data_9GJ4 # _entry.id 9GJ4 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.404 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 9GJ4 pdb_00009gj4 10.2210/pdb9gj4/pdb WWPDB D_1292141094 ? ? # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2025-07-09 _pdbx_audit_revision_history.part_number ? # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 9GJ4 _pdbx_database_status.recvd_initial_deposition_date 2024-08-21 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_contact_author.id 2 _pdbx_contact_author.email perczel.andras@ttk.elte.hu _pdbx_contact_author.name_first Andras _pdbx_contact_author.name_last Perczel _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0003-1252-6416 # _audit_author.name 'Durvanger, Z.' _audit_author.pdbx_ordinal 1 _audit_author.identifier_ORCID 0000-0002-2652-4916 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country GE _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Chemistry _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 0947-6539 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 31 _citation.language ? _citation.page_first e202404669 _citation.page_last e202404669 _citation.title 'Chemical Evolution of Early Macromolecules: From Prebiotic Oligopeptides to Self-Organizing Biosystems via Amyloid Formation.' _citation.year 2025 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1002/chem.202404669 _citation.pdbx_database_id_PubMed 40197673 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Bencs, F.' 1 0009-0003-9246-2228 primary 'Taricska, N.' 2 0000-0002-9721-953X primary 'Durvanger, Z.' 3 0000-0002-2652-4916 primary 'Horvath, D.' 4 0000-0001-8239-3933 primary 'Fazekas, Z.' 5 0000-0001-5007-4807 primary 'Grolmusz, V.' 6 0000-0001-9456-8876 primary 'Farkas, V.' 7 0000-0002-8815-2783 primary 'Perczel, A.' 8 0000-0003-1252-6416 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'Peptide LYNleQNY' 812.910 1 ? ? ? ? 2 water nat water 18.015 1 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code 'LY(NLE)QNY' _entity_poly.pdbx_seq_one_letter_code_can LYLQNY _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 LEU n 1 2 TYR n 1 3 NLE n 1 4 GLN n 1 5 ASN n 1 6 TYR n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 6 _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 HOH non-polymer . WATER ? 'H2 O' 18.015 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 NLE 'L-peptide linking' n NORLEUCINE ? 'C6 H13 N O2' 131.173 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 LEU 1 1 1 LEU LEU A . n A 1 2 TYR 2 2 2 TYR TYR A . n A 1 3 NLE 3 3 3 NLE NLE A . n A 1 4 GLN 4 4 4 GLN GLN A . n A 1 5 ASN 5 5 5 ASN ASN A . n A 1 6 TYR 6 6 6 TYR TYR A . n # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id HOH _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 101 _pdbx_nonpoly_scheme.auth_seq_num 1 _pdbx_nonpoly_scheme.pdb_mon_id HOH _pdbx_nonpoly_scheme.auth_mon_id HOH _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? BUSTER ? ? ? . 1 ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.20.1_4487 2 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? CrysalisPro ? ? ? . 3 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? CrysalisPro ? ? ? . 4 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 5 # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.000 _cell.angle_beta_esd ? _cell.angle_gamma 90.000 _cell.angle_gamma_esd ? _cell.entry_id 9GJ4 _cell.details ? _cell.formula_units_Z ? _cell.length_a 4.826 _cell.length_a_esd ? _cell.length_b 20.872 _cell.length_b_esd ? _cell.length_c 42.707 _cell.length_c_esd ? _cell.volume 4301.802 _cell.volume_esd ? _cell.Z_PDB 4 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 9GJ4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 9GJ4 _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews ? _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol ? _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? _exptl_crystal.pdbx_mosaic_method ? _exptl_crystal.pdbx_mosaic_block_size ? _exptl_crystal.pdbx_mosaic_block_size_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'EVAPORATION, RECRYSTALLIZATION' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '10 v/v% ethanol, 277K' _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.temp 277 # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'RIGAKU HyPix-6000HE' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2022-09-22 _diffrn_detector.pdbx_frequency ? _diffrn_detector.id ? _diffrn_detector.number_of_axes ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.54184 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source 'ROTATING ANODE' _diffrn_source.target ? _diffrn_source.type 'RIGAKU PhotonJet-R' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1.54184 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_synchrotron_site ? # _reflns.B_iso_Wilson_estimate 8.93 _reflns.entry_id 9GJ4 _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.55 _reflns.d_resolution_low 18.75 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 786 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 100 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 5.63 _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 5.4 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.185 _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.992 _reflns.pdbx_CC_star ? _reflns.pdbx_R_split ? _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_CC_split_method ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_1 ? _reflns.pdbx_aniso_diffraction_limit_2 ? _reflns.pdbx_aniso_diffraction_limit_3 ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvalue_1 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_2 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_3 ? _reflns.pdbx_orthogonalization_convention ? _reflns.pdbx_percent_possible_ellipsoidal ? _reflns.pdbx_percent_possible_spherical ? _reflns.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns.pdbx_percent_possible_spherical_anomalous ? _reflns.pdbx_redundancy_anomalous ? _reflns.pdbx_CC_half_anomalous ? _reflns.pdbx_absDiff_over_sigma_anomalous ? _reflns.pdbx_percent_possible_anomalous ? _reflns.pdbx_observed_signal_threshold ? _reflns.pdbx_signal_type ? _reflns.pdbx_signal_details ? _reflns.pdbx_signal_software_id ? # _reflns_shell.d_res_high 1.55 _reflns_shell.d_res_low 1.61 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 1.5 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 91 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all 0.635 _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.880 _reflns_shell.pdbx_CC_star ? _reflns_shell.pdbx_R_split ? _reflns_shell.percent_possible_all ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_percent_possible_ellipsoidal ? _reflns_shell.pdbx_percent_possible_spherical ? _reflns_shell.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns_shell.pdbx_percent_possible_spherical_anomalous ? _reflns_shell.pdbx_redundancy_anomalous ? _reflns_shell.pdbx_CC_half_anomalous ? _reflns_shell.pdbx_absDiff_over_sigma_anomalous ? _reflns_shell.pdbx_percent_possible_anomalous ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean 7.95 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 9GJ4 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.55 _refine.ls_d_res_low 18.75 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 782 _refine.ls_number_reflns_R_free 78 _refine.ls_number_reflns_R_work 704 _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 99.49 _refine.ls_percent_reflns_R_free 9.97 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1377 _refine.ls_R_factor_R_free 0.1543 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.1358 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.35 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values 'GeoStd + Monomer Library + CDL v1.2' _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.1000 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 8.8104 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.0473 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.details ? _refine_hist.d_res_high 1.55 _refine_hist.d_res_low 18.75 _refine_hist.number_atoms_solvent 1 _refine_hist.number_atoms_total 59 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total ? _refine_hist.pdbx_B_iso_mean_ligand ? _refine_hist.pdbx_B_iso_mean_solvent ? _refine_hist.pdbx_number_atoms_protein 58 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.0179 ? 65 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 1.9154 ? 88 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.0380 ? 9 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.0118 ? 11 ? f_plane_restr ? ? 'X-RAY DIFFRACTION' ? 17.6130 ? 25 ? f_dihedral_angle_d ? ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.d_res_high 1.55 _refine_ls_shell.d_res_low 18.75 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.number_reflns_R_free 78 _refine_ls_shell.number_reflns_R_work 704 _refine_ls_shell.percent_reflns_obs 99.49 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_obs ? _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.R_factor_R_work 0.1358 _refine_ls_shell.redundancy_reflns_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.wR_factor_all ? _refine_ls_shell.wR_factor_obs ? _refine_ls_shell.wR_factor_R_free ? _refine_ls_shell.wR_factor_R_work ? _refine_ls_shell.pdbx_R_complete ? _refine_ls_shell.pdbx_total_number_of_bins_used ? _refine_ls_shell.pdbx_phase_error ? _refine_ls_shell.pdbx_fsc_work ? _refine_ls_shell.pdbx_fsc_free ? _refine_ls_shell.R_factor_R_free 0.1543 # _struct.entry_id 9GJ4 _struct.title 'Structure of the amyloid-forming peptide LYNleQNY' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 9GJ4 _struct_keywords.text 'amyloid, PROTEIN FIBRIL' _struct_keywords.pdbx_keywords 'PROTEIN FIBRIL' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 9GJ4 _struct_ref.pdbx_db_accession 9GJ4 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 9GJ4 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 6 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 9GJ4 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 6 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 6 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 0 ? 1 MORE 0 ? 1 'SSA (A^2)' 1010 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A TYR 2 C ? ? ? 1_555 A NLE 3 N ? ? A TYR 2 A NLE 3 1_555 ? ? ? ? ? ? ? 1.314 ? ? covale2 covale both ? A NLE 3 C ? ? ? 1_555 A GLN 4 N ? ? A NLE 3 A GLN 4 1_555 ? ? ? ? ? ? ? 1.334 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _pdbx_modification_feature.ordinal 1 _pdbx_modification_feature.label_comp_id NLE _pdbx_modification_feature.label_asym_id A _pdbx_modification_feature.label_seq_id 3 _pdbx_modification_feature.label_alt_id ? _pdbx_modification_feature.modified_residue_label_comp_id . _pdbx_modification_feature.modified_residue_label_asym_id . _pdbx_modification_feature.modified_residue_label_seq_id . _pdbx_modification_feature.modified_residue_label_alt_id . _pdbx_modification_feature.auth_comp_id NLE _pdbx_modification_feature.auth_asym_id A _pdbx_modification_feature.auth_seq_id 3 _pdbx_modification_feature.PDB_ins_code ? _pdbx_modification_feature.symmetry 1_555 _pdbx_modification_feature.modified_residue_auth_comp_id . _pdbx_modification_feature.modified_residue_auth_asym_id . _pdbx_modification_feature.modified_residue_auth_seq_id . _pdbx_modification_feature.modified_residue_PDB_ins_code . _pdbx_modification_feature.modified_residue_symmetry . _pdbx_modification_feature.comp_id_linking_atom . _pdbx_modification_feature.modified_residue_id_linking_atom . _pdbx_modification_feature.modified_residue_id LEU _pdbx_modification_feature.ref_pcm_id 1 _pdbx_modification_feature.ref_comp_id NLE _pdbx_modification_feature.type Norleucine _pdbx_modification_feature.category 'Named protein modification' # _pdbx_entry_details.entry_id 9GJ4 _pdbx_entry_details.has_ligand_of_interest N _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_protein_modification Y # loop_ _space_group_symop.id _space_group_symop.operation_xyz 1 x,y,z 2 x+1/2,-y+1/2,-z 3 -x,y+1/2,-z+1/2 4 -x+1/2,-y,z+1/2 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ASN N N N N 1 ASN CA C N S 2 ASN C C N N 3 ASN O O N N 4 ASN CB C N N 5 ASN CG C N N 6 ASN OD1 O N N 7 ASN ND2 N N N 8 ASN OXT O N N 9 ASN H H N N 10 ASN H2 H N N 11 ASN HA H N N 12 ASN HB2 H N N 13 ASN HB3 H N N 14 ASN HD21 H N N 15 ASN HD22 H N N 16 ASN HXT H N N 17 GLN N N N N 18 GLN CA C N S 19 GLN C C N N 20 GLN O O N N 21 GLN CB C N N 22 GLN CG C N N 23 GLN CD C N N 24 GLN OE1 O N N 25 GLN NE2 N N N 26 GLN OXT O N N 27 GLN H H N N 28 GLN H2 H N N 29 GLN HA H N N 30 GLN HB2 H N N 31 GLN HB3 H N N 32 GLN HG2 H N N 33 GLN HG3 H N N 34 GLN HE21 H N N 35 GLN HE22 H N N 36 GLN HXT H N N 37 HOH O O N N 38 HOH H1 H N N 39 HOH H2 H N N 40 LEU N N N N 41 LEU CA C N S 42 LEU C C N N 43 LEU O O N N 44 LEU CB C N N 45 LEU CG C N N 46 LEU CD1 C N N 47 LEU CD2 C N N 48 LEU OXT O N N 49 LEU H H N N 50 LEU H2 H N N 51 LEU HA H N N 52 LEU HB2 H N N 53 LEU HB3 H N N 54 LEU HG H N N 55 LEU HD11 H N N 56 LEU HD12 H N N 57 LEU HD13 H N N 58 LEU HD21 H N N 59 LEU HD22 H N N 60 LEU HD23 H N N 61 LEU HXT H N N 62 NLE N N N N 63 NLE CA C N S 64 NLE C C N N 65 NLE O O N N 66 NLE OXT O N N 67 NLE CB C N N 68 NLE CG C N N 69 NLE CD C N N 70 NLE CE C N N 71 NLE H H N N 72 NLE H2 H N N 73 NLE HA H N N 74 NLE HXT H N N 75 NLE HB2 H N N 76 NLE HB3 H N N 77 NLE HG2 H N N 78 NLE HG3 H N N 79 NLE HD2 H N N 80 NLE HD3 H N N 81 NLE HE1 H N N 82 NLE HE2 H N N 83 NLE HE3 H N N 84 TYR N N N N 85 TYR CA C N S 86 TYR C C N N 87 TYR O O N N 88 TYR CB C N N 89 TYR CG C Y N 90 TYR CD1 C Y N 91 TYR CD2 C Y N 92 TYR CE1 C Y N 93 TYR CE2 C Y N 94 TYR CZ C Y N 95 TYR OH O N N 96 TYR OXT O N N 97 TYR H H N N 98 TYR H2 H N N 99 TYR HA H N N 100 TYR HB2 H N N 101 TYR HB3 H N N 102 TYR HD1 H N N 103 TYR HD2 H N N 104 TYR HE1 H N N 105 TYR HE2 H N N 106 TYR HH H N N 107 TYR HXT H N N 108 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ASN N CA sing N N 1 ASN N H sing N N 2 ASN N H2 sing N N 3 ASN CA C sing N N 4 ASN CA CB sing N N 5 ASN CA HA sing N N 6 ASN C O doub N N 7 ASN C OXT sing N N 8 ASN CB CG sing N N 9 ASN CB HB2 sing N N 10 ASN CB HB3 sing N N 11 ASN CG OD1 doub N N 12 ASN CG ND2 sing N N 13 ASN ND2 HD21 sing N N 14 ASN ND2 HD22 sing N N 15 ASN OXT HXT sing N N 16 GLN N CA sing N N 17 GLN N H sing N N 18 GLN N H2 sing N N 19 GLN CA C sing N N 20 GLN CA CB sing N N 21 GLN CA HA sing N N 22 GLN C O doub N N 23 GLN C OXT sing N N 24 GLN CB CG sing N N 25 GLN CB HB2 sing N N 26 GLN CB HB3 sing N N 27 GLN CG CD sing N N 28 GLN CG HG2 sing N N 29 GLN CG HG3 sing N N 30 GLN CD OE1 doub N N 31 GLN CD NE2 sing N N 32 GLN NE2 HE21 sing N N 33 GLN NE2 HE22 sing N N 34 GLN OXT HXT sing N N 35 HOH O H1 sing N N 36 HOH O H2 sing N N 37 LEU N CA sing N N 38 LEU N H sing N N 39 LEU N H2 sing N N 40 LEU CA C sing N N 41 LEU CA CB sing N N 42 LEU CA HA sing N N 43 LEU C O doub N N 44 LEU C OXT sing N N 45 LEU CB CG sing N N 46 LEU CB HB2 sing N N 47 LEU CB HB3 sing N N 48 LEU CG CD1 sing N N 49 LEU CG CD2 sing N N 50 LEU CG HG sing N N 51 LEU CD1 HD11 sing N N 52 LEU CD1 HD12 sing N N 53 LEU CD1 HD13 sing N N 54 LEU CD2 HD21 sing N N 55 LEU CD2 HD22 sing N N 56 LEU CD2 HD23 sing N N 57 LEU OXT HXT sing N N 58 NLE N CA sing N N 59 NLE N H sing N N 60 NLE N H2 sing N N 61 NLE CA C sing N N 62 NLE CA CB sing N N 63 NLE CA HA sing N N 64 NLE C O doub N N 65 NLE C OXT sing N N 66 NLE OXT HXT sing N N 67 NLE CB CG sing N N 68 NLE CB HB2 sing N N 69 NLE CB HB3 sing N N 70 NLE CG CD sing N N 71 NLE CG HG2 sing N N 72 NLE CG HG3 sing N N 73 NLE CD CE sing N N 74 NLE CD HD2 sing N N 75 NLE CD HD3 sing N N 76 NLE CE HE1 sing N N 77 NLE CE HE2 sing N N 78 NLE CE HE3 sing N N 79 TYR N CA sing N N 80 TYR N H sing N N 81 TYR N H2 sing N N 82 TYR CA C sing N N 83 TYR CA CB sing N N 84 TYR CA HA sing N N 85 TYR C O doub N N 86 TYR C OXT sing N N 87 TYR CB CG sing N N 88 TYR CB HB2 sing N N 89 TYR CB HB3 sing N N 90 TYR CG CD1 doub Y N 91 TYR CG CD2 sing Y N 92 TYR CD1 CE1 sing Y N 93 TYR CD1 HD1 sing N N 94 TYR CD2 CE2 doub Y N 95 TYR CD2 HD2 sing N N 96 TYR CE1 CZ doub Y N 97 TYR CE1 HE1 sing N N 98 TYR CE2 CZ sing Y N 99 TYR CE2 HE2 sing N N 100 TYR CZ OH sing N N 101 TYR OH HH sing N N 102 TYR OXT HXT sing N N 103 # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'Hungarian National Research, Development and Innovation Office' Hungary 2018-1.2.1-NKP-2018-00005 1 'European Regional Development Fund' 'European Union' 'VEKOP-2.3.2-16-2017-00014, VEKOP-2.3.3-15-2017-00018' 2 'Hungarian National Research, Development and Innovation Office' Hungary 'Thematic Excellence Program Synth+' 3 # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'in silico model' _pdbx_initial_refinement_model.source_name Other _pdbx_initial_refinement_model.accession_code ? _pdbx_initial_refinement_model.details 'ideal 5 residue beta strand' # _space_group.name_H-M_alt 'P 21 21 21' _space_group.name_Hall 'P 2ac 2ab' _space_group.IT_number 19 _space_group.crystal_system orthorhombic _space_group.id 1 # _atom_sites.entry_id 9GJ4 _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 0.207211 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.047911 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.023415 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol _atom_type.scat_dispersion_real _atom_type.scat_dispersion_imag _atom_type.scat_Cromer_Mann_a1 _atom_type.scat_Cromer_Mann_a2 _atom_type.scat_Cromer_Mann_a3 _atom_type.scat_Cromer_Mann_a4 _atom_type.scat_Cromer_Mann_b1 _atom_type.scat_Cromer_Mann_b2 _atom_type.scat_Cromer_Mann_b3 _atom_type.scat_Cromer_Mann_b4 _atom_type.scat_Cromer_Mann_c _atom_type.scat_source _atom_type.scat_dispersion_source C ? ? 3.54356 2.42580 ? ? 25.62398 1.50364 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? H ? ? 0.51345 0.48472 ? ? 24.73122 6.32584 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? N ? ? 4.01032 2.96436 ? ? 19.97189 1.75589 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? O ? ? 4.49882 3.47563 ? ? 15.80542 1.70748 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_alt_id _atom_site.label_comp_id _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.label_seq_id _atom_site.pdbx_PDB_ins_code _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_seq_id _atom_site.auth_comp_id _atom_site.auth_asym_id _atom_site.auth_atom_id _atom_site.pdbx_PDB_model_num ATOM 1 N N . LEU A 1 1 ? -0.32305 -1.90228 -4.91205 1.000 8.20231 ? 1 LEU A N 1 ATOM 2 C CA A LEU A 1 1 ? -0.09320 -0.74160 -3.98489 0.670 7.06957 ? 1 LEU A CA 1 ATOM 3 C CA B LEU A 1 1 ? -0.09779 -0.75519 -3.98997 0.330 7.12644 ? 1 LEU A CA 1 ATOM 4 C C . LEU A 1 1 ? -0.80456 -1.00245 -2.66332 1.000 6.31001 ? 1 LEU A C 1 ATOM 5 O O . LEU A 1 1 ? -2.02638 -1.16882 -2.60488 1.000 6.76891 ? 1 LEU A O 1 ATOM 6 C CB A LEU A 1 1 ? -0.57712 0.55646 -4.63135 0.670 7.85576 ? 1 LEU A CB 1 ATOM 7 C CB B LEU A 1 1 ? -0.58818 0.52287 -4.64903 0.330 7.86403 ? 1 LEU A CB 1 ATOM 8 C CG A LEU A 1 1 ? 0.03845 1.84513 -4.09833 0.670 8.86059 ? 1 LEU A CG 1 ATOM 9 C CG B LEU A 1 1 ? -0.46560 1.83964 -3.90293 0.330 9.84605 ? 1 LEU A CG 1 ATOM 10 C CD1 A LEU A 1 1 ? -0.16936 2.91378 -5.14108 0.670 13.56716 ? 1 LEU A CD1 1 ATOM 11 C CD1 B LEU A 1 1 ? 0.92640 2.08167 -3.32616 0.330 10.56286 ? 1 LEU A CD1 1 ATOM 12 C CD2 A LEU A 1 1 ? -0.58489 2.24567 -2.76866 0.670 10.38537 ? 1 LEU A CD2 1 ATOM 13 C CD2 B LEU A 1 1 ? -0.82489 2.87134 -4.93488 0.330 11.88348 ? 1 LEU A CD2 1 ATOM 14 H H1 A LEU A 1 1 ? 0.06909 -1.73933 -5.69421 0.670 9.85980 ? 1 LEU A H1 1 ATOM 15 H H1 B LEU A 1 1 ? 0.02438 -1.71443 -5.70961 0.330 9.85980 ? 1 LEU A H1 1 ATOM 16 H H2 A LEU A 1 1 ? 0.02290 -2.64037 -4.55478 0.670 9.85980 ? 1 LEU A H2 1 ATOM 17 H H2 B LEU A 1 1 ? 0.06881 -2.62986 -4.58165 0.330 9.85980 ? 1 LEU A H2 1 ATOM 18 H H3 A LEU A 1 1 ? -1.19722 -2.01429 -5.03606 0.670 9.85980 ? 1 LEU A H3 1 ATOM 19 H H3 B LEU A 1 1 ? -1.19698 -2.04818 -4.99604 0.330 9.85980 ? 1 LEU A H3 1 ATOM 20 H HA . LEU A 1 1 ? 0.85307 -0.62881 -3.80388 1.000 8.56876 ? 1 LEU A HA 1 ATOM 21 H HB2 A LEU A 1 1 ? -0.37633 0.51419 -5.57940 0.670 9.44394 ? 1 LEU A HB2 1 ATOM 22 H HB2 B LEU A 1 1 ? -0.09205 0.63069 -5.47555 0.330 9.45386 ? 1 LEU A HB2 1 ATOM 23 H HB3 A LEU A 1 1 ? -1.53573 0.62062 -4.49779 0.670 9.44394 ? 1 LEU A HB3 1 ATOM 24 H HB3 B LEU A 1 1 ? -1.53164 0.40535 -4.84134 0.330 9.45386 ? 1 LEU A HB3 1 ATOM 25 H HG A LEU A 1 1 ? 0.98622 1.72802 -3.92828 0.670 10.64974 ? 1 LEU A HG 1 ATOM 26 H HG B LEU A 1 1 ? -1.03964 1.86965 -3.12160 0.330 11.83229 ? 1 LEU A HG 1 ATOM 27 H HD11 A LEU A 1 1 ? -0.29133 3.76796 -4.69792 0.670 16.29762 ? 1 LEU A HD11 1 ATOM 28 H HD11 B LEU A 1 1 ? 1.51955 2.36310 -4.04021 0.330 12.69245 ? 1 LEU A HD11 1 ATOM 29 H HD12 A LEU A 1 1 ? 0.61007 2.94846 -5.71743 0.670 16.29762 ? 1 LEU A HD12 1 ATOM 30 H HD12 B LEU A 1 1 ? 0.87172 2.77428 -2.64925 0.330 12.69245 ? 1 LEU A HD12 1 ATOM 31 H HD13 A LEU A 1 1 ? -0.95744 2.69652 -5.66323 0.670 16.29762 ? 1 LEU A HD13 1 ATOM 32 H HD13 B LEU A 1 1 ? 1.25209 1.25788 -2.93095 0.330 12.69245 ? 1 LEU A HD13 1 ATOM 33 H HD21 A LEU A 1 1 ? -0.78139 1.44474 -2.25799 0.670 12.47948 ? 1 LEU A HD21 1 ATOM 34 H HD21 B LEU A 1 1 ? -1.02309 3.70920 -4.48811 0.330 14.27721 ? 1 LEU A HD21 1 ATOM 35 H HD22 A LEU A 1 1 ? 0.04166 2.80325 -2.28138 0.670 12.47948 ? 1 LEU A HD22 1 ATOM 36 H HD22 B LEU A 1 1 ? -0.07515 2.98798 -5.53919 0.330 14.27721 ? 1 LEU A HD22 1 ATOM 37 H HD23 A LEU A 1 1 ? -1.40291 2.73833 -2.93903 0.670 12.47948 ? 1 LEU A HD23 1 ATOM 38 H HD23 B LEU A 1 1 ? -1.60292 2.56724 -5.42792 0.330 14.27721 ? 1 LEU A HD23 1 ATOM 39 N N . TYR A 1 2 ? -0.01202 -1.02716 -1.60369 1.000 5.60563 ? 2 TYR A N 1 ATOM 40 C CA . TYR A 1 2 ? -0.46153 -1.37545 -0.27370 1.000 3.36862 ? 2 TYR A CA 1 ATOM 41 C C . TYR A 1 2 ? 0.19996 -0.49148 0.75620 1.000 5.07857 ? 2 TYR A C 1 ATOM 42 O O . TYR A 1 2 ? 1.40797 -0.36308 0.78824 1.000 5.93858 ? 2 TYR A O 1 ATOM 43 C CB . TYR A 1 2 ? -0.09623 -2.81692 0.03210 1.000 5.51504 ? 2 TYR A CB 1 ATOM 44 C CG . TYR A 1 2 ? -0.81485 -3.55405 1.14691 1.000 7.34800 ? 2 TYR A CG 1 ATOM 45 C CD1 . TYR A 1 2 ? -1.86344 -3.01653 1.88260 1.000 3.81185 ? 2 TYR A CD1 1 ATOM 46 C CD2 . TYR A 1 2 ? -0.42549 -4.81804 1.43820 1.000 3.90949 ? 2 TYR A CD2 1 ATOM 47 C CE1 . TYR A 1 2 ? -2.50295 -3.78001 2.86530 1.000 4.84535 ? 2 TYR A CE1 1 ATOM 48 C CE2 . TYR A 1 2 ? -1.04407 -5.57231 2.41354 1.000 6.67378 ? 2 TYR A CE2 1 ATOM 49 C CZ . TYR A 1 2 ? -2.08126 -5.05119 3.10770 1.000 6.69413 ? 2 TYR A CZ 1 ATOM 50 O OH . TYR A 1 2 ? -2.69530 -5.87583 4.04851 1.000 7.63844 ? 2 TYR A OH 1 ATOM 51 H H . TYR A 1 2 ? 0.82629 -0.83748 -1.63304 1.000 6.74378 ? 2 TYR A H 1 ATOM 52 H HA . TYR A 1 2 ? -1.42396 -1.26536 -0.22363 1.000 4.05938 ? 2 TYR A HA 1 ATOM 53 H HB2 . TYR A 1 2 ? -0.25075 -3.33137 -0.77559 1.000 6.63507 ? 2 TYR A HB2 1 ATOM 54 H HB3 . TYR A 1 2 ? 0.84629 -2.83350 0.26077 1.000 6.63507 ? 2 TYR A HB3 1 ATOM 55 H HD1 . TYR A 1 2 ? -2.14201 -2.14407 1.72098 1.000 4.59125 ? 2 TYR A HD1 1 ATOM 56 H HD2 . TYR A 1 2 ? 0.28307 -5.19019 0.96454 1.000 4.70841 ? 2 TYR A HD2 1 ATOM 57 H HE1 . TYR A 1 2 ? -3.21131 -3.42137 3.34956 1.000 5.83145 ? 2 TYR A HE1 1 ATOM 58 H HE2 . TYR A 1 2 ? -0.74906 -6.43581 2.59308 1.000 8.02557 ? 2 TYR A HE2 1 ATOM 59 H HH . TYR A 1 2 ? -3.51153 -5.68638 4.10742 1.000 9.18315 ? 2 TYR A HH 1 HETATM 60 N N . NLE A 1 3 ? -0.61862 0.10811 1.59121 1.000 4.31603 ? 3 NLE A N 1 HETATM 61 C CA . NLE A 1 3 ? -0.10898 0.93577 2.70985 1.000 4.84000 ? 3 NLE A CA 1 HETATM 62 C C . NLE A 1 3 ? -0.75044 0.46600 3.98784 1.000 3.70044 ? 3 NLE A C 1 HETATM 63 O O . NLE A 1 3 ? -1.95248 0.36904 4.03812 1.000 4.96765 ? 3 NLE A O 1 HETATM 64 C CB . NLE A 1 3 ? -0.40896 2.40136 2.42073 1.000 9.72376 ? 3 NLE A CB 1 HETATM 65 C CG . NLE A 1 3 ? 0.18560 3.37421 3.41269 1.000 20.03720 ? 3 NLE A CG 1 HETATM 66 C CD . NLE A 1 3 ? 0.01193 4.87979 2.94816 1.000 23.09471 ? 3 NLE A CD 1 HETATM 67 C CE . NLE A 1 3 ? 0.11753 5.21098 1.41828 1.000 23.35106 ? 3 NLE A CE 1 HETATM 68 H H . NLE A 1 3 ? -1.50632 0.12135 1.57881 1.000 5.19626 ? 3 NLE A H 1 HETATM 69 H HA . NLE A 1 3 ? 0.85255 0.86221 2.81451 1.000 5.82503 ? 3 NLE A HA 1 HETATM 70 H HB2 . NLE A 1 3 ? -0.05322 2.62207 1.54573 1.000 11.68554 ? 3 NLE A HB2 1 HETATM 71 H HB3 . NLE A 1 3 ? -1.37080 2.52664 2.42907 1.000 11.68554 ? 3 NLE A HB3 1 HETATM 72 H HG2 . NLE A 1 3 ? -0.25856 3.26867 4.26854 1.000 24.06166 ? 3 NLE A HG2 1 HETATM 73 H HG3 . NLE A 1 3 ? 1.13411 3.19428 3.50675 1.000 24.06166 ? 3 NLE A HG3 1 HETATM 74 H HD2 . NLE A 1 3 ? -0.86704 5.17543 3.23260 1.000 27.73068 ? 3 NLE A HD2 1 HETATM 75 H HD3 . NLE A 1 3 ? 0.69760 5.40454 3.39020 1.000 27.73068 ? 3 NLE A HD3 1 HETATM 76 H HE1 . NLE A 1 3 ? 1.05274 5.30890 1.18018 1.000 28.03830 ? 3 NLE A HE1 1 HETATM 77 H HE2 . NLE A 1 3 ? -0.27904 4.48612 0.91014 1.000 28.03830 ? 3 NLE A HE2 1 HETATM 78 H HE3 . NLE A 1 3 ? -0.35735 6.03793 1.24068 1.000 28.03830 ? 3 NLE A HE3 1 ATOM 79 N N . GLN A 1 4 ? 0.06233 0.18354 5.00780 1.000 4.28653 ? 4 GLN A N 1 ATOM 80 C CA . GLN A 1 4 ? -0.40495 -0.20318 6.34451 1.000 4.07184 ? 4 GLN A CA 1 ATOM 81 C C . GLN A 1 4 ? 0.25666 0.69953 7.36208 1.000 5.10976 ? 4 GLN A C 1 ATOM 82 O O . GLN A 1 4 ? 1.47597 0.83560 7.36845 1.000 4.62746 ? 4 GLN A O 1 ATOM 83 C CB . GLN A 1 4 ? -0.06072 -1.65273 6.66327 1.000 5.80855 ? 4 GLN A CB 1 ATOM 84 C CG . GLN A 1 4 ? -0.76011 -2.63536 5.74806 1.000 8.50331 ? 4 GLN A CG 1 ATOM 85 C CD . GLN A 1 4 ? -0.40302 -4.07810 6.10261 1.000 8.64148 ? 4 GLN A CD 1 ATOM 86 O OE1 . GLN A 1 4 ? -1.25111 -4.87210 6.52888 1.000 13.06809 ? 4 GLN A OE1 1 ATOM 87 N NE2 . GLN A 1 4 ? 0.83252 -4.40323 5.94424 1.000 6.21978 ? 4 GLN A NE2 1 ATOM 88 H H . GLN A 1 4 ? 0.92009 0.20894 4.95126 1.000 5.16087 ? 4 GLN A H 1 ATOM 89 H HA . GLN A 1 4 ? -1.37070 -0.12363 6.38796 1.000 4.90324 ? 4 GLN A HA 1 ATOM 90 H HB2 . GLN A 1 4 ? 0.89596 -1.77902 6.56480 1.000 6.98729 ? 4 GLN A HB2 1 ATOM 91 H HB3 . GLN A 1 4 ? -0.32903 -1.84782 7.57478 1.000 6.98729 ? 4 GLN A HB3 1 ATOM 92 H HG2 . GLN A 1 4 ? -1.72023 -2.52789 5.83474 1.000 10.22100 ? 4 GLN A HG2 1 ATOM 93 H HG3 . GLN A 1 4 ? -0.48914 -2.46973 4.83152 1.000 10.22100 ? 4 GLN A HG3 1 ATOM 94 H HE21 . GLN A 1 4 ? 1.39653 -3.82183 5.65533 1.000 7.48077 ? 4 GLN A HE21 1 ATOM 95 H HE22 . GLN A 1 4 ? 1.09389 -5.20183 6.12734 1.000 7.48077 ? 4 GLN A HE22 1 ATOM 96 N N . ASN A 1 5 ? -0.55216 1.36936 8.16096 1.000 5.43824 ? 5 ASN A N 1 ATOM 97 C CA . ASN A 1 5 ? -0.06446 2.22694 9.22440 1.000 6.41594 ? 5 ASN A CA 1 ATOM 98 C C . ASN A 1 5 ? -0.53040 1.68046 10.56091 1.000 4.82267 ? 5 ASN A C 1 ATOM 99 O O . ASN A 1 5 ? -1.72489 1.45433 10.76143 1.000 7.39105 ? 5 ASN A O 1 ATOM 100 C CB . ASN A 1 5 ? -0.55799 3.65556 9.02333 1.000 6.70839 ? 5 ASN A CB 1 ATOM 101 C CG . ASN A 1 5 ? -0.01565 4.26823 7.75163 1.000 7.40027 ? 5 ASN A CG 1 ATOM 102 O OD1 . ASN A 1 5 ? 1.20142 4.30583 7.52669 1.000 9.45064 ? 5 ASN A OD1 1 ATOM 103 N ND2 . ASN A 1 5 ? -0.91624 4.76221 6.92321 1.000 10.38493 ? 5 ASN A ND2 1 ATOM 104 H H . ASN A 1 5 ? -1.40997 1.34283 8.10557 1.000 6.54291 ? 5 ASN A H 1 ATOM 105 H HA . ASN A 1 5 ? 0.90549 2.23485 9.22943 1.000 7.71616 ? 5 ASN A HA 1 ATOM 106 H HB2 . ASN A 1 5 ? -1.52652 3.65400 8.97005 1.000 8.06710 ? 5 ASN A HB2 1 ATOM 107 H HB3 . ASN A 1 5 ? -0.26772 4.20155 9.77068 1.000 8.06710 ? 5 ASN A HB3 1 ATOM 108 H HD21 . ASN A 1 5 ? -1.75177 4.72271 7.12303 1.000 12.47895 ? 5 ASN A HD21 1 ATOM 109 H HD22 . ASN A 1 5 ? -0.66763 5.12363 6.18351 1.000 12.47895 ? 5 ASN A HD22 1 ATOM 110 N N . TYR A 1 6 ? 0.39974 1.56115 11.48533 1.000 5.15855 ? 6 TYR A N 1 ATOM 111 C CA . TYR A 1 6 ? 0.12425 1.02003 12.80992 1.000 5.84566 ? 6 TYR A CA 1 ATOM 112 C C . TYR A 1 6 ? 0.59153 1.90494 13.92044 1.000 9.16911 ? 6 TYR A C 1 ATOM 113 O O . TYR A 1 6 ? 1.39713 2.78024 13.67594 1.000 9.76340 ? 6 TYR A O 1 ATOM 114 C CB . TYR A 1 6 ? 0.85219 -0.30309 13.02456 1.000 6.76645 ? 6 TYR A CB 1 ATOM 115 C CG . TYR A 1 6 ? 0.57864 -1.40638 12.06547 1.000 7.17223 ? 6 TYR A CG 1 ATOM 116 C CD1 . TYR A 1 6 ? 1.35913 -1.53362 10.94605 1.000 7.29649 ? 6 TYR A CD1 1 ATOM 117 C CD2 . TYR A 1 6 ? -0.39585 -2.36179 12.31653 1.000 7.65466 ? 6 TYR A CD2 1 ATOM 118 C CE1 . TYR A 1 6 ? 1.17334 -2.53136 10.07413 1.000 9.04108 ? 6 TYR A CE1 1 ATOM 119 C CE2 . TYR A 1 6 ? -0.63144 -3.38798 11.40376 1.000 7.83943 ? 6 TYR A CE2 1 ATOM 120 C CZ . TYR A 1 6 ? 0.16528 -3.47247 10.31078 1.000 7.17242 ? 6 TYR A CZ 1 ATOM 121 O OH . TYR A 1 6 ? 0.01637 -4.47959 9.40641 1.000 10.55623 ? 6 TYR A OH 1 ATOM 122 O OXT . TYR A 1 6 ? 0.29921 1.66582 15.08215 1.000 10.23992 ? 6 TYR A OXT 1 ATOM 123 H H . TYR A 1 6 ? 1.22091 1.79065 11.37302 1.000 6.20728 ? 6 TYR A H 1 ATOM 124 H HA . TYR A 1 6 ? -0.83918 0.91464 12.84989 1.000 7.03182 ? 6 TYR A HA 1 ATOM 125 H HB2 . TYR A 1 6 ? 1.80521 -0.12721 12.98309 1.000 8.13677 ? 6 TYR A HB2 1 ATOM 126 H HB3 . TYR A 1 6 ? 0.61375 -0.63317 13.90495 1.000 8.13677 ? 6 TYR A HB3 1 ATOM 127 H HD1 . TYR A 1 6 ? 2.03314 -0.91239 10.78895 1.000 8.77281 ? 6 TYR A HD1 1 ATOM 128 H HD2 . TYR A 1 6 ? -0.89538 -2.31691 13.09970 1.000 9.20262 ? 6 TYR A HD2 1 ATOM 129 H HE1 . TYR A 1 6 ? 1.70959 -2.59878 9.31730 1.000 10.86633 ? 6 TYR A HE1 1 ATOM 130 H HE2 . TYR A 1 6 ? -1.31835 -3.99967 11.54122 1.000 9.42434 ? 6 TYR A HE2 1 ATOM 131 H HH . TYR A 1 6 ? 0.17363 -4.19560 8.63167 1.000 12.68451 ? 6 TYR A HH 1 HETATM 132 O O . HOH B 2 . ? 2.32376 4.53345 11.80778 1.000 9.71542 ? 101 HOH A O 1 #