data_9MDX # _entry.id 9MDX # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.403 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 9MDX pdb_00009mdx 10.2210/pdb9mdx/pdb WWPDB D_1000290713 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date _pdbx_audit_revision_history.part_number 1 'Structure model' 1 0 2025-05-14 ? 2 'Structure model' 1 1 2025-05-28 ? # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.country' 2 2 'Structure model' '_citation.journal_abbrev' 3 2 'Structure model' '_citation.journal_id_ASTM' 4 2 'Structure model' '_citation.journal_id_CSD' 5 2 'Structure model' '_citation.journal_id_ISSN' 6 2 'Structure model' '_citation.journal_volume' 7 2 'Structure model' '_citation.page_first' 8 2 'Structure model' '_citation.page_last' 9 2 'Structure model' '_citation.pdbx_database_id_DOI' 10 2 'Structure model' '_citation.pdbx_database_id_PubMed' 11 2 'Structure model' '_citation.title' 12 2 'Structure model' '_citation.year' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 9MDX _pdbx_database_status.recvd_initial_deposition_date 2024-12-05 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_contact_author.id 2 _pdbx_contact_author.email jwszostak@uchicago.edu _pdbx_contact_author.name_first Jack _pdbx_contact_author.name_last Szostak _pdbx_contact_author.name_mi W. _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0003-4131-1203 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Fang, Z.' 1 0000-0001-8679-6633 'Jia, X.' 2 0000-0001-9094-9882 'Szostak, J.W.' 3 0000-0003-4131-1203 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Proc.Natl.Acad.Sci.USA _citation.journal_id_ASTM PNASA6 _citation.journal_id_CSD 0040 _citation.journal_id_ISSN 1091-6490 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 122 _citation.language ? _citation.page_first e2505720122 _citation.page_last e2505720122 _citation.title 'Nonenzymatic RNA copying with a potentially primordial genetic alphabet.' _citation.year 2025 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1073/pnas.2505720122 _citation.pdbx_database_id_PubMed 40397670 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Fang, Z.' 1 0000-0001-8679-6633 primary 'Jia, X.' 2 0000-0001-9094-9882 primary 'Xing, Y.' 3 0000-0002-4549-8370 primary 'Szostak, J.W.' 4 0000-0003-4131-1203 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'RNA strand with s(2)U:A pair sequence 1' 5099.129 1 ? ? ? ? 2 water nat water 18.015 78 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code 'AGAGAAGAUCU(SUR)CUCU' _entity_poly.pdbx_seq_one_letter_code_can AGAGAAGAUCUUCUCU _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 A n 1 2 G n 1 3 A n 1 4 G n 1 5 A n 1 6 A n 1 7 G n 1 8 A n 1 9 U n 1 10 C n 1 11 U n 1 12 SUR n 1 13 C n 1 14 U n 1 15 C n 1 16 U n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 16 _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 HOH non-polymer . WATER ? 'H2 O' 18.015 SUR 'RNA linking' n "1-(BETA-D-RIBOFURANOSYL)-2-THIO-URACIL-5'-PHOSPHATE" ? 'C9 H13 N2 O8 P S' 340.247 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 A 1 1 1 A A A . n A 1 2 G 2 2 2 G G A . n A 1 3 A 3 3 3 A A A . n A 1 4 G 4 4 4 G G A . n A 1 5 A 5 5 5 A A A . n A 1 6 A 6 6 6 A A A . n A 1 7 G 7 7 7 G G A . n A 1 8 A 8 8 8 A A A . n A 1 9 U 9 9 9 U U A . n A 1 10 C 10 10 10 C C A . n A 1 11 U 11 11 11 U U A . n A 1 12 SUR 12 12 12 SUR SUR A . n A 1 13 C 13 13 13 C C A . n A 1 14 U 14 14 14 U U A . n A 1 15 C 15 15 15 C C A . n A 1 16 U 16 16 16 U U A . n # _pdbx_entity_instance_feature.ordinal 1 _pdbx_entity_instance_feature.comp_id SUR _pdbx_entity_instance_feature.asym_id ? _pdbx_entity_instance_feature.seq_num ? _pdbx_entity_instance_feature.auth_comp_id SUR _pdbx_entity_instance_feature.auth_asym_id ? _pdbx_entity_instance_feature.auth_seq_num ? _pdbx_entity_instance_feature.feature_type 'SUBJECT OF INVESTIGATION' _pdbx_entity_instance_feature.details ? # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HOH 1 101 57 HOH HOH A . B 2 HOH 2 102 79 HOH HOH A . B 2 HOH 3 103 70 HOH HOH A . B 2 HOH 4 104 64 HOH HOH A . B 2 HOH 5 105 66 HOH HOH A . B 2 HOH 6 106 21 HOH HOH A . B 2 HOH 7 107 34 HOH HOH A . B 2 HOH 8 108 45 HOH HOH A . B 2 HOH 9 109 49 HOH HOH A . B 2 HOH 10 110 63 HOH HOH A . B 2 HOH 11 111 51 HOH HOH A . B 2 HOH 12 112 36 HOH HOH A . B 2 HOH 13 113 9 HOH HOH A . B 2 HOH 14 114 13 HOH HOH A . B 2 HOH 15 115 61 HOH HOH A . B 2 HOH 16 116 53 HOH HOH A . B 2 HOH 17 117 23 HOH HOH A . B 2 HOH 18 118 14 HOH HOH A . B 2 HOH 19 119 2 HOH HOH A . B 2 HOH 20 120 15 HOH HOH A . B 2 HOH 21 121 24 HOH HOH A . B 2 HOH 22 122 46 HOH HOH A . B 2 HOH 23 123 37 HOH HOH A . B 2 HOH 24 124 54 HOH HOH A . B 2 HOH 25 125 72 HOH HOH A . B 2 HOH 26 126 1 HOH HOH A . B 2 HOH 27 127 55 HOH HOH A . B 2 HOH 28 128 33 HOH HOH A . B 2 HOH 29 129 7 HOH HOH A . B 2 HOH 30 130 56 HOH HOH A . B 2 HOH 31 131 76 HOH HOH A . B 2 HOH 32 132 69 HOH HOH A . B 2 HOH 33 133 20 HOH HOH A . B 2 HOH 34 134 58 HOH HOH A . B 2 HOH 35 135 8 HOH HOH A . B 2 HOH 36 136 39 HOH HOH A . B 2 HOH 37 137 71 HOH HOH A . B 2 HOH 38 138 50 HOH HOH A . B 2 HOH 39 139 28 HOH HOH A . B 2 HOH 40 140 73 HOH HOH A . B 2 HOH 41 141 42 HOH HOH A . B 2 HOH 42 142 38 HOH HOH A . B 2 HOH 43 143 25 HOH HOH A . B 2 HOH 44 144 11 HOH HOH A . B 2 HOH 45 145 26 HOH HOH A . B 2 HOH 46 146 35 HOH HOH A . B 2 HOH 47 147 6 HOH HOH A . B 2 HOH 48 148 78 HOH HOH A . B 2 HOH 49 149 17 HOH HOH A . B 2 HOH 50 150 31 HOH HOH A . B 2 HOH 51 151 74 HOH HOH A . B 2 HOH 52 152 19 HOH HOH A . B 2 HOH 53 153 48 HOH HOH A . B 2 HOH 54 154 29 HOH HOH A . B 2 HOH 55 155 22 HOH HOH A . B 2 HOH 56 156 4 HOH HOH A . B 2 HOH 57 157 62 HOH HOH A . B 2 HOH 58 158 32 HOH HOH A . B 2 HOH 59 159 68 HOH HOH A . B 2 HOH 60 160 27 HOH HOH A . B 2 HOH 61 161 30 HOH HOH A . B 2 HOH 62 162 60 HOH HOH A . B 2 HOH 63 163 5 HOH HOH A . B 2 HOH 64 164 18 HOH HOH A . B 2 HOH 65 165 41 HOH HOH A . B 2 HOH 66 166 10 HOH HOH A . B 2 HOH 67 167 67 HOH HOH A . B 2 HOH 68 168 47 HOH HOH A . B 2 HOH 69 169 16 HOH HOH A . B 2 HOH 70 170 52 HOH HOH A . B 2 HOH 71 171 40 HOH HOH A . B 2 HOH 72 172 77 HOH HOH A . B 2 HOH 73 173 65 HOH HOH A . B 2 HOH 74 174 75 HOH HOH A . B 2 HOH 75 175 44 HOH HOH A . B 2 HOH 76 176 43 HOH HOH A . B 2 HOH 77 177 12 HOH HOH A . B 2 HOH 78 178 3 HOH HOH A . # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? REFMAC ? ? ? 5.8.0425 1 ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.18.2_3874 2 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 3 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 4 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 5 # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.000 _cell.angle_beta_esd ? _cell.angle_gamma 120.000 _cell.angle_gamma_esd ? _cell.entry_id 9MDX _cell.details ? _cell.formula_units_Z ? _cell.length_a 41.381 _cell.length_a_esd ? _cell.length_b 41.381 _cell.length_b_esd ? _cell.length_c 124.071 _cell.length_c_esd ? _cell.volume 183993.668 _cell.volume_esd ? _cell.Z_PDB 18 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 9MDX _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ;R 3 2" ; _symmetry.space_group_name_H-M 'H 3 2' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 9MDX _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.00 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 38.64 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? _exptl_crystal.pdbx_mosaic_method ? _exptl_crystal.pdbx_mosaic_block_size ? _exptl_crystal.pdbx_mosaic_block_size_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '2.4 M Sodium malonate pH 7.0' _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.temp 298 # _diffrn.ambient_environment ? _diffrn.ambient_temp 99 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS PILATUS3 2M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2024-10-30 _diffrn_detector.pdbx_frequency ? _diffrn_detector.id ? _diffrn_detector.number_of_axes ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97741 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'ALS BEAMLINE 5.0.1' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.97741 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 5.0.1 _diffrn_source.pdbx_synchrotron_site ALS # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 9MDX _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.499 _reflns.d_resolution_low 50 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 6663 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 96.6 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 9.5 _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 34.6 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared 0.971 _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.060 _reflns.pdbx_Rpim_I_all 0.020 _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 1.0 _reflns.pdbx_CC_star 1.0 _reflns.pdbx_R_split ? _reflns.pdbx_Rmerge_I_obs 0.057 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_CC_split_method ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_1 ? _reflns.pdbx_aniso_diffraction_limit_2 ? _reflns.pdbx_aniso_diffraction_limit_3 ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvalue_1 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_2 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_3 ? _reflns.pdbx_orthogonalization_convention ? _reflns.pdbx_percent_possible_ellipsoidal ? _reflns.pdbx_percent_possible_spherical ? _reflns.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns.pdbx_percent_possible_spherical_anomalous ? _reflns.pdbx_redundancy_anomalous ? _reflns.pdbx_CC_half_anomalous ? _reflns.pdbx_absDiff_over_sigma_anomalous ? _reflns.pdbx_percent_possible_anomalous ? _reflns.pdbx_observed_signal_threshold ? _reflns.pdbx_signal_type ? _reflns.pdbx_signal_details ? _reflns.pdbx_signal_software_id ? # _reflns_shell.d_res_high 1.50 _reflns_shell.d_res_low 1.53 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 4.8 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 323 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 9.5 _reflns_shell.pdbx_chi_squared 0.910 _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all 0.500 _reflns_shell.pdbx_Rpim_I_all 0.159 _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.907 _reflns_shell.pdbx_CC_star 0.975 _reflns_shell.pdbx_R_split ? _reflns_shell.percent_possible_all 95.3 _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 0.473 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_percent_possible_ellipsoidal ? _reflns_shell.pdbx_percent_possible_spherical ? _reflns_shell.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns_shell.pdbx_percent_possible_spherical_anomalous ? _reflns_shell.pdbx_redundancy_anomalous ? _reflns_shell.pdbx_CC_half_anomalous ? _reflns_shell.pdbx_absDiff_over_sigma_anomalous ? _reflns_shell.pdbx_percent_possible_anomalous ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean 12.90 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 9MDX _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.50 _refine.ls_d_res_low 34.43 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 6647 _refine.ls_number_reflns_R_free 338 _refine.ls_number_reflns_R_work 6309 _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 96.38 _refine.ls_percent_reflns_R_free 5.09 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1904 _refine.ls_R_factor_R_free 0.2409 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.1880 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.39 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values 'GeoStd + Monomer Library + CDL v1.2' _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.1100 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 21.7075 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.1297 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.details ? _refine_hist.d_res_high 1.50 _refine_hist.d_res_low 34.43 _refine_hist.number_atoms_solvent 78 _refine_hist.number_atoms_total 414 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total ? _refine_hist.pdbx_B_iso_mean_ligand ? _refine_hist.pdbx_B_iso_mean_solvent ? _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 336 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.0049 ? 375 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 0.9769 ? 582 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.0335 ? 78 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.0087 ? 16 ? f_plane_restr ? ? 'X-RAY DIFFRACTION' ? 5.9553 ? 180 ? f_dihedral_angle_d ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_R_complete _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free _refine_ls_shell.R_factor_R_free 'X-RAY DIFFRACTION' 1.50 1.89 . . 167 3067 95.57 . . . . 0.1930 . . . . . . . . . . . 0.2341 'X-RAY DIFFRACTION' 1.89 34.43 . . 171 3242 97.18 . . . . 0.1861 . . . . . . . . . . . 0.2442 # _struct.entry_id 9MDX _struct.title '16mer self-complementary duplex RNA with s(2)U:A pair sequence 1' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 9MDX _struct_keywords.text '2-Thiouridine, Nucleobase modification, Non-canonical Base Pair, RNA, Orgin of Life' _struct_keywords.pdbx_keywords RNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 9MDX _struct_ref.pdbx_db_accession 9MDX _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 9MDX _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 16 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 9MDX _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 16 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 16 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 2590 ? 1 MORE -2 ? 1 'SSA (A^2)' 5600 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 4_555 y,x,-z -0.5000000000 0.8660254038 0.0000000000 0.0000000000 0.8660254038 0.5000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A U 11 "O3'" ? ? ? 1_555 A SUR 12 P ? ? A U 11 A SUR 12 1_555 ? ? ? ? ? ? ? 1.607 ? ? covale2 covale both ? A SUR 12 "O3'" ? ? ? 1_555 A C 13 P ? ? A SUR 12 A C 13 1_555 ? ? ? ? ? ? ? 1.597 ? ? hydrog1 hydrog ? ? A A 1 N1 ? ? ? 1_555 A U 16 N3 ? ? A A 1 A U 16 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A A 1 N6 ? ? ? 1_555 A U 16 O4 ? ? A A 1 A U 16 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A G 2 N1 ? ? ? 1_555 A C 15 N3 ? ? A G 2 A C 15 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A G 2 N2 ? ? ? 1_555 A C 15 O2 ? ? A G 2 A C 15 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A G 2 O6 ? ? ? 1_555 A C 15 N4 ? ? A G 2 A C 15 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A A 3 N1 ? ? ? 1_555 A U 14 N3 ? ? A A 3 A U 14 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A A 3 N6 ? ? ? 1_555 A U 14 O4 ? ? A A 3 A U 14 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A G 4 N1 ? ? ? 1_555 A C 13 N3 ? ? A G 4 A C 13 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A G 4 N2 ? ? ? 1_555 A C 13 O2 ? ? A G 4 A C 13 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A G 4 O6 ? ? ? 1_555 A C 13 N4 ? ? A G 4 A C 13 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A A 5 N1 ? ? ? 1_555 A SUR 12 N3 ? ? A A 5 A SUR 12 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A A 5 N6 ? ? ? 1_555 A SUR 12 O4 ? ? A A 5 A SUR 12 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A A 6 N1 ? ? ? 1_555 A U 11 N3 ? ? A A 6 A U 11 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A A 6 N6 ? ? ? 1_555 A U 11 O4 ? ? A A 6 A U 11 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A G 7 N1 ? ? ? 1_555 A C 10 N3 ? ? A G 7 A C 10 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A G 7 N2 ? ? ? 1_555 A C 10 O2 ? ? A G 7 A C 10 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A G 7 O6 ? ? ? 1_555 A C 10 N4 ? ? A G 7 A C 10 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A A 8 N1 ? ? ? 1_555 A U 9 N3 ? ? A A 8 A U 9 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A A 8 N6 ? ? ? 1_555 A U 9 O4 ? ? A A 8 A U 9 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A U 9 N3 ? ? ? 1_555 A A 8 N1 ? ? A U 9 A A 8 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A U 9 O4 ? ? ? 1_555 A A 8 N6 ? ? A U 9 A A 8 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A C 10 N3 ? ? ? 1_555 A G 7 N1 ? ? A C 10 A G 7 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A C 10 N4 ? ? ? 1_555 A G 7 O6 ? ? A C 10 A G 7 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A C 10 O2 ? ? ? 1_555 A G 7 N2 ? ? A C 10 A G 7 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A U 11 N3 ? ? ? 1_555 A A 6 N1 ? ? A U 11 A A 6 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A U 11 O4 ? ? ? 1_555 A A 6 N6 ? ? A U 11 A A 6 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A SUR 12 N3 ? ? ? 1_555 A A 5 N1 ? ? A SUR 12 A A 5 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A SUR 12 O4 ? ? ? 1_555 A A 5 N6 ? ? A SUR 12 A A 5 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A C 13 N3 ? ? ? 1_555 A G 4 N1 ? ? A C 13 A G 4 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A C 13 N4 ? ? ? 1_555 A G 4 O6 ? ? A C 13 A G 4 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A C 13 O2 ? ? ? 1_555 A G 4 N2 ? ? A C 13 A G 4 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A U 14 N3 ? ? ? 1_555 A A 3 N1 ? ? A U 14 A A 3 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A U 14 O4 ? ? ? 1_555 A A 3 N6 ? ? A U 14 A A 3 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A C 15 N3 ? ? ? 1_555 A G 2 N1 ? ? A C 15 A G 2 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A C 15 N4 ? ? ? 1_555 A G 2 O6 ? ? A C 15 A G 2 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A C 15 O2 ? ? ? 1_555 A G 2 N2 ? ? A C 15 A G 2 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A U 16 N3 ? ? ? 1_555 A A 1 N1 ? ? A U 16 A A 1 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A U 16 O4 ? ? ? 1_555 A A 1 N6 ? ? A U 16 A A 1 4_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # _pdbx_entry_details.entry_id 9MDX _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.has_protein_modification N # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A HOH 103 ? B HOH . 2 1 A HOH 128 ? B HOH . 3 1 A HOH 150 ? B HOH . 4 1 A HOH 154 ? B HOH . 5 1 A HOH 158 ? B HOH . 6 1 A HOH 161 ? B HOH . # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 C OP3 O N N 38 C P P N N 39 C OP1 O N N 40 C OP2 O N N 41 C "O5'" O N N 42 C "C5'" C N N 43 C "C4'" C N R 44 C "O4'" O N N 45 C "C3'" C N S 46 C "O3'" O N N 47 C "C2'" C N R 48 C "O2'" O N N 49 C "C1'" C N R 50 C N1 N N N 51 C C2 C N N 52 C O2 O N N 53 C N3 N N N 54 C C4 C N N 55 C N4 N N N 56 C C5 C N N 57 C C6 C N N 58 C HOP3 H N N 59 C HOP2 H N N 60 C "H5'" H N N 61 C "H5''" H N N 62 C "H4'" H N N 63 C "H3'" H N N 64 C "HO3'" H N N 65 C "H2'" H N N 66 C "HO2'" H N N 67 C "H1'" H N N 68 C H41 H N N 69 C H42 H N N 70 C H5 H N N 71 C H6 H N N 72 G OP3 O N N 73 G P P N N 74 G OP1 O N N 75 G OP2 O N N 76 G "O5'" O N N 77 G "C5'" C N N 78 G "C4'" C N R 79 G "O4'" O N N 80 G "C3'" C N S 81 G "O3'" O N N 82 G "C2'" C N R 83 G "O2'" O N N 84 G "C1'" C N R 85 G N9 N Y N 86 G C8 C Y N 87 G N7 N Y N 88 G C5 C Y N 89 G C6 C N N 90 G O6 O N N 91 G N1 N N N 92 G C2 C N N 93 G N2 N N N 94 G N3 N N N 95 G C4 C Y N 96 G HOP3 H N N 97 G HOP2 H N N 98 G "H5'" H N N 99 G "H5''" H N N 100 G "H4'" H N N 101 G "H3'" H N N 102 G "HO3'" H N N 103 G "H2'" H N N 104 G "HO2'" H N N 105 G "H1'" H N N 106 G H8 H N N 107 G H1 H N N 108 G H21 H N N 109 G H22 H N N 110 HOH O O N N 111 HOH H1 H N N 112 HOH H2 H N N 113 SUR P P N N 114 SUR OP1 O N N 115 SUR OP2 O N N 116 SUR OP3 O N N 117 SUR "O5'" O N N 118 SUR "C5'" C N N 119 SUR "C4'" C N R 120 SUR "O4'" O N N 121 SUR "C3'" C N S 122 SUR "C1'" C N R 123 SUR N1 N N N 124 SUR "C2'" C N R 125 SUR C6 C N N 126 SUR C2 C N N 127 SUR C5 C N N 128 SUR S2 S N N 129 SUR N3 N N N 130 SUR C4 C N N 131 SUR O4 O N N 132 SUR "O2'" O N N 133 SUR "O3'" O N N 134 SUR HOP1 H N N 135 SUR HOP3 H N N 136 SUR "H5'1" H N N 137 SUR "H5'2" H N N 138 SUR "H4'" H N N 139 SUR "H3'" H N N 140 SUR "H1'" H N N 141 SUR "H2'" H N N 142 SUR HC6 H N N 143 SUR HC5 H N N 144 SUR HN3 H N N 145 SUR HO2 H N N 146 SUR HO3 H N N 147 U OP3 O N N 148 U P P N N 149 U OP1 O N N 150 U OP2 O N N 151 U "O5'" O N N 152 U "C5'" C N N 153 U "C4'" C N R 154 U "O4'" O N N 155 U "C3'" C N S 156 U "O3'" O N N 157 U "C2'" C N R 158 U "O2'" O N N 159 U "C1'" C N R 160 U N1 N N N 161 U C2 C N N 162 U O2 O N N 163 U N3 N N N 164 U C4 C N N 165 U O4 O N N 166 U C5 C N N 167 U C6 C N N 168 U HOP3 H N N 169 U HOP2 H N N 170 U "H5'" H N N 171 U "H5''" H N N 172 U "H4'" H N N 173 U "H3'" H N N 174 U "HO3'" H N N 175 U "H2'" H N N 176 U "HO2'" H N N 177 U "H1'" H N N 178 U H3 H N N 179 U H5 H N N 180 U H6 H N N 181 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 C OP3 P sing N N 40 C OP3 HOP3 sing N N 41 C P OP1 doub N N 42 C P OP2 sing N N 43 C P "O5'" sing N N 44 C OP2 HOP2 sing N N 45 C "O5'" "C5'" sing N N 46 C "C5'" "C4'" sing N N 47 C "C5'" "H5'" sing N N 48 C "C5'" "H5''" sing N N 49 C "C4'" "O4'" sing N N 50 C "C4'" "C3'" sing N N 51 C "C4'" "H4'" sing N N 52 C "O4'" "C1'" sing N N 53 C "C3'" "O3'" sing N N 54 C "C3'" "C2'" sing N N 55 C "C3'" "H3'" sing N N 56 C "O3'" "HO3'" sing N N 57 C "C2'" "O2'" sing N N 58 C "C2'" "C1'" sing N N 59 C "C2'" "H2'" sing N N 60 C "O2'" "HO2'" sing N N 61 C "C1'" N1 sing N N 62 C "C1'" "H1'" sing N N 63 C N1 C2 sing N N 64 C N1 C6 sing N N 65 C C2 O2 doub N N 66 C C2 N3 sing N N 67 C N3 C4 doub N N 68 C C4 N4 sing N N 69 C C4 C5 sing N N 70 C N4 H41 sing N N 71 C N4 H42 sing N N 72 C C5 C6 doub N N 73 C C5 H5 sing N N 74 C C6 H6 sing N N 75 G OP3 P sing N N 76 G OP3 HOP3 sing N N 77 G P OP1 doub N N 78 G P OP2 sing N N 79 G P "O5'" sing N N 80 G OP2 HOP2 sing N N 81 G "O5'" "C5'" sing N N 82 G "C5'" "C4'" sing N N 83 G "C5'" "H5'" sing N N 84 G "C5'" "H5''" sing N N 85 G "C4'" "O4'" sing N N 86 G "C4'" "C3'" sing N N 87 G "C4'" "H4'" sing N N 88 G "O4'" "C1'" sing N N 89 G "C3'" "O3'" sing N N 90 G "C3'" "C2'" sing N N 91 G "C3'" "H3'" sing N N 92 G "O3'" "HO3'" sing N N 93 G "C2'" "O2'" sing N N 94 G "C2'" "C1'" sing N N 95 G "C2'" "H2'" sing N N 96 G "O2'" "HO2'" sing N N 97 G "C1'" N9 sing N N 98 G "C1'" "H1'" sing N N 99 G N9 C8 sing Y N 100 G N9 C4 sing Y N 101 G C8 N7 doub Y N 102 G C8 H8 sing N N 103 G N7 C5 sing Y N 104 G C5 C6 sing N N 105 G C5 C4 doub Y N 106 G C6 O6 doub N N 107 G C6 N1 sing N N 108 G N1 C2 sing N N 109 G N1 H1 sing N N 110 G C2 N2 sing N N 111 G C2 N3 doub N N 112 G N2 H21 sing N N 113 G N2 H22 sing N N 114 G N3 C4 sing N N 115 HOH O H1 sing N N 116 HOH O H2 sing N N 117 SUR P OP1 sing N N 118 SUR P OP2 doub N N 119 SUR P OP3 sing N N 120 SUR P "O5'" sing N N 121 SUR OP1 HOP1 sing N N 122 SUR OP3 HOP3 sing N N 123 SUR "O5'" "C5'" sing N N 124 SUR "C5'" "C4'" sing N N 125 SUR "C5'" "H5'1" sing N N 126 SUR "C5'" "H5'2" sing N N 127 SUR "C4'" "O4'" sing N N 128 SUR "C4'" "C3'" sing N N 129 SUR "C4'" "H4'" sing N N 130 SUR "O4'" "C1'" sing N N 131 SUR "C3'" "C2'" sing N N 132 SUR "C3'" "O3'" sing N N 133 SUR "C3'" "H3'" sing N N 134 SUR "C1'" N1 sing N N 135 SUR "C1'" "C2'" sing N N 136 SUR "C1'" "H1'" sing N N 137 SUR N1 C6 sing N N 138 SUR N1 C2 sing N N 139 SUR "C2'" "O2'" sing N N 140 SUR "C2'" "H2'" sing N N 141 SUR C6 C5 doub N N 142 SUR C6 HC6 sing N N 143 SUR C2 S2 doub N N 144 SUR C2 N3 sing N N 145 SUR C5 C4 sing N N 146 SUR C5 HC5 sing N N 147 SUR N3 C4 sing N N 148 SUR N3 HN3 sing N N 149 SUR C4 O4 doub N N 150 SUR "O2'" HO2 sing N N 151 SUR "O3'" HO3 sing N N 152 U OP3 P sing N N 153 U OP3 HOP3 sing N N 154 U P OP1 doub N N 155 U P OP2 sing N N 156 U P "O5'" sing N N 157 U OP2 HOP2 sing N N 158 U "O5'" "C5'" sing N N 159 U "C5'" "C4'" sing N N 160 U "C5'" "H5'" sing N N 161 U "C5'" "H5''" sing N N 162 U "C4'" "O4'" sing N N 163 U "C4'" "C3'" sing N N 164 U "C4'" "H4'" sing N N 165 U "O4'" "C1'" sing N N 166 U "C3'" "O3'" sing N N 167 U "C3'" "C2'" sing N N 168 U "C3'" "H3'" sing N N 169 U "O3'" "HO3'" sing N N 170 U "C2'" "O2'" sing N N 171 U "C2'" "C1'" sing N N 172 U "C2'" "H2'" sing N N 173 U "O2'" "HO2'" sing N N 174 U "C1'" N1 sing N N 175 U "C1'" "H1'" sing N N 176 U N1 C2 sing N N 177 U N1 C6 sing N N 178 U C2 O2 doub N N 179 U C2 N3 sing N N 180 U N3 C4 sing N N 181 U N3 H3 sing N N 182 U C4 O4 doub N N 183 U C4 C5 sing N N 184 U C5 C6 doub N N 185 U C5 H5 sing N N 186 U C6 H6 sing N N 187 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 9MDX 'a-form double helix' 9MDX 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A A 1 1_555 A U 16 4_555 -0.042 -0.148 0.146 -0.358 -9.795 -0.564 1 A_A1:U16_A A 1 ? A 16 ? 20 1 1 A G 2 1_555 A C 15 4_555 -0.191 -0.209 0.170 -0.112 -13.442 -2.145 2 A_G2:C15_A A 2 ? A 15 ? 19 1 1 A A 3 1_555 A U 14 4_555 0.029 -0.135 0.163 -0.742 -14.957 2.728 3 A_A3:U14_A A 3 ? A 14 ? 20 1 1 A G 4 1_555 A C 13 4_555 -0.257 -0.186 0.004 -2.452 -10.834 -2.462 4 A_G4:C13_A A 4 ? A 13 ? 19 1 1 A A 5 1_555 A SUR 12 4_555 0.175 -0.199 0.036 0.776 -9.034 -0.492 5 A_A5:SUR12_A A 5 ? A 12 ? 20 1 1 A A 6 1_555 A U 11 4_555 -0.403 -0.096 -0.071 -4.373 -15.487 4.366 6 A_A6:U11_A A 6 ? A 11 ? 20 1 1 A G 7 1_555 A C 10 4_555 -0.156 -0.091 0.078 -0.374 -9.629 1.681 7 A_G7:C10_A A 7 ? A 10 ? 19 1 1 A A 8 1_555 A U 9 4_555 -0.096 -0.169 -0.056 -1.399 -17.316 1.865 8 A_A8:U9_A A 8 ? A 9 ? 20 1 1 A U 9 1_555 A A 8 4_555 0.096 -0.169 -0.056 1.399 -17.316 1.865 9 A_U9:A8_A A 9 ? A 8 ? 20 1 1 A C 10 1_555 A G 7 4_555 0.156 -0.091 0.078 0.374 -9.629 1.681 10 A_C10:G7_A A 10 ? A 7 ? 19 1 1 A U 11 1_555 A A 6 4_555 0.403 -0.096 -0.071 4.373 -15.487 4.366 11 A_U11:A6_A A 11 ? A 6 ? 20 1 1 A SUR 12 1_555 A A 5 4_555 -0.175 -0.199 0.036 -0.776 -9.034 -0.492 12 A_SUR12:A5_A A 12 ? A 5 ? 20 1 1 A C 13 1_555 A G 4 4_555 0.257 -0.186 0.004 2.452 -10.834 -2.462 13 A_C13:G4_A A 13 ? A 4 ? 19 1 1 A U 14 1_555 A A 3 4_555 -0.029 -0.135 0.163 0.742 -14.957 2.728 14 A_U14:A3_A A 14 ? A 3 ? 20 1 1 A C 15 1_555 A G 2 4_555 0.191 -0.209 0.170 0.112 -13.442 -2.145 15 A_C15:G2_A A 15 ? A 2 ? 19 1 1 A U 16 1_555 A A 1 4_555 0.042 -0.148 0.146 0.358 -9.795 -0.564 16 A_U16:A1_A A 16 ? A 1 ? 20 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A A 1 1_555 A U 16 4_555 A G 2 1_555 A C 15 4_555 -0.510 -1.213 3.158 -1.663 6.581 34.107 -2.971 0.616 2.901 11.084 2.801 34.756 1 AA_A1G2:C15U16_AA A 1 ? A 16 ? A 2 ? A 15 ? 1 A G 2 1_555 A C 15 4_555 A A 3 1_555 A U 14 4_555 0.821 -1.398 3.177 2.113 5.381 33.637 -3.190 -1.082 2.969 9.213 -3.618 34.116 2 AA_G2A3:U14C15_AA A 2 ? A 15 ? A 3 ? A 14 ? 1 A A 3 1_555 A U 14 4_555 A G 4 1_555 A C 13 4_555 -0.751 -1.435 3.215 -1.790 10.223 33.538 -3.804 0.998 2.710 17.212 3.013 35.063 3 AA_A3G4:C13U14_AA A 3 ? A 14 ? A 4 ? A 13 ? 1 A G 4 1_555 A C 13 4_555 A A 5 1_555 A SUR 12 4_555 0.251 -1.560 3.180 0.370 9.969 29.852 -4.556 -0.401 2.543 18.705 -0.695 31.438 4 AA_G4A5:SUR12C13_AA A 4 ? A 13 ? A 5 ? A 12 ? 1 A A 5 1_555 A SUR 12 4_555 A A 6 1_555 A U 11 4_555 1.033 -1.988 3.251 3.197 15.313 30.192 -5.552 -1.323 2.121 27.222 -5.684 33.920 5 AA_A5A6:U11SUR12_AA A 5 ? A 12 ? A 6 ? A 11 ? 1 A A 6 1_555 A U 11 4_555 A G 7 1_555 A C 10 4_555 -0.627 -1.846 3.054 -2.937 8.083 27.593 -5.259 0.692 2.477 16.449 5.976 28.878 6 AA_A6G7:C10U11_AA A 6 ? A 11 ? A 7 ? A 10 ? 1 A G 7 1_555 A C 10 4_555 A A 8 1_555 A U 9 4_555 -0.236 -1.609 3.258 0.664 5.772 32.157 -3.814 0.529 2.927 10.315 -1.187 32.664 7 AA_G7A8:U9C10_AA A 7 ? A 10 ? A 8 ? A 9 ? 1 A A 8 1_555 A U 9 4_555 A U 9 1_555 A A 8 4_555 0.000 -1.113 3.086 0.000 4.291 32.906 -2.614 0.000 2.922 7.536 0.000 33.177 8 AA_A8U9:A8U9_AA A 8 ? A 9 ? A 9 ? A 8 ? 1 A U 9 1_555 A A 8 4_555 A C 10 1_555 A G 7 4_555 0.236 -1.609 3.258 -0.664 5.772 32.157 -3.814 -0.529 2.927 10.315 1.187 32.664 9 AA_U9C10:G7A8_AA A 9 ? A 8 ? A 10 ? A 7 ? 1 A C 10 1_555 A G 7 4_555 A U 11 1_555 A A 6 4_555 0.627 -1.846 3.054 2.937 8.083 27.593 -5.259 -0.692 2.477 16.449 -5.976 28.878 10 AA_C10U11:A6G7_AA A 10 ? A 7 ? A 11 ? A 6 ? 1 A U 11 1_555 A A 6 4_555 A SUR 12 1_555 A A 5 4_555 -1.033 -1.988 3.251 -3.197 15.313 30.192 -5.552 1.323 2.121 27.222 5.684 33.920 11 AA_U11SUR12:A5A6_AA A 11 ? A 6 ? A 12 ? A 5 ? 1 A SUR 12 1_555 A A 5 4_555 A C 13 1_555 A G 4 4_555 -0.251 -1.560 3.180 -0.370 9.969 29.852 -4.556 0.401 2.543 18.705 0.695 31.438 12 AA_SUR12C13:G4A5_AA A 12 ? A 5 ? A 13 ? A 4 ? 1 A C 13 1_555 A G 4 4_555 A U 14 1_555 A A 3 4_555 0.751 -1.435 3.215 1.790 10.223 33.538 -3.804 -0.998 2.710 17.212 -3.013 35.063 13 AA_C13U14:A3G4_AA A 13 ? A 4 ? A 14 ? A 3 ? 1 A U 14 1_555 A A 3 4_555 A C 15 1_555 A G 2 4_555 -0.821 -1.398 3.177 -2.113 5.381 33.637 -3.190 1.082 2.969 9.213 3.618 34.116 14 AA_U14C15:G2A3_AA A 14 ? A 3 ? A 15 ? A 2 ? 1 A C 15 1_555 A G 2 4_555 A U 16 1_555 A A 1 4_555 0.510 -1.213 3.158 1.663 6.581 34.107 -2.971 -0.616 2.901 11.084 -2.801 34.756 15 AA_C15U16:A1G2_AA A 15 ? A 2 ? A 16 ? A 1 ? # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'National Science Foundation (NSF, United States)' 'United States' 2104708 1 'Howard Hughes Medical Institute (HHMI)' 'United States' ? 2 # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 3nd4 _pdbx_initial_refinement_model.details ? # _atom_sites.entry_id 9MDX _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 0.024166 _atom_sites.fract_transf_matrix[1][2] 0.013952 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.027904 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.008060 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol _atom_type.pdbx_scat_Z _atom_type.pdbx_N_electrons _atom_type.scat_Cromer_Mann_a1 _atom_type.scat_Cromer_Mann_b1 _atom_type.scat_Cromer_Mann_a2 _atom_type.scat_Cromer_Mann_b2 _atom_type.scat_Cromer_Mann_a3 _atom_type.scat_Cromer_Mann_b3 _atom_type.scat_Cromer_Mann_a4 _atom_type.scat_Cromer_Mann_b4 _atom_type.scat_Cromer_Mann_c C 6 6 2.3103 20.8439 1.0201 10.2075 1.5888 0.5687 0.8651 51.6512 0.2156 H 1 1 0.4930 10.5109 0.3229 26.1257 0.1402 3.1424 0.0408 57.7997 0.0030 N 7 7 12.2220 0.0057 3.1346 9.8933 2.0141 28.9975 1.1672 0.5826 -11.5379 O 8 8 3.0487 13.2771 2.2870 5.7011 1.5464 0.3239 0.8671 32.9089 0.2508 P 15 15 6.4348 1.9067 4.1793 27.1570 1.7801 0.5260 1.4909 68.1645 1.1150 S 16 16 6.9054 1.4679 5.2035 22.2151 1.4379 0.2536 1.5863 56.1720 0.8669 # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_alt_id _atom_site.label_comp_id _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.label_seq_id _atom_site.pdbx_PDB_ins_code _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_seq_id _atom_site.auth_comp_id _atom_site.auth_asym_id _atom_site.auth_atom_id _atom_site.pdbx_PDB_model_num _atom_site.calc_flag ATOM 1 O "O5'" . A A 1 1 ? 1.23668 12.95201 15.80455 1.000 14.86431 ? 1 A A "O5'" 1 ? ATOM 2 C "C5'" . A A 1 1 ? -0.06644 13.51372 15.76477 1.000 12.54637 ? 1 A A "C5'" 1 ? ATOM 3 C "C4'" . A A 1 1 ? -0.09887 14.90888 16.33512 1.000 10.54243 ? 1 A A "C4'" 1 ? ATOM 4 O "O4'" . A A 1 1 ? 0.40617 14.91061 17.69012 1.000 9.99313 ? 1 A A "O4'" 1 ? ATOM 5 C "C3'" . A A 1 1 ? 0.74873 15.94546 15.62103 1.000 10.94790 ? 1 A A "C3'" 1 ? ATOM 6 O "O3'" . A A 1 1 ? 0.07159 16.46687 14.50430 1.000 12.80659 ? 1 A A "O3'" 1 ? ATOM 7 C "C2'" . A A 1 1 ? 0.98873 16.97698 16.70375 1.000 9.88184 ? 1 A A "C2'" 1 ? ATOM 8 O "O2'" . A A 1 1 ? -0.18664 17.75324 16.90962 1.000 9.40929 ? 1 A A "O2'" 1 ? ATOM 9 C "C1'" . A A 1 1 ? 1.15576 16.07896 17.91853 1.000 8.25145 ? 1 A A "C1'" 1 ? ATOM 10 N N9 . A A 1 1 ? 2.54069 15.65657 18.17022 1.000 7.58122 ? 1 A A N9 1 ? ATOM 11 C C8 . A A 1 1 ? 3.02720 14.38082 18.05899 1.000 8.34904 ? 1 A A C8 1 ? ATOM 12 N N7 . A A 1 1 ? 4.27946 14.25739 18.41893 1.000 9.80849 ? 1 A A N7 1 ? ATOM 13 C C5 . A A 1 1 ? 4.62989 15.53987 18.81177 1.000 6.40520 ? 1 A A C5 1 ? ATOM 14 C C6 . A A 1 1 ? 5.83867 16.06345 19.30062 1.000 5.44142 ? 1 A A C6 1 ? ATOM 15 N N6 . A A 1 1 ? 6.93662 15.33426 19.48686 1.000 7.59874 ? 1 A A N6 1 ? ATOM 16 N N1 . A A 1 1 ? 5.85194 17.38116 19.59782 1.000 7.40201 ? 1 A A N1 1 ? ATOM 17 C C2 . A A 1 1 ? 4.74320 18.10786 19.41055 1.000 6.22397 ? 1 A A C2 1 ? ATOM 18 N N3 . A A 1 1 ? 3.55392 17.73544 18.95228 1.000 8.07920 ? 1 A A N3 1 ? ATOM 19 C C4 . A A 1 1 ? 3.56615 16.41756 18.67883 1.000 7.19216 ? 1 A A C4 1 ? ATOM 20 P P . G A 1 2 ? 0.86082 16.77389 13.15792 1.000 10.86994 ? 2 G A P 1 ? ATOM 21 O OP1 . G A 1 2 ? -0.17519 17.00786 12.11912 1.000 16.20702 ? 2 G A OP1 1 ? ATOM 22 O OP2 . G A 1 2 ? 1.94270 15.78579 12.98156 1.000 12.41496 ? 2 G A OP2 1 ? ATOM 23 O "O5'" . G A 1 2 ? 1.57002 18.16118 13.45263 1.000 11.07640 ? 2 G A "O5'" 1 ? ATOM 24 C "C5'" . G A 1 2 ? 0.82932 19.34148 13.68996 1.000 9.81457 ? 2 G A "C5'" 1 ? ATOM 25 C "C4'" . G A 1 2 ? 1.72747 20.44905 14.17021 1.000 9.32530 ? 2 G A "C4'" 1 ? ATOM 26 O "O4'" . G A 1 2 ? 2.19993 20.15004 15.50838 1.000 10.39884 ? 2 G A "O4'" 1 ? ATOM 27 C "C3'" . G A 1 2 ? 3.00823 20.67729 13.38401 1.000 9.97864 ? 2 G A "C3'" 1 ? ATOM 28 O "O3'" . G A 1 2 ? 2.81761 21.39604 12.18164 1.000 10.60924 ? 2 G A "O3'" 1 ? ATOM 29 C "C2'" . G A 1 2 ? 3.87600 21.39725 14.40244 1.000 8.78513 ? 2 G A "C2'" 1 ? ATOM 30 O "O2'" . G A 1 2 ? 3.43916 22.74194 14.58538 1.000 9.74613 ? 2 G A "O2'" 1 ? ATOM 31 C "C1'" . G A 1 2 ? 3.52823 20.61518 15.65815 1.000 9.51644 ? 2 G A "C1'" 1 ? ATOM 32 N N9 . G A 1 2 ? 4.40200 19.44464 15.81063 1.000 9.20550 ? 2 G A N9 1 ? ATOM 33 C C8 . G A 1 2 ? 4.11162 18.13816 15.50345 1.000 9.00376 ? 2 G A C8 1 ? ATOM 34 N N7 . G A 1 2 ? 5.09899 17.32596 15.74492 1.000 7.20665 ? 2 G A N7 1 ? ATOM 35 C C5 . G A 1 2 ? 6.09308 18.14886 16.25946 1.000 6.94990 ? 2 G A C5 1 ? ATOM 36 C C6 . G A 1 2 ? 7.39049 17.81886 16.70640 1.000 5.62216 ? 2 G A C6 1 ? ATOM 37 O O6 . G A 1 2 ? 7.91373 16.70666 16.74899 1.000 7.62113 ? 2 G A O6 1 ? ATOM 38 N N1 . G A 1 2 ? 8.09217 18.95086 17.12438 1.000 6.71142 ? 2 G A N1 1 ? ATOM 39 C C2 . G A 1 2 ? 7.59230 20.23480 17.11458 1.000 7.36282 ? 2 G A C2 1 ? ATOM 40 N N2 . G A 1 2 ? 8.43627 21.17949 17.56235 1.000 7.62870 ? 2 G A N2 1 ? ATOM 41 N N3 . G A 1 2 ? 6.36827 20.55711 16.71520 1.000 7.33988 ? 2 G A N3 1 ? ATOM 42 C C4 . G A 1 2 ? 5.68809 19.46169 16.29340 1.000 6.55064 ? 2 G A C4 1 ? ATOM 43 P P . A A 1 3 ? 3.72020 21.07696 10.89239 1.000 9.89945 ? 3 A A P 1 ? ATOM 44 O OP1 . A A 1 3 ? 3.18852 21.92971 9.80149 1.000 15.24259 ? 3 A A OP1 1 ? ATOM 45 O OP2 . A A 1 3 ? 3.85663 19.61848 10.69256 1.000 12.31404 ? 3 A A OP2 1 ? ATOM 46 O "O5'" . A A 1 3 ? 5.15984 21.63074 11.27061 1.000 8.47598 ? 3 A A "O5'" 1 ? ATOM 47 C "C5'" . A A 1 3 ? 5.32928 22.98125 11.65438 1.000 9.45647 ? 3 A A "C5'" 1 ? ATOM 48 C "C4'" . A A 1 3 ? 6.67030 23.18089 12.30383 1.000 10.21222 ? 3 A A "C4'" 1 ? ATOM 49 O "O4'" . A A 1 3 ? 6.77700 22.36486 13.49523 1.000 9.01269 ? 3 A A "O4'" 1 ? ATOM 50 C "C3'" . A A 1 3 ? 7.86629 22.76478 11.47736 1.000 9.67320 ? 3 A A "C3'" 1 ? ATOM 51 O "O3'" . A A 1 3 ? 8.20456 23.73022 10.51409 1.000 8.65590 ? 3 A A "O3'" 1 ? ATOM 52 C "C2'" . A A 1 3 ? 8.93517 22.56903 12.53568 1.000 8.46509 ? 3 A A "C2'" 1 ? ATOM 53 O "O2'" . A A 1 3 ? 9.40520 23.83083 12.99368 1.000 9.63275 ? 3 A A "O2'" 1 ? ATOM 54 C "C1'" . A A 1 3 ? 8.11323 21.92641 13.64953 1.000 7.86853 ? 3 A A "C1'" 1 ? ATOM 55 N N9 . A A 1 3 ? 8.11853 20.45249 13.58227 1.000 7.70049 ? 3 A A N9 1 ? ATOM 56 C C8 . A A 1 3 ? 7.14751 19.60680 13.09788 1.000 6.79506 ? 3 A A C8 1 ? ATOM 57 N N7 . A A 1 3 ? 7.45856 18.34123 13.18747 1.000 7.49205 ? 3 A A N7 1 ? ATOM 58 C C5 . A A 1 3 ? 8.71518 18.35229 13.77994 1.000 5.56274 ? 3 A A C5 1 ? ATOM 59 C C6 . A A 1 3 ? 9.60183 17.33076 14.16322 1.000 6.18150 ? 3 A A C6 1 ? ATOM 60 N N6 . A A 1 3 ? 9.34965 16.03094 14.01953 1.000 7.23288 ? 3 A A N6 1 ? ATOM 61 N N1 . A A 1 3 ? 10.77563 17.69760 14.73023 1.000 5.43116 ? 3 A A N1 1 ? ATOM 62 C C2 . A A 1 3 ? 11.04628 19.00276 14.89071 1.000 5.69590 ? 3 A A C2 1 ? ATOM 63 N N3 . A A 1 3 ? 10.28931 20.05245 14.57616 1.000 6.55533 ? 3 A A N3 1 ? ATOM 64 C C4 . A A 1 3 ? 9.13388 19.64505 14.01396 1.000 5.84301 ? 3 A A C4 1 ? ATOM 65 P P . G A 1 4 ? 8.99298 23.29020 9.19755 1.000 10.78163 ? 4 G A P 1 ? ATOM 66 O OP1 . G A 1 4 ? 8.91063 24.46370 8.28622 1.000 13.68638 ? 4 G A OP1 1 ? ATOM 67 O OP2 . G A 1 4 ? 8.52071 21.97495 8.70693 1.000 11.36624 ? 4 G A OP2 1 ? ATOM 68 O "O5'" . G A 1 4 ? 10.49281 23.06926 9.67537 1.000 9.20873 ? 4 G A "O5'" 1 ? ATOM 69 C "C5'" . G A 1 4 ? 11.29316 24.13687 10.15263 1.000 8.49949 ? 4 G A "C5'" 1 ? ATOM 70 C "C4'" . G A 1 4 ? 12.65650 23.64048 10.54661 1.000 7.92446 ? 4 G A "C4'" 1 ? ATOM 71 O "O4'" . G A 1 4 ? 12.55515 22.79635 11.72547 1.000 9.18574 ? 4 G A "O4'" 1 ? ATOM 72 C "C3'" . G A 1 4 ? 13.34628 22.75042 9.53047 1.000 10.51207 ? 4 G A "C3'" 1 ? ATOM 73 O "O3'" . G A 1 4 ? 13.93606 23.46662 8.46311 1.000 12.39387 ? 4 G A "O3'" 1 ? ATOM 74 C "C2'" . G A 1 4 ? 14.33991 21.99179 10.39356 1.000 10.26560 ? 4 G A "C2'" 1 ? ATOM 75 O "O2'" . G A 1 4 ? 15.41973 22.83395 10.76080 1.000 12.86355 ? 4 G A "O2'" 1 ? ATOM 76 C "C1'" . G A 1 4 ? 13.50035 21.74693 11.64195 1.000 10.31138 ? 4 G A "C1'" 1 ? ATOM 77 N N9 . G A 1 4 ? 12.76397 20.47428 11.56693 1.000 7.15344 ? 4 G A N9 1 ? ATOM 78 C C8 . G A 1 4 ? 11.45640 20.31639 11.18759 1.000 6.09183 ? 4 G A C8 1 ? ATOM 79 N N7 . G A 1 4 ? 11.05697 19.08356 11.21609 1.000 8.00360 ? 4 G A N7 1 ? ATOM 80 C C5 . G A 1 4 ? 12.17166 18.37538 11.63894 1.000 6.51601 ? 4 G A C5 1 ? ATOM 81 C C6 . G A 1 4 ? 12.34043 16.98694 11.85821 1.000 7.23214 ? 4 G A C6 1 ? ATOM 82 O O6 . G A 1 4 ? 11.50252 16.07812 11.71573 1.000 8.02146 ? 4 G A O6 1 ? ATOM 83 N N1 . G A 1 4 ? 13.63032 16.69069 12.28029 1.000 6.44159 ? 4 G A N1 1 ? ATOM 84 C C2 . G A 1 4 ? 14.63687 17.61090 12.46706 1.000 7.09308 ? 4 G A C2 1 ? ATOM 85 N N2 . G A 1 4 ? 15.82670 17.13857 12.87004 1.000 8.32134 ? 4 G A N2 1 ? ATOM 86 N N3 . G A 1 4 ? 14.48397 18.91638 12.26857 1.000 9.35382 ? 4 G A N3 1 ? ATOM 87 C C4 . G A 1 4 ? 13.23963 19.21780 11.85824 1.000 8.10822 ? 4 G A C4 1 ? ATOM 88 P P . A A 1 5 ? 13.97879 22.81028 7.00065 1.000 13.34329 ? 5 A A P 1 ? ATOM 89 O OP1 . A A 1 5 ? 14.58046 23.82247 6.09128 1.000 17.76512 ? 5 A A OP1 1 ? ATOM 90 O OP2 . A A 1 5 ? 12.67198 22.22995 6.64564 1.000 13.75366 ? 5 A A OP2 1 ? ATOM 91 O "O5'" . A A 1 5 ? 14.95525 21.56526 7.17743 1.000 14.61508 ? 5 A A "O5'" 1 ? ATOM 92 C "C5'" . A A 1 5 ? 16.33747 21.75500 7.42545 1.000 13.45445 ? 5 A A "C5'" 1 ? ATOM 93 C "C4'" . A A 1 5 ? 17.05239 20.44539 7.65501 1.000 13.14430 ? 5 A A "C4'" 1 ? ATOM 94 O "O4'" . A A 1 5 ? 16.54898 19.79918 8.85311 1.000 11.31917 ? 5 A A "O4'" 1 ? ATOM 95 C "C3'" . A A 1 5 ? 16.89100 19.37278 6.59141 1.000 13.88860 ? 5 A A "C3'" 1 ? ATOM 96 O "O3'" . A A 1 5 ? 17.64552 19.60205 5.42329 1.000 15.22504 ? 5 A A "O3'" 1 ? ATOM 97 C "C2'" . A A 1 5 ? 17.29467 18.12017 7.34866 1.000 11.75173 ? 5 A A "C2'" 1 ? ATOM 98 O "O2'" . A A 1 5 ? 18.70394 18.05476 7.51190 1.000 12.56490 ? 5 A A "O2'" 1 ? ATOM 99 C "C1'" . A A 1 5 ? 16.64816 18.39331 8.70814 1.000 12.41238 ? 5 A A "C1'" 1 ? ATOM 100 N N9 . A A 1 5 ? 15.29756 17.80649 8.73379 1.000 11.04148 ? 5 A A N9 1 ? ATOM 101 C C8 . A A 1 5 ? 14.08702 18.38985 8.44774 1.000 10.85766 ? 5 A A C8 1 ? ATOM 102 N N7 . A A 1 5 ? 13.07853 17.54674 8.51489 1.000 9.79185 ? 5 A A N7 1 ? ATOM 103 C C5 . A A 1 5 ? 13.66381 16.33781 8.85775 1.000 10.22795 ? 5 A A C5 1 ? ATOM 104 C C6 . A A 1 5 ? 13.14295 15.04583 9.08145 1.000 9.59583 ? 5 A A C6 1 ? ATOM 105 N N6 . A A 1 5 ? 11.84843 14.73636 9.00166 1.000 10.31235 ? 5 A A N6 1 ? ATOM 106 N N1 . A A 1 5 ? 14.00936 14.05807 9.39553 1.000 10.57598 ? 5 A A N1 1 ? ATOM 107 C C2 . A A 1 5 ? 15.30918 14.34865 9.47939 1.000 10.41935 ? 5 A A C2 1 ? ATOM 108 N N3 . A A 1 5 ? 15.91741 15.51576 9.28760 1.000 11.73205 ? 5 A A N3 1 ? ATOM 109 C C4 . A A 1 5 ? 15.02975 16.47803 8.97720 1.000 10.09101 ? 5 A A C4 1 ? ATOM 110 P P . A A 1 6 ? 17.07529 19.09096 4.01665 1.000 13.83587 ? 6 A A P 1 ? ATOM 111 O OP1 . A A 1 6 ? 17.95385 19.68381 2.97368 1.000 16.80227 ? 6 A A OP1 1 ? ATOM 112 O OP2 . A A 1 6 ? 15.61872 19.35789 3.94772 1.000 16.08414 ? 6 A A OP2 1 ? ATOM 113 O "O5'" . A A 1 6 ? 17.15192 17.48996 4.07157 1.000 15.62548 ? 6 A A "O5'" 1 ? ATOM 114 C "C5'" . A A 1 6 ? 18.38621 16.80178 4.13495 1.000 19.26957 ? 6 A A "C5'" 1 ? ATOM 115 C "C4'" . A A 1 6 ? 18.22705 15.32875 4.44839 1.000 14.50310 ? 6 A A "C4'" 1 ? ATOM 116 O "O4'" . A A 1 6 ? 17.48665 15.12974 5.67817 1.000 12.65174 ? 6 A A "O4'" 1 ? ATOM 117 C "C3'" . A A 1 6 ? 17.48184 14.45555 3.45325 1.000 12.12041 ? 6 A A "C3'" 1 ? ATOM 118 O "O3'" . A A 1 6 ? 18.22832 14.16585 2.28937 1.000 12.41610 ? 6 A A "O3'" 1 ? ATOM 119 C "C2'" . A A 1 6 ? 17.18456 13.22452 4.29603 1.000 15.98214 ? 6 A A "C2'" 1 ? ATOM 120 O "O2'" . A A 1 6 ? 18.36824 12.46887 4.47954 1.000 19.69686 ? 6 A A "O2'" 1 ? ATOM 121 C "C1'" . A A 1 6 ? 16.83182 13.87137 5.63768 1.000 13.01245 ? 6 A A "C1'" 1 ? ATOM 122 N N9 . A A 1 6 ? 15.37513 14.07223 5.77034 1.000 13.22717 ? 6 A A N9 1 ? ATOM 123 C C8 . A A 1 6 ? 14.67239 15.23651 5.61188 1.000 13.55044 ? 6 A A C8 1 ? ATOM 124 N N7 . A A 1 6 ? 13.37304 15.10663 5.77245 1.000 20.08407 ? 6 A A N7 1 ? ATOM 125 C C5 . A A 1 6 ? 13.20051 13.75683 6.05105 1.000 15.41178 ? 6 A A C5 1 ? ATOM 126 C C6 . A A 1 6 ? 12.05330 12.96387 6.32595 1.000 15.05177 ? 6 A A C6 1 ? ATOM 127 N N6 . A A 1 6 ? 10.79878 13.43459 6.36795 1.000 19.00675 ? 6 A A N6 1 ? ATOM 128 N N1 . A A 1 6 ? 12.23661 11.64319 6.56112 1.000 10.67215 ? 6 A A N1 1 ? ATOM 129 C C2 . A A 1 6 ? 13.48610 11.16151 6.51981 1.000 12.37380 ? 6 A A C2 1 ? ATOM 130 N N3 . A A 1 6 ? 14.62766 11.80795 6.27502 1.000 18.68807 ? 6 A A N3 1 ? ATOM 131 C C4 . A A 1 6 ? 14.42224 13.11214 6.05049 1.000 13.68526 ? 6 A A C4 1 ? ATOM 132 P P . G A 1 7 ? 17.46423 13.93349 0.89931 1.000 12.98286 ? 7 G A P 1 ? ATOM 133 O OP1 . G A 1 7 ? 18.50625 13.85965 -0.15543 1.000 15.36446 ? 7 G A OP1 1 ? ATOM 134 O OP2 . G A 1 7 ? 16.34613 14.88618 0.79130 1.000 15.01750 ? 7 G A OP2 1 ? ATOM 135 O "O5'" . G A 1 7 ? 16.83135 12.48330 1.04477 1.000 12.37172 ? 7 G A "O5'" 1 ? ATOM 136 C "C5'" . G A 1 7 ? 17.66583 11.34103 1.00235 1.000 10.04259 ? 7 G A "C5'" 1 ? ATOM 137 C "C4'" . G A 1 7 ? 16.90551 10.09134 1.33898 1.000 12.84636 ? 7 G A "C4'" 1 ? ATOM 138 O "O4'" . G A 1 7 ? 16.27218 10.22116 2.63653 1.000 10.47229 ? 7 G A "O4'" 1 ? ATOM 139 C "C3'" . G A 1 7 ? 15.75153 9.73275 0.42388 1.000 10.18715 ? 7 G A "C3'" 1 ? ATOM 140 O "O3'" . G A 1 7 ? 16.17942 9.18165 -0.80797 1.000 11.15664 ? 7 G A "O3'" 1 ? ATOM 141 C "C2'" . G A 1 7 ? 14.97095 8.76526 1.29719 1.000 10.75188 ? 7 G A "C2'" 1 ? ATOM 142 O "O2'" . G A 1 7 ? 15.66156 7.52977 1.38694 1.000 12.83975 ? 7 G A "O2'" 1 ? ATOM 143 C "C1'" . G A 1 7 ? 15.07740 9.46053 2.64924 1.000 10.18477 ? 7 G A "C1'" 1 ? ATOM 144 N N9 . G A 1 7 ? 13.93940 10.36364 2.87242 1.000 11.19395 ? 7 G A N9 1 ? ATOM 145 C C8 . G A 1 7 ? 13.90093 11.73322 2.79620 1.000 11.47198 ? 7 G A C8 1 ? ATOM 146 N N7 . G A 1 7 ? 12.71087 12.21506 3.04731 1.000 10.99185 ? 7 G A N7 1 ? ATOM 147 C C5 . G A 1 7 ? 11.92694 11.09419 3.30627 1.000 10.48609 ? 7 G A C5 1 ? ATOM 148 C C6 . G A 1 7 ? 10.54612 10.97070 3.65161 1.000 10.22196 ? 7 G A C6 1 ? ATOM 149 O O6 . G A 1 7 ? 9.69231 11.85572 3.80386 1.000 13.66567 ? 7 G A O6 1 ? ATOM 150 N N1 . G A 1 7 ? 10.17621 9.64254 3.81958 1.000 10.33766 ? 7 G A N1 1 ? ATOM 151 C C2 . G A 1 7 ? 11.01667 8.56460 3.67449 1.000 9.54252 ? 7 G A C2 1 ? ATOM 152 N N2 . G A 1 7 ? 10.48177 7.35030 3.87328 1.000 11.92735 ? 7 G A N2 1 ? ATOM 153 N N3 . G A 1 7 ? 12.29818 8.66827 3.36713 1.000 9.57277 ? 7 G A N3 1 ? ATOM 154 C C4 . G A 1 7 ? 12.67818 9.94976 3.20192 1.000 10.34364 ? 7 G A C4 1 ? ATOM 155 P P . A A 1 8 ? 15.23651 9.22689 -2.11087 1.000 12.64476 ? 8 A A P 1 ? ATOM 156 O OP1 . A A 1 8 ? 16.07908 8.71224 -3.22371 1.000 13.69021 ? 8 A A OP1 1 ? ATOM 157 O OP2 . A A 1 8 ? 14.57542 10.53770 -2.23227 1.000 14.84224 ? 8 A A OP2 1 ? ATOM 158 O "O5'" . A A 1 8 ? 14.11874 8.14069 -1.82143 1.000 13.20000 ? 8 A A "O5'" 1 ? ATOM 159 C "C5'" . A A 1 8 ? 14.46761 6.78429 -1.61568 1.000 14.54411 ? 8 A A "C5'" 1 ? ATOM 160 C "C4'" . A A 1 8 ? 13.26895 5.99299 -1.18713 1.000 11.49742 ? 8 A A "C4'" 1 ? ATOM 161 O "O4'" . A A 1 8 ? 12.75894 6.51059 0.06783 1.000 13.17135 ? 8 A A "O4'" 1 ? ATOM 162 C "C3'" . A A 1 8 ? 12.07212 6.06370 -2.11774 1.000 14.22514 ? 8 A A "C3'" 1 ? ATOM 163 O "O3'" . A A 1 8 ? 12.21103 5.21278 -3.23699 1.000 16.99315 ? 8 A A "O3'" 1 ? ATOM 164 C "C2'" . A A 1 8 ? 10.92526 5.69162 -1.19259 1.000 14.63245 ? 8 A A "C2'" 1 ? ATOM 165 O "O2'" . A A 1 8 ? 10.92854 4.29319 -0.93950 1.000 17.71941 ? 8 A A "O2'" 1 ? ATOM 166 C "C1'" . A A 1 8 ? 11.34995 6.40182 0.09021 1.000 16.29190 ? 8 A A "C1'" 1 ? ATOM 167 N N9 . A A 1 8 ? 10.79483 7.76332 0.19415 1.000 11.97467 ? 8 A A N9 1 ? ATOM 168 C C8 . A A 1 8 ? 11.44256 8.94945 -0.04715 1.000 11.03813 ? 8 A A C8 1 ? ATOM 169 N N7 . A A 1 8 ? 10.69872 10.00962 0.14972 1.000 11.79836 ? 8 A A N7 1 ? ATOM 170 C C5 . A A 1 8 ? 9.47917 9.47841 0.55570 1.000 9.70340 ? 8 A A C5 1 ? ATOM 171 C C6 . A A 1 8 ? 8.25724 10.07632 0.91797 1.000 9.34436 ? 8 A A C6 1 ? ATOM 172 N N6 . A A 1 8 ? 8.06081 11.39085 0.94215 1.000 12.94584 ? 8 A A N6 1 ? ATOM 173 N N1 . A A 1 8 ? 7.24356 9.26674 1.26579 1.000 11.86029 ? 8 A A N1 1 ? ATOM 174 C C2 . A A 1 8 ? 7.44156 7.94758 1.24375 1.000 12.75125 ? 8 A A C2 1 ? ATOM 175 N N3 . A A 1 8 ? 8.53333 7.25779 0.92884 1.000 11.86428 ? 8 A A N3 1 ? ATOM 176 C C4 . A A 1 8 ? 9.52575 8.09717 0.58344 1.000 11.87823 ? 8 A A C4 1 ? ATOM 177 P P . U A 1 9 ? 11.64717 5.66320 -4.66731 1.000 16.55884 ? 9 U A P 1 ? ATOM 178 O OP1 . U A 1 9 ? 12.20904 4.70902 -5.66159 1.000 19.91255 ? 9 U A OP1 1 ? ATOM 179 O OP2 . U A 1 9 ? 11.83536 7.11700 -4.87363 1.000 16.96557 ? 9 U A OP2 1 ? ATOM 180 O "O5'" . U A 1 9 ? 10.09421 5.39090 -4.53243 1.000 16.54166 ? 9 U A "O5'" 1 ? ATOM 181 C "C5'" . U A 1 9 ? 9.61581 4.10215 -4.19957 1.000 16.20245 ? 9 U A "C5'" 1 ? ATOM 182 C "C4'" . U A 1 9 ? 8.19244 4.16066 -3.72120 1.000 17.34265 ? 9 U A "C4'" 1 ? ATOM 183 O "O4'" . U A 1 9 ? 8.11245 4.89556 -2.46713 1.000 16.79657 ? 9 U A "O4'" 1 ? ATOM 184 C "C3'" . U A 1 9 ? 7.21369 4.89182 -4.62192 1.000 16.88205 ? 9 U A "C3'" 1 ? ATOM 185 O "O3'" . U A 1 9 ? 6.80690 4.13533 -5.74872 1.000 17.65521 ? 9 U A "O3'" 1 ? ATOM 186 C "C2'" . U A 1 9 ? 6.09127 5.22434 -3.65281 1.000 16.34058 ? 9 U A "C2'" 1 ? ATOM 187 O "O2'" . U A 1 9 ? 5.34040 4.05798 -3.34594 1.000 19.63149 ? 9 U A "O2'" 1 ? ATOM 188 C "C1'" . U A 1 9 ? 6.89180 5.60596 -2.40917 1.000 17.92080 ? 9 U A "C1'" 1 ? ATOM 189 N N1 . U A 1 9 ? 7.19118 7.05706 -2.38185 1.000 14.79209 ? 9 U A N1 1 ? ATOM 190 C C2 . U A 1 9 ? 6.20016 7.91017 -1.92782 1.000 11.74327 ? 9 U A C2 1 ? ATOM 191 O O2 . U A 1 9 ? 5.11564 7.51855 -1.55035 1.000 15.58724 ? 9 U A O2 1 ? ATOM 192 N N3 . U A 1 9 ? 6.53733 9.23958 -1.92929 1.000 13.11874 ? 9 U A N3 1 ? ATOM 193 C C4 . U A 1 9 ? 7.72953 9.79248 -2.33649 1.000 13.86094 ? 9 U A C4 1 ? ATOM 194 O O4 . U A 1 9 ? 7.87969 11.01542 -2.27660 1.000 14.29865 ? 9 U A O4 1 ? ATOM 195 C C5 . U A 1 9 ? 8.70566 8.85135 -2.79921 1.000 12.55965 ? 9 U A C5 1 ? ATOM 196 C C6 . U A 1 9 ? 8.40846 7.54995 -2.80085 1.000 12.02314 ? 9 U A C6 1 ? ATOM 197 P P . C A 1 10 ? 6.49426 4.86340 -7.14705 1.000 18.73884 ? 10 C A P 1 ? ATOM 198 O OP1 . C A 1 10 ? 6.31908 3.79234 -8.16122 1.000 22.55545 ? 10 C A OP1 1 ? ATOM 199 O OP2 . C A 1 10 ? 7.46952 5.95484 -7.39272 1.000 18.87639 ? 10 C A OP2 1 ? ATOM 200 O "O5'" . C A 1 10 ? 5.07425 5.54461 -6.90771 1.000 16.30716 ? 10 C A "O5'" 1 ? ATOM 201 C "C5'" . C A 1 10 ? 3.95031 4.77368 -6.51489 1.000 16.12523 ? 10 C A "C5'" 1 ? ATOM 202 C "C4'" . C A 1 10 ? 2.80923 5.65090 -6.06602 1.000 14.25973 ? 10 C A "C4'" 1 ? ATOM 203 O "O4'" . C A 1 10 ? 3.18067 6.37572 -4.86214 1.000 14.55149 ? 10 C A "O4'" 1 ? ATOM 204 C "C3'" . C A 1 10 ? 2.37654 6.74915 -7.02631 1.000 16.35773 ? 10 C A "C3'" 1 ? ATOM 205 O "O3'" . C A 1 10 ? 1.56810 6.27903 -8.09102 1.000 15.07556 ? 10 C A "O3'" 1 ? ATOM 206 C "C2'" . C A 1 10 ? 1.66589 7.71621 -6.09674 1.000 14.07671 ? 10 C A "C2'" 1 ? ATOM 207 O "O2'" . C A 1 10 ? 0.39577 7.20383 -5.72896 1.000 17.49878 ? 10 C A "O2'" 1 ? ATOM 208 C "C1'" . C A 1 10 ? 2.56738 7.64901 -4.86813 1.000 14.66059 ? 10 C A "C1'" 1 ? ATOM 209 N N1 . C A 1 10 ? 3.61963 8.68787 -4.90805 1.000 11.82765 ? 10 C A N1 1 ? ATOM 210 C C2 . C A 1 10 ? 3.24018 9.97900 -4.54185 1.000 12.35156 ? 10 C A C2 1 ? ATOM 211 O O2 . C A 1 10 ? 2.06784 10.18618 -4.21200 1.000 12.35759 ? 10 C A O2 1 ? ATOM 212 N N3 . C A 1 10 ? 4.15790 10.96200 -4.54893 1.000 11.10990 ? 10 C A N3 1 ? ATOM 213 C C4 . C A 1 10 ? 5.40952 10.70273 -4.90711 1.000 12.01357 ? 10 C A C4 1 ? ATOM 214 N N4 . C A 1 10 ? 6.26049 11.72519 -4.89014 1.000 10.09330 ? 10 C A N4 1 ? ATOM 215 C C5 . C A 1 10 ? 5.83383 9.39262 -5.29406 1.000 11.92050 ? 10 C A C5 1 ? ATOM 216 C C6 . C A 1 10 ? 4.91303 8.41966 -5.28241 1.000 12.92804 ? 10 C A C6 1 ? ATOM 217 P P . U A 1 11 ? 1.73534 6.89264 -9.56537 1.000 17.77232 ? 11 U A P 1 ? ATOM 218 O OP1 . U A 1 11 ? 0.78407 6.15193 -10.43227 1.000 26.05515 ? 11 U A OP1 1 ? ATOM 219 O OP2 . U A 1 11 ? 3.15372 6.99201 -9.96890 1.000 18.09845 ? 11 U A OP2 1 ? ATOM 220 O "O5'" . U A 1 11 ? 1.20368 8.38119 -9.41349 1.000 14.73407 ? 11 U A "O5'" 1 ? ATOM 221 C "C5'" . U A 1 11 ? -0.14919 8.61335 -9.09549 1.000 13.80211 ? 11 U A "C5'" 1 ? ATOM 222 C "C4'" . U A 1 11 ? -0.37720 10.01988 -8.62173 1.000 13.65349 ? 11 U A "C4'" 1 ? ATOM 223 O "O4'" . U A 1 11 ? 0.49091 10.33948 -7.50539 1.000 11.92537 ? 11 U A "O4'" 1 ? ATOM 224 C "C3'" . U A 1 11 ? -0.10113 11.14504 -9.59885 1.000 15.40564 ? 11 U A "C3'" 1 ? ATOM 225 O "O3'" . U A 1 11 ? -1.08102 11.25699 -10.61284 1.000 12.71100 ? 11 U A "O3'" 1 ? ATOM 226 C "C2'" . U A 1 11 ? -0.05453 12.34200 -8.66056 1.000 14.61941 ? 11 U A "C2'" 1 ? ATOM 227 O "O2'" . U A 1 11 ? -1.36597 12.68673 -8.24185 1.000 20.88237 ? 11 U A "O2'" 1 ? ATOM 228 C "C1'" . U A 1 11 ? 0.67646 11.73809 -7.45883 1.000 13.10091 ? 11 U A "C1'" 1 ? ATOM 229 N N1 . U A 1 11 ? 2.11135 12.04387 -7.51169 1.000 16.81790 ? 11 U A N1 1 ? ATOM 230 C C2 . U A 1 11 ? 2.42039 13.32588 -7.10391 1.000 14.75123 ? 11 U A C2 1 ? ATOM 231 O O2 . U A 1 11 ? 1.58343 14.12339 -6.72035 1.000 19.45090 ? 11 U A O2 1 ? ATOM 232 N N3 . U A 1 11 ? 3.73323 13.63018 -7.15746 1.000 13.67900 ? 11 U A N3 1 ? ATOM 233 C C4 . U A 1 11 ? 4.75578 12.80641 -7.58212 1.000 14.75963 ? 11 U A C4 1 ? ATOM 234 O O4 . U A 1 11 ? 5.90526 13.24829 -7.56589 1.000 22.58002 ? 11 U A O4 1 ? ATOM 235 C C5 . U A 1 11 ? 4.35412 11.49883 -7.99949 1.000 21.16332 ? 11 U A C5 1 ? ATOM 236 C C6 . U A 1 11 ? 3.06265 11.16613 -7.95515 1.000 13.77764 ? 11 U A C6 1 ? HETATM 237 P P . SUR A 1 12 ? -0.72399 11.92997 -12.02828 1.000 13.50800 ? 12 SUR A P 1 ? HETATM 238 O OP1 . SUR A 1 12 ? -1.80741 11.50162 -12.98532 1.000 14.91695 ? 12 SUR A OP1 1 ? HETATM 239 O OP2 . SUR A 1 12 ? 0.72622 11.70821 -12.36595 1.000 14.60534 ? 12 SUR A OP2 1 ? HETATM 240 O "O5'" . SUR A 1 12 ? -0.89709 13.48335 -11.76942 1.000 10.72124 ? 12 SUR A "O5'" 1 ? HETATM 241 C "C5'" . SUR A 1 12 ? -2.14849 14.02436 -11.39474 1.000 10.02274 ? 12 SUR A "C5'" 1 ? HETATM 242 C "C4'" . SUR A 1 12 ? -2.03553 15.51328 -11.24537 1.000 10.53434 ? 12 SUR A "C4'" 1 ? HETATM 243 O "O4'" . SUR A 1 12 ? -1.22496 15.81650 -10.08214 1.000 11.10526 ? 12 SUR A "O4'" 1 ? HETATM 244 C "C3'" . SUR A 1 12 ? -1.31210 16.22938 -12.36879 1.000 11.42324 ? 12 SUR A "C3'" 1 ? HETATM 245 C "C1'" . SUR A 1 12 ? -0.48729 16.99513 -10.31638 1.000 11.79597 ? 12 SUR A "C1'" 1 ? HETATM 246 N N1 . SUR A 1 12 ? 0.94117 16.65412 -10.21534 1.000 9.90843 ? 12 SUR A N1 1 ? HETATM 247 C "C2'" . SUR A 1 12 ? -0.87690 17.51385 -11.69365 1.000 11.49322 ? 12 SUR A "C2'" 1 ? HETATM 248 C C6 . SUR A 1 12 ? 1.33953 15.27712 -10.32573 1.000 12.30664 ? 12 SUR A C6 1 ? HETATM 249 C C2 . SUR A 1 12 ? 1.93812 17.72301 -9.94742 1.000 11.85700 ? 12 SUR A C2 1 ? HETATM 250 C C5 . SUR A 1 12 ? 2.75839 14.91850 -10.19183 1.000 11.41530 ? 12 SUR A C5 1 ? HETATM 251 S S2 . SUR A 1 12 ? 1.50490 19.25895 -9.81832 1.000 12.60418 ? 12 SUR A S2 1 ? HETATM 252 N N3 . SUR A 1 12 ? 3.36651 17.35974 -9.80540 1.000 9.73503 ? 12 SUR A N3 1 ? HETATM 253 C C4 . SUR A 1 12 ? 3.76764 15.96852 -9.92127 1.000 11.71396 ? 12 SUR A C4 1 ? HETATM 254 O O4 . SUR A 1 12 ? 4.90817 15.67912 -9.81244 1.000 11.61641 ? 12 SUR A O4 1 ? HETATM 255 O "O2'" . SUR A 1 12 ? -1.99489 18.36388 -11.51204 1.000 11.12801 ? 12 SUR A "O2'" 1 ? HETATM 256 O "O3'" . SUR A 1 12 ? -2.12410 16.44172 -13.50423 1.000 8.99510 ? 12 SUR A "O3'" 1 ? ATOM 257 P P . C A 1 13 ? -1.47272 16.43685 -14.96184 1.000 10.71770 ? 13 C A P 1 ? ATOM 258 O OP1 . C A 1 13 ? -2.60964 16.54369 -15.92120 1.000 13.62062 ? 13 C A OP1 1 ? ATOM 259 O OP2 . C A 1 13 ? -0.50847 15.31424 -15.06965 1.000 11.53576 ? 13 C A OP2 1 ? ATOM 260 O "O5'" . C A 1 13 ? -0.60104 17.76969 -15.01223 1.000 10.48301 ? 13 C A "O5'" 1 ? ATOM 261 C "C5'" . C A 1 13 ? -1.22478 19.03651 -15.03275 1.000 10.06669 ? 13 C A "C5'" 1 ? ATOM 262 C "C4'" . C A 1 13 ? -0.23259 20.15217 -14.83910 1.000 10.44516 ? 13 C A "C4'" 1 ? ATOM 263 O "O4'" . C A 1 13 ? 0.44935 20.00608 -13.56865 1.000 10.38355 ? 13 C A "O4'" 1 ? ATOM 264 C "C3'" . C A 1 13 ? 0.91069 20.26509 -15.83620 1.000 9.29422 ? 13 C A "C3'" 1 ? ATOM 265 O "O3'" . C A 1 13 ? 0.52227 20.82105 -17.07745 1.000 9.06954 ? 13 C A "O3'" 1 ? ATOM 266 C "C2'" . C A 1 13 ? 1.88314 21.14802 -15.07102 1.000 6.81699 ? 13 C A "C2'" 1 ? ATOM 267 O "O2'" . C A 1 13 ? 1.41570 22.49035 -15.03537 1.000 10.06780 ? 13 C A "O2'" 1 ? ATOM 268 C "C1'" . C A 1 13 ? 1.73701 20.58041 -13.66248 1.000 9.47990 ? 13 C A "C1'" 1 ? ATOM 269 N N1 . C A 1 13 ? 2.75420 19.54478 -13.39358 1.000 7.74523 ? 13 C A N1 1 ? ATOM 270 C C2 . C A 1 13 ? 4.03330 19.99860 -13.06001 1.000 7.18794 ? 13 C A C2 1 ? ATOM 271 O O2 . C A 1 13 ? 4.23072 21.22428 -13.00780 1.000 8.86179 ? 13 C A O2 1 ? ATOM 272 N N3 . C A 1 13 ? 5.00256 19.09446 -12.80400 1.000 8.00696 ? 13 C A N3 1 ? ATOM 273 C C4 . C A 1 13 ? 4.73582 17.78926 -12.86921 1.000 9.87717 ? 13 C A C4 1 ? ATOM 274 N N4 . C A 1 13 ? 5.73576 16.93879 -12.60498 1.000 9.63573 ? 13 C A N4 1 ? ATOM 275 C C5 . C A 1 13 ? 3.43826 17.29950 -13.22566 1.000 7.65518 ? 13 C A C5 1 ? ATOM 276 C C6 . C A 1 13 ? 2.48155 18.20514 -13.47133 1.000 9.71748 ? 13 C A C6 1 ? ATOM 277 P P . U A 1 14 ? 1.24140 20.37984 -18.44500 1.000 9.03735 ? 14 U A P 1 ? ATOM 278 O OP1 . U A 1 14 ? 0.47078 21.01602 -19.54721 1.000 11.58851 ? 14 U A OP1 1 ? ATOM 279 O OP2 . U A 1 14 ? 1.45358 18.91528 -18.43258 1.000 11.29244 ? 14 U A OP2 1 ? ATOM 280 O "O5'" . U A 1 14 ? 2.68315 21.04573 -18.39739 1.000 8.42428 ? 14 U A "O5'" 1 ? ATOM 281 C "C5'" . U A 1 14 ? 2.81119 22.45225 -18.48924 1.000 7.89864 ? 14 U A "C5'" 1 ? ATOM 282 C "C4'" . U A 1 14 ? 4.18671 22.90971 -18.08543 1.000 8.28604 ? 14 U A "C4'" 1 ? ATOM 283 O "O4'" . U A 1 14 ? 4.51187 22.41686 -16.76260 1.000 8.05101 ? 14 U A "O4'" 1 ? ATOM 284 C "C3'" . U A 1 14 ? 5.34597 22.42964 -18.94111 1.000 7.02364 ? 14 U A "C3'" 1 ? ATOM 285 O "O3'" . U A 1 14 ? 5.47182 23.17848 -20.12872 1.000 7.74535 ? 14 U A "O3'" 1 ? ATOM 286 C "C2'" . U A 1 14 ? 6.51759 22.61143 -17.99718 1.000 6.62637 ? 14 U A "C2'" 1 ? ATOM 287 O "O2'" . U A 1 14 ? 6.80888 23.99205 -17.86752 1.000 8.74800 ? 14 U A "O2'" 1 ? ATOM 288 C "C1'" . U A 1 14 ? 5.89819 22.15751 -16.68273 1.000 7.78964 ? 14 U A "C1'" 1 ? ATOM 289 N N1 . U A 1 14 ? 6.08870 20.71282 -16.42268 1.000 6.27499 ? 14 U A N1 1 ? ATOM 290 C C2 . U A 1 14 ? 7.31957 20.31541 -15.93914 1.000 5.64238 ? 14 U A C2 1 ? ATOM 291 O O2 . U A 1 14 ? 8.22293 21.10023 -15.77072 1.000 6.11654 ? 14 U A O2 1 ? ATOM 292 N N3 . U A 1 14 ? 7.44770 18.98217 -15.67259 1.000 7.56067 ? 14 U A N3 1 ? ATOM 293 C C4 . U A 1 14 ? 6.47063 18.02516 -15.83983 1.000 6.88578 ? 14 U A C4 1 ? ATOM 294 O O4 . U A 1 14 ? 6.71779 16.84857 -15.57148 1.000 8.68455 ? 14 U A O4 1 ? ATOM 295 C C5 . U A 1 14 ? 5.21730 18.51223 -16.34122 1.000 6.46001 ? 14 U A C5 1 ? ATOM 296 C C6 . U A 1 14 ? 5.07024 19.81192 -16.60486 1.000 6.08962 ? 14 U A C6 1 ? ATOM 297 P P . C A 1 15 ? 6.19335 22.57475 -21.42206 1.000 8.84252 ? 15 C A P 1 ? ATOM 298 O OP1 . C A 1 15 ? 5.88719 23.52759 -22.52949 1.000 10.34890 ? 15 C A OP1 1 ? ATOM 299 O OP2 . C A 1 15 ? 5.85146 21.13621 -21.56064 1.000 11.25474 ? 15 C A OP2 1 ? ATOM 300 O "O5'" . C A 1 15 ? 7.74842 22.63825 -21.09842 1.000 8.84461 ? 15 C A "O5'" 1 ? ATOM 301 C "C5'" . C A 1 15 ? 8.41670 23.87355 -20.90709 1.000 7.29120 ? 15 C A "C5'" 1 ? ATOM 302 C "C4'" . C A 1 15 ? 9.81789 23.65294 -20.40145 1.000 7.68982 ? 15 C A "C4'" 1 ? ATOM 303 O "O4'" . C A 1 15 ? 9.77723 22.97926 -19.11919 1.000 9.23794 ? 15 C A "O4'" 1 ? ATOM 304 C "C3'" . C A 1 15 ? 10.69227 22.75275 -21.25245 1.000 8.55978 ? 15 C A "C3'" 1 ? ATOM 305 O "O3'" . C A 1 15 ? 11.23540 23.42591 -22.36563 1.000 8.82404 ? 15 C A "O3'" 1 ? ATOM 306 C "C2'" . C A 1 15 ? 11.73217 22.27680 -20.25548 1.000 8.09852 ? 15 C A "C2'" 1 ? ATOM 307 O "O2'" . C A 1 15 ? 12.66501 23.31771 -19.97280 1.000 9.96314 ? 15 C A "O2'" 1 ? ATOM 308 C "C1'" . C A 1 15 ? 10.86820 22.08913 -19.01599 1.000 7.83703 ? 15 C A "C1'" 1 ? ATOM 309 N N1 . C A 1 15 ? 10.32124 20.72280 -18.87045 1.000 6.12284 ? 15 C A N1 1 ? ATOM 310 C C2 . C A 1 15 ? 11.13828 19.72317 -18.35453 1.000 6.60933 ? 15 C A C2 1 ? ATOM 311 O O2 . C A 1 15 ? 12.32356 20.00687 -18.10818 1.000 6.97409 ? 15 C A O2 1 ? ATOM 312 N N3 . C A 1 15 ? 10.61083 18.48837 -18.15802 1.000 5.94893 ? 15 C A N3 1 ? ATOM 313 C C4 . C A 1 15 ? 9.33263 18.23305 -18.45450 1.000 7.39642 ? 15 C A C4 1 ? ATOM 314 N N4 . C A 1 15 ? 8.84095 17.00571 -18.25488 1.000 7.15298 ? 15 C A N4 1 ? ATOM 315 C C5 . C A 1 15 ? 8.47912 19.24109 -18.97444 1.000 6.56836 ? 15 C A C5 1 ? ATOM 316 C C6 . C A 1 15 ? 9.00647 20.45529 -19.15040 1.000 8.00038 ? 15 C A C6 1 ? ATOM 317 P P . U A 1 16 ? 11.43160 22.64881 -23.75167 1.000 9.41194 ? 16 U A P 1 ? ATOM 318 O OP1 . U A 1 16 ? 11.94276 23.69152 -24.68716 1.000 11.76006 ? 16 U A OP1 1 ? ATOM 319 O OP2 . U A 1 16 ? 10.21885 21.87560 -24.09301 1.000 11.11050 ? 16 U A OP2 1 ? ATOM 320 O "O5'" . U A 1 16 ? 12.58083 21.57833 -23.47134 1.000 8.59078 ? 16 U A "O5'" 1 ? ATOM 321 C "C5'" . U A 1 16 ? 13.90828 22.01235 -23.19769 1.000 9.21658 ? 16 U A "C5'" 1 ? ATOM 322 C "C4'" . U A 1 16 ? 14.78303 20.88331 -22.71578 1.000 7.95987 ? 16 U A "C4'" 1 ? ATOM 323 O "O4'" . U A 1 16 ? 14.28234 20.35528 -21.45865 1.000 6.48359 ? 16 U A "O4'" 1 ? ATOM 324 C "C3'" . U A 1 16 ? 14.85762 19.66717 -23.62070 1.000 7.64971 ? 16 U A "C3'" 1 ? ATOM 325 O "O3'" . U A 1 16 ? 15.74916 19.84282 -24.70612 1.000 9.99295 ? 16 U A "O3'" 1 ? ATOM 326 C "C2'" . U A 1 16 ? 15.28665 18.57168 -22.66074 1.000 7.26994 ? 16 U A "C2'" 1 ? ATOM 327 O "O2'" . U A 1 16 ? 16.68432 18.67030 -22.39402 1.000 8.68841 ? 16 U A "O2'" 1 ? ATOM 328 C "C1'" . U A 1 16 ? 14.52029 18.96353 -21.39918 1.000 7.95168 ? 16 U A "C1'" 1 ? ATOM 329 N N1 . U A 1 16 ? 13.22052 18.25836 -21.30540 1.000 5.80538 ? 16 U A N1 1 ? ATOM 330 C C2 . U A 1 16 ? 13.25417 16.97981 -20.78504 1.000 6.81040 ? 16 U A C2 1 ? ATOM 331 O O2 . U A 1 16 ? 14.29756 16.45911 -20.43036 1.000 8.23164 ? 16 U A O2 1 ? ATOM 332 N N3 . U A 1 16 ? 12.03133 16.35546 -20.70628 1.000 6.38119 ? 16 U A N3 1 ? ATOM 333 C C4 . U A 1 16 ? 10.81359 16.86810 -21.09781 1.000 5.07529 ? 16 U A C4 1 ? ATOM 334 O O4 . U A 1 16 ? 9.79458 16.17981 -20.98739 1.000 7.47304 ? 16 U A O4 1 ? ATOM 335 C C5 . U A 1 16 ? 10.86356 18.19651 -21.64518 1.000 6.26162 ? 16 U A C5 1 ? ATOM 336 C C6 . U A 1 16 ? 12.03824 18.83482 -21.72320 1.000 5.70270 ? 16 U A C6 1 ? HETATM 337 O O . HOH B 2 . ? 16.45991 10.60370 6.06438 1.000 24.19295 ? 101 HOH A O 1 ? HETATM 338 O O . HOH B 2 . ? -0.17539 15.46293 -6.71509 1.000 23.83460 ? 102 HOH A O 1 ? HETATM 339 O O . HOH B 2 . ? 3.75263 6.49572 0.00021 0.500 18.82099 ? 103 HOH A O 1 ? HETATM 340 O O . HOH B 2 . ? 2.74289 13.65188 13.67287 1.000 21.92875 ? 104 HOH A O 1 ? HETATM 341 O O . HOH B 2 . ? 2.03990 10.78159 16.61353 1.000 26.38399 ? 105 HOH A O 1 ? HETATM 342 O O . HOH B 2 . ? 5.84628 14.57245 -16.11534 1.000 15.58135 ? 106 HOH A O 1 ? HETATM 343 O O . HOH B 2 . ? -3.73949 14.68657 -17.25798 1.000 16.41439 ? 107 HOH A O 1 ? HETATM 344 O O . HOH B 2 . ? 7.31953 11.40584 -8.62575 1.000 32.06596 ? 108 HOH A O 1 ? HETATM 345 O O . HOH B 2 . ? 3.24423 17.80452 -19.89132 1.000 22.35766 ? 109 HOH A O 1 ? HETATM 346 O O . HOH B 2 . ? -0.63040 20.05957 17.93898 1.000 23.29248 ? 110 HOH A O 1 ? HETATM 347 O O . HOH B 2 . ? -0.56765 20.33176 -21.79128 1.000 20.41690 ? 111 HOH A O 1 ? HETATM 348 O O . HOH B 2 . ? 6.92498 14.14991 -10.33309 1.000 18.00240 ? 112 HOH A O 1 ? HETATM 349 O O . HOH B 2 . ? -0.34060 18.44322 9.97363 1.000 16.21727 ? 113 HOH A O 1 ? HETATM 350 O O . HOH B 2 . ? 10.66286 17.97536 7.61973 1.000 22.20879 ? 114 HOH A O 1 ? HETATM 351 O O . HOH B 2 . ? 6.53187 16.50838 11.57333 1.000 7.18474 ? 115 HOH A O 1 ? HETATM 352 O O . HOH B 2 . ? 16.06462 17.74077 -26.24778 1.000 15.83340 ? 116 HOH A O 1 ? HETATM 353 O O . HOH B 2 . ? 7.31942 16.58177 -21.81260 1.000 16.60349 ? 117 HOH A O 1 ? HETATM 354 O O . HOH B 2 . ? 10.71870 20.64799 7.49786 1.000 20.87587 ? 118 HOH A O 1 ? HETATM 355 O O . HOH B 2 . ? 9.03897 16.00703 10.69925 1.000 12.58355 ? 119 HOH A O 1 ? HETATM 356 O O . HOH B 2 . ? 11.78246 14.64773 2.45562 1.000 21.43874 ? 120 HOH A O 1 ? HETATM 357 O O . HOH B 2 . ? 13.45837 25.77290 -23.93668 1.000 22.75031 ? 121 HOH A O 1 ? HETATM 358 O O . HOH B 2 . ? 3.20421 12.00963 -11.37302 1.000 19.53818 ? 122 HOH A O 1 ? HETATM 359 O O . HOH B 2 . ? -1.937 21.041 -11.811 1.000 17.96210 ? 123 HOH A O 1 ? HETATM 360 O O . HOH B 2 . ? 1.84315 19.81653 19.17993 1.000 15.96777 ? 124 HOH A O 1 ? HETATM 361 O O . HOH B 2 . ? 10.39991 20.25123 -26.26953 1.000 24.16237 ? 125 HOH A O 1 ? HETATM 362 O O . HOH B 2 . ? 8.66847 19.43783 9.68955 1.000 14.81374 ? 126 HOH A O 1 ? HETATM 363 O O . HOH B 2 . ? 5.65422 23.19073 16.79864 1.000 18.47459 ? 127 HOH A O 1 ? HETATM 364 O O . HOH B 2 . ? -0.00005 23.89099 -16.91654 0.330 9.81530 ? 128 HOH A O 1 ? HETATM 365 O O . HOH B 2 . ? 4.53170 14.87408 14.66076 1.000 16.54992 ? 129 HOH A O 1 ? HETATM 366 O O . HOH B 2 . ? 16.92191 15.72559 -20.73171 1.000 22.09217 ? 130 HOH A O 1 ? HETATM 367 O O . HOH B 2 . ? 8.78883 26.42789 12.33872 1.000 20.51181 ? 131 HOH A O 1 ? HETATM 368 O O . HOH B 2 . ? 8.04656 4.61152 1.52156 1.000 24.22365 ? 132 HOH A O 1 ? HETATM 369 O O . HOH B 2 . ? 1.71017 14.06504 -13.98722 1.000 17.01733 ? 133 HOH A O 1 ? HETATM 370 O O . HOH B 2 . ? 16.95881 24.83169 9.58625 1.000 22.40715 ? 134 HOH A O 1 ? HETATM 371 O O . HOH B 2 . ? 7.49296 13.99376 16.26267 1.000 14.76053 ? 135 HOH A O 1 ? HETATM 372 O O . HOH B 2 . ? 3.22768 4.77162 -1.67240 1.000 21.98004 ? 136 HOH A O 1 ? HETATM 373 O O . HOH B 2 . ? 7.93800 23.38039 -24.65516 1.000 20.81688 ? 137 HOH A O 1 ? HETATM 374 O O . HOH B 2 . ? 8.37351 19.95667 -23.24646 1.000 17.03918 ? 138 HOH A O 1 ? HETATM 375 O O . HOH B 2 . ? 17.26309 17.33585 -0.21014 1.000 18.22756 ? 139 HOH A O 1 ? HETATM 376 O O . HOH B 2 . ? 14.05185 15.54408 2.26207 1.000 26.39889 ? 140 HOH A O 1 ? HETATM 377 O O . HOH B 2 . ? 11.97410 9.72473 -3.82729 1.000 20.87283 ? 141 HOH A O 1 ? HETATM 378 O O . HOH B 2 . ? -0.85377 9.37895 -4.45328 1.000 21.88753 ? 142 HOH A O 1 ? HETATM 379 O O . HOH B 2 . ? 11.26358 22.66604 14.98971 1.000 13.25099 ? 143 HOH A O 1 ? HETATM 380 O O . HOH B 2 . ? 2.21210 18.25841 8.84127 1.000 19.23048 ? 144 HOH A O 1 ? HETATM 381 O O . HOH B 2 . ? 15.75590 20.50905 14.23007 1.000 15.11809 ? 145 HOH A O 1 ? HETATM 382 O O . HOH B 2 . ? -0.82076 17.48787 -19.36844 1.000 12.57889 ? 146 HOH A O 1 ? HETATM 383 O O . HOH B 2 . ? 4.19024 16.93427 11.67115 1.000 18.19102 ? 147 HOH A O 1 ? HETATM 384 O O . HOH B 2 . ? 13.07516 19.53493 5.23586 1.000 26.02205 ? 148 HOH A O 1 ? HETATM 385 O O . HOH B 2 . ? 18.77077 15.38189 8.98972 1.000 18.11487 ? 149 HOH A O 1 ? HETATM 386 O O . HOH B 2 . ? 20.69040 11.94574 6.09114 0.330 12.89107 ? 150 HOH A O 1 ? HETATM 387 O O . HOH B 2 . ? 16.50989 21.26060 1.04343 1.000 24.48796 ? 151 HOH A O 1 ? HETATM 388 O O . HOH B 2 . ? -1.93926 11.52060 -5.65989 1.000 23.50055 ? 152 HOH A O 1 ? HETATM 389 O O . HOH B 2 . ? 1.98332 16.59942 -16.77066 1.000 19.12061 ? 153 HOH A O 1 ? HETATM 390 O O . HOH B 2 . ? 20.69042 11.94572 -0.19568 0.330 17.10229 ? 154 HOH A O 1 ? HETATM 391 O O . HOH B 2 . ? 6.17529 16.41551 -19.25665 1.000 16.77762 ? 155 HOH A O 1 ? HETATM 392 O O . HOH B 2 . ? 6.20733 18.20266 9.71930 1.000 15.25365 ? 156 HOH A O 1 ? HETATM 393 O O . HOH B 2 . ? 2.48314 24.72689 10.22487 1.000 24.00348 ? 157 HOH A O 1 ? HETATM 394 O O . HOH B 2 . ? 0.00004 23.89116 -19.87631 0.330 11.06413 ? 158 HOH A O 1 ? HETATM 395 O O . HOH B 2 . ? 8.72405 2.45047 -0.30726 1.000 28.39176 ? 159 HOH A O 1 ? HETATM 396 O O . HOH B 2 . ? 6.14694 25.38482 7.69135 1.000 21.43286 ? 160 HOH A O 1 ? HETATM 397 O O . HOH B 2 . ? 20.68976 11.94614 2.66113 0.330 13.69271 ? 161 HOH A O 1 ? HETATM 398 O O . HOH B 2 . ? 11.24952 17.22488 5.48635 1.000 29.42616 ? 162 HOH A O 1 ? HETATM 399 O O . HOH B 2 . ? 6.85290 14.57507 13.16686 1.000 19.42931 ? 163 HOH A O 1 ? HETATM 400 O O . HOH B 2 . ? 9.07579 11.26363 -5.86774 1.000 22.43553 ? 164 HOH A O 1 ? HETATM 401 O O . HOH B 2 . ? 18.774 22.567 3.476 1.000 19.72519 ? 165 HOH A O 1 ? HETATM 402 O O . HOH B 2 . ? 7.50632 12.32364 19.52831 1.000 20.12510 ? 166 HOH A O 1 ? HETATM 403 O O . HOH B 2 . ? 16.90805 6.08058 -4.67107 1.000 24.82128 ? 167 HOH A O 1 ? HETATM 404 O O . HOH B 2 . ? 4.81085 13.98822 -13.25737 1.000 23.42735 ? 168 HOH A O 1 ? HETATM 405 O O . HOH B 2 . ? 18.78806 10.87207 7.26276 1.000 19.31245 ? 169 HOH A O 1 ? HETATM 406 O O . HOH B 2 . ? 11.68376 26.94312 -21.84435 1.000 25.01181 ? 170 HOH A O 1 ? HETATM 407 O O . HOH B 2 . ? 1.552 7.181 -1.188 1.000 25.30655 ? 171 HOH A O 1 ? HETATM 408 O O . HOH B 2 . ? 15.235 25.034 -25.614 1.000 22.77039 ? 172 HOH A O 1 ? HETATM 409 O O . HOH B 2 . ? 0.67407 9.62462 14.30012 1.000 32.07880 ? 173 HOH A O 1 ? HETATM 410 O O . HOH B 2 . ? 14.59071 26.83845 10.63342 1.000 25.51695 ? 174 HOH A O 1 ? HETATM 411 O O . HOH B 2 . ? 15.00371 11.89481 -6.42769 1.000 20.16162 ? 175 HOH A O 1 ? HETATM 412 O O . HOH B 2 . ? 12.83635 11.34410 -6.27148 1.000 23.05547 ? 176 HOH A O 1 ? HETATM 413 O O . HOH B 2 . ? 12.409 10.090 -8.191 1.000 21.24601 ? 177 HOH A O 1 ? HETATM 414 O O . HOH B 2 . ? 9.906 12.426 -10.004 1.000 23.67204 ? 178 HOH A O 1 ? #