O
SMILES_CANONICAL CACTVS 3.341 CC1=C(N)NC(=O)[N+](=C1)[C@H]2C[C@H](O)[C@@H](CO[P@@](O)(=O)O[P@@](O)(=O)O[P](O)(O)=O)O2
SMILES CACTVS 3.341 CC1=C(N)NC(=O)[N+](=C1)[CH]2C[CH](O)[CH](CO[P](O)(=O)O[P](O)(=O)O[P](O)(O)=O)O2
SMILES_CANONICAL OpenEye OEToolkits 1.5.0 CC1=C(NC(=O)[N+](=C1)[C@H]2C[C@@H]([C@H](O2)CO[P@](=O)(O)O[P@](=O)(O)OP(=O)(O)O)O)N
SMILES OpenEye OEToolkits 1.5.0 CC1=C(NC(=O)[N+](=C1)C2CC(C(O2)COP(=O)(O)OP(=O)(O)OP(=O)(O)O)O)N
InChI InChI 1.03 InChI=1S/C10H18N3O13P3/c1-5-3-13(10(15)12-9(5)11)8-2-6(14)7(24-8)4-23-28(19,20)26-29(21,22)25-27(16,17)18/h3,6-8,14H,2,4H2,1H3,(H6,11,12,15,16,17,18,19,20,21,22)/p+1/t6-,7+,8+/m0/s1
InChIKey InChI 1.03 VSWHQKSDLZFLRY-XLPZGREQSA-O
Chemical Database Mapping
Database Reference ID
PubChem 42627474
ZINC ZINC000103527588