data_9VF8

_audit_conform.dict_name      mmcif_pdbx_vrpt.dic
_audit_conform.dict_version   0.070
_audit_conform.dict_location  https://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx_vrpt.dic
#
_entry.id  9VF8
#
loop_
_entity.id
_entity.type
_entity.src_method
_entity.pdbx_description
_entity.formula_weight
_entity.pdbx_number_of_molecules
_entity.pdbx_ec
_entity.pdbx_mutation
_entity.pdbx_fragment
_entity.details
1  polymer      man  "histidine kinase"       12714.391  1  2.7.13.3  ?  ?  ?  
2  non-polymer  nat  "FLAVIN MONONUCLEOTIDE"    456.344  1  ?         ?  ?  ?  
#
loop_
_struct_asym.id
_struct_asym.pdbx_blank_PDB_chainid_flag
_struct_asym.pdbx_modified
_struct_asym.entity_id
_struct_asym.details
A  ?     N  1  ?  
B  ?     N  2  ?  
#
_pdbx_vrpt_database.id             PDB
_pdbx_vrpt_database.code           9VF8
_pdbx_vrpt_database.extended_code  pdb_00009vf8
#
_pdbx_vrpt_exptl.ordinal  1
_pdbx_vrpt_exptl.method   x-ray
#
_pdbx_vrpt_summary.entry_id                    9VF8
_pdbx_vrpt_summary.extended_entry_id           pdb_00009vf8
_pdbx_vrpt_summary.PDB_deposition_date         2025-06-10
_pdbx_vrpt_summary.PDB_revision_number         1
_pdbx_vrpt_summary.PDB_revision_date           2025-06-25
_pdbx_vrpt_summary.report_creation_date        2025-06-19:01:10
_pdbx_vrpt_summary.attempted_validation_steps  molprobity,validation-pack,xtriage,eds,mogul,buster-report,validation_schema,percentiles,writexml,writecif,writepdf
_pdbx_vrpt_summary.ligands_for_buster_report   Y
#
loop_
_pdbx_vrpt_entity.id
_pdbx_vrpt_entity.type
_pdbx_vrpt_entity.description
1  polymer      "histidine kinase"  
2  non-polymer  "FLAVIN MONONUCLEOTIDE"  
#
loop_
_pdbx_vrpt_asym.label_asym_id
_pdbx_vrpt_asym.entity_id
A  1  
B  2  
#
loop_
_pdbx_vrpt_percentile_list.id
_pdbx_vrpt_percentile_list.range
_pdbx_vrpt_percentile_list.exp_method
1  all    x-ray  
2  3.352  x-ray  
#
loop_
_pdbx_vrpt_percentile_type.id
_pdbx_vrpt_percentile_type.type
1  all_atom_clashscore           
2  Ramachandran_outlier_percent  
3  rotamer_outliers_percent      
4  RSRZ_outliers_percent         
5  R_value_R_free                
#
loop_
_pdbx_vrpt_percentile_conditions.id
_pdbx_vrpt_percentile_conditions.percentile_list_id
_pdbx_vrpt_percentile_conditions.type_id
_pdbx_vrpt_percentile_conditions.rank
_pdbx_vrpt_percentile_conditions.number_entries_total
_pdbx_vrpt_percentile_conditions.res_high
_pdbx_vrpt_percentile_conditions.res_low
 1  1  1  12.06  180529     ?     ?  
 2  2  1  35.36    1035  3.32  3.40  
 3  1  2  12.90  177936     ?     ?  
 4  2  2  39.05    1037  3.32  3.40  
 5  1  3  69.77  177891     ?     ?  
 6  2  3  82.06    1037  3.32  3.40  
 7  1  4  78.96  164620     ?     ?  
 8  2  4  71.84    1012  3.32  3.40  
 9  1  5  19.04  164625     ?     ?  
10  2  5  62.31    1012  3.32  3.40  
#
loop_
_pdbx_vrpt_percentile_entity_view.ordinal
_pdbx_vrpt_percentile_entity_view.conditions_id
_pdbx_vrpt_percentile_entity_view.type_id
_pdbx_vrpt_percentile_entity_view.label_asym_id
_pdbx_vrpt_percentile_entity_view.PDB_model_num
_pdbx_vrpt_percentile_entity_view.entity_id
_pdbx_vrpt_percentile_entity_view.auth_asym_id
_pdbx_vrpt_percentile_entity_view.rank
1  3  2  A  1  1  A  12.90  
2  4  2  A  1  1  A  39.05  
3  5  3  A  1  1  A  69.77  
4  6  3  A  1  1  A  82.06  
5  7  4  A  1  1  A  78.96  
6  8  4  A  1  1  A  71.84  
#
_pdbx_vrpt_summary_entity_geometry.ordinal          1
_pdbx_vrpt_summary_entity_geometry.PDB_model_num    1
_pdbx_vrpt_summary_entity_geometry.entity_id        1
_pdbx_vrpt_summary_entity_geometry.label_asym_id    A
_pdbx_vrpt_summary_entity_geometry.auth_asym_id     A
_pdbx_vrpt_summary_entity_geometry.angles_RMSZ      0.95
_pdbx_vrpt_summary_entity_geometry.bonds_RMSZ       0.46
_pdbx_vrpt_summary_entity_geometry.num_bonds_RMSZ   850
_pdbx_vrpt_summary_entity_geometry.num_angles_RMSZ  1160
#
_pdbx_vrpt_summary_geometry.ordinal                        1
_pdbx_vrpt_summary_geometry.percent_ramachandran_outliers  0.97
_pdbx_vrpt_summary_geometry.percent_rotamer_outliers       1.12
_pdbx_vrpt_summary_geometry.clashscore                     15.32
_pdbx_vrpt_summary_geometry.num_H_reduce                   837
_pdbx_vrpt_summary_geometry.num_bonds_RMSZ                 850
_pdbx_vrpt_summary_geometry.bonds_RMSZ                     0.46
_pdbx_vrpt_summary_geometry.num_angles_RMSZ                1160
_pdbx_vrpt_summary_geometry.angles_RMSZ                    0.95
#
_pdbx_vrpt_summary_diffraction.exp_method                x-ray
_pdbx_vrpt_summary_diffraction.ordinal                   1
_pdbx_vrpt_summary_diffraction.bulk_solvent_b            120.009
_pdbx_vrpt_summary_diffraction.Wilson_B_estimate         129.476
_pdbx_vrpt_summary_diffraction.I_over_sigma              1.52(3.32A)
_pdbx_vrpt_summary_diffraction.num_miller_indices        2991
_pdbx_vrpt_summary_diffraction.bulk_solvent_k            0.359
_pdbx_vrpt_summary_diffraction.Padilla_Yeates_L_mean     0.441
_pdbx_vrpt_summary_diffraction.Padilla_Yeates_L2_mean    0.273
_pdbx_vrpt_summary_diffraction.Fo_Fc_correlation         0.902
_pdbx_vrpt_summary_diffraction.DCC_R                     0.2547
_pdbx_vrpt_summary_diffraction.DCC_Rfree                 0.2655
_pdbx_vrpt_summary_diffraction.EDS_R                     0.2548
_pdbx_vrpt_summary_diffraction.EDS_res_high              3.35
_pdbx_vrpt_summary_diffraction.EDS_res_low               44.30
_pdbx_vrpt_summary_diffraction.Wilson_B_aniso            "[131.558,131.558,120.538,0.000,0.000,0.000]"
_pdbx_vrpt_summary_diffraction.data_anisotropy           0.086
_pdbx_vrpt_summary_diffraction.trans_NCS_details         "The largest off-origin peak in the Patterson function is 8.26% of the height of the origin peak. No significant pseudotranslation is detected."
_pdbx_vrpt_summary_diffraction.B_factor_type             FULL
_pdbx_vrpt_summary_diffraction.acentric_outliers         0
_pdbx_vrpt_summary_diffraction.centric_outliers          1
_pdbx_vrpt_summary_diffraction.data_completeness         83.29
_pdbx_vrpt_summary_diffraction.number_reflns_R_free      167
_pdbx_vrpt_summary_diffraction.percent_free_reflections  4.48
_pdbx_vrpt_summary_diffraction.percent_RSRZ_outliers     0.95
_pdbx_vrpt_summary_diffraction.PDB_resolution_high       3.35
_pdbx_vrpt_summary_diffraction.PDB_resolution_low        44.30
_pdbx_vrpt_summary_diffraction.PDB_R                     0.2440
_pdbx_vrpt_summary_diffraction.PDB_Rfree                 0.2721
_pdbx_vrpt_summary_diffraction.density_fitness_version   1.0.12
_pdbx_vrpt_summary_diffraction.CCP4_version              "9.0.006 (Gargrove)"
#
loop_
_pdbx_vrpt_model_instance.id
_pdbx_vrpt_model_instance.PDB_model_num
_pdbx_vrpt_model_instance.entity_id
_pdbx_vrpt_model_instance.label_asym_id
_pdbx_vrpt_model_instance.label_seq_id
_pdbx_vrpt_model_instance.label_comp_id
_pdbx_vrpt_model_instance.auth_asym_id
_pdbx_vrpt_model_instance.auth_seq_id
_pdbx_vrpt_model_instance.label_alt_id
_pdbx_vrpt_model_instance.PDB_ins_code
_pdbx_vrpt_model_instance.count_clashes
_pdbx_vrpt_model_instance.count_mogul_angle_outliers
_pdbx_vrpt_model_instance.count_mogul_torsion_outliers
_pdbx_vrpt_model_instance.ligand_of_interest
  1  1  1  A    2  ALA  A   15  .  ?        ?     ?     ?  ?     
  2  1  1  A    3  GLY  A   16  .  ?        ?     ?     ?  ?     
  3  1  1  A    4  VAL  A   17  .  ?        ?     ?     ?  ?     
  4  1  1  A    5  VAL  A   18  .  ?        ?     ?     ?  ?     
  5  1  1  A    6  ILE  A   19  .  ?        1     ?     ?  ?     
  6  1  1  A    7  THR  A   20  .  ?        ?     ?     ?  ?     
  7  1  1  A    8  ASP  A   21  .  ?        ?     ?     ?  ?     
  8  1  1  A    9  ALA  A   22  .  ?        ?     ?     ?  ?     
  9  1  1  A   10  GLN  A   23  .  ?        2     ?     ?  ?     
 10  1  1  A   11  LEU  A   24  .  ?        ?     ?     ?  ?     
 11  1  1  A   12  PRO  A   25  .  ?        2     ?     ?  ?     
 12  1  1  A   13  ASP  A   26  .  ?        2     ?     ?  ?     
 13  1  1  A   14  TYR  A   27  .  ?        ?     ?     ?  ?     
 14  1  1  A   15  PRO  A   28  .  ?        ?     ?     ?  ?     
 15  1  1  A   16  ILE  A   29  .  ?        2     ?     ?  ?     
 16  1  1  A   17  VAL  A   30  .  ?        1     ?     ?  ?     
 17  1  1  A   18  TYR  A   31  .  ?        ?     ?     ?  ?     
 18  1  1  A   19  CYS  A   32  .  ?        ?     ?     ?  ?     
 19  1  1  A   20  ASN  A   33  .  ?        2     ?     ?  ?     
 20  1  1  A   21  PRO  A   34  .  ?        2     ?     ?  ?     
 21  1  1  A   22  GLY  A   35  .  ?        ?     ?     ?  ?     
 22  1  1  A   23  PHE  A   36  .  ?        ?     ?     ?  ?     
 23  1  1  A   24  VAL  A   37  .  ?        ?     ?     ?  ?     
 24  1  1  A   25  GLN  A   38  .  ?        ?     ?     ?  ?     
 25  1  1  A   26  LEU  A   39  .  ?        1     ?     ?  ?     
 26  1  1  A   27  THR  A   40  .  ?        ?     ?     ?  ?     
 27  1  1  A   28  GLY  A   41  .  ?        ?     ?     ?  ?     
 28  1  1  A   29  TYR  A   42  .  ?        ?     ?     ?  ?     
 29  1  1  A   30  PRO  A   43  .  ?        ?     ?     ?  ?     
 30  1  1  A   31  SER  A   44  .  ?        1     ?     ?  ?     
 31  1  1  A   32  GLU  A   45  .  ?        ?     ?     ?  ?     
 32  1  1  A   33  GLU  A   46  .  ?        ?     ?     ?  ?     
 33  1  1  A   34  VAL  A   47  .  ?        ?     ?     ?  ?     
 34  1  1  A   35  LEU  A   48  .  ?        1     ?     ?  ?     
 35  1  1  A   36  GLY  A   49  .  ?        ?     ?     ?  ?     
 36  1  1  A   37  ARG  A   50  .  ?        ?     ?     ?  ?     
 37  1  1  A   38  ASN  A   51  .  ?        1     ?     ?  ?     
 38  1  1  A   39  CYS  A   52  .  ?        2     ?     ?  ?     
 39  1  1  A   40  ARG  A   53  .  ?        1     ?     ?  ?     
 40  1  1  A   41  PHE  A   54  .  ?        ?     ?     ?  ?     
 41  1  1  A   42  LEU  A   55  .  ?        ?     ?     ?  ?     
 42  1  1  A   43  GLN  A   56  .  ?        ?     ?     ?  ?     
 43  1  1  A   44  GLY  A   57  .  ?        ?     ?     ?  ?     
 44  1  1  A   45  PRO  A   58  .  ?        ?     ?     ?  ?     
 45  1  1  A   46  ALA  A   59  .  ?        ?     ?     ?  ?     
 46  1  1  A   47  THR  A   60  .  ?        ?     ?     ?  ?     
 47  1  1  A   48  ASN  A   61  .  ?        ?     ?     ?  ?     
 48  1  1  A   49  PRO  A   62  .  ?        ?     ?     ?  ?     
 49  1  1  A   50  GLU  A   63  .  ?        ?     ?     ?  ?     
 50  1  1  A   51  THR  A   64  .  ?        ?     ?     ?  ?     
 51  1  1  A   52  VAL  A   65  .  ?        ?     ?     ?  ?     
 52  1  1  A   53  ALA  A   66  .  ?        ?     ?     ?  ?     
 53  1  1  A   54  ARG  A   67  .  ?        1     ?     ?  ?     
 54  1  1  A   55  LEU  A   68  .  ?        ?     ?     ?  ?     
 55  1  1  A   56  ARG  A   69  .  ?        4     ?     ?  ?     
 56  1  1  A   57  ARG  A   70  .  ?        ?     ?     ?  ?     
 57  1  1  A   58  ALA  A   71  .  ?        ?     ?     ?  ?     
 58  1  1  A   59  ILE  A   72  .  ?        2     ?     ?  ?     
 59  1  1  A   60  HIS  A   73  .  ?        ?     ?     ?  ?     
 60  1  1  A   61  GLU  A   74  .  ?        ?     ?     ?  ?     
 61  1  1  A   62  GLY  A   75  .  ?        ?     ?     ?  ?     
 62  1  1  A   63  ARG  A   76  .  ?        ?     ?     ?  ?     
 63  1  1  A   64  PRO  A   77  .  ?        ?     ?     ?  ?     
 64  1  1  A   65  ALA  A   78  .  ?        ?     ?     ?  ?     
 65  1  1  A   66  HIS  A   79  .  ?        ?     ?     ?  ?     
 66  1  1  A   67  VAL  A   80  .  ?        1     ?     ?  ?     
 67  1  1  A   68  LEU  A   81  .  ?        ?     ?     ?  ?     
 68  1  1  A   69  LEU  A   82  .  ?        4     ?     ?  ?     
 69  1  1  A   70  LEU  A   83  .  ?        ?     ?     ?  ?     
 70  1  1  A   71  ASN  A   84  .  ?        ?     ?     ?  ?     
 71  1  1  A   72  TYR  A   85  .  ?        ?     ?     ?  ?     
 72  1  1  A   73  ARG  A   86  .  ?        2     ?     ?  ?     
 73  1  1  A   74  LYS  A   87  .  ?        ?     ?     ?  ?     
 74  1  1  A   75  ASP  A   88  .  ?        1     ?     ?  ?     
 75  1  1  A   76  GLY  A   89  .  ?        ?     ?     ?  ?     
 76  1  1  A   77  GLN  A   90  .  ?        ?     ?     ?  ?     
 77  1  1  A   78  PRO  A   91  .  ?        ?     ?     ?  ?     
 78  1  1  A   79  PHE  A   92  .  ?        ?     ?     ?  ?     
 79  1  1  A   80  TRP  A   93  .  ?        1     ?     ?  ?     
 80  1  1  A   81  ASN  A   94  .  ?        ?     ?     ?  ?     
 81  1  1  A   82  ASP  A   95  .  ?        ?     ?     ?  ?     
 82  1  1  A   83  LEU  A   96  .  ?        ?     ?     ?  ?     
 83  1  1  A   84  ARG  A   97  .  ?        ?     ?     ?  ?     
 84  1  1  A   85  ILE  A   98  .  ?        3     ?     ?  ?     
 85  1  1  A   86  ALA  A   99  .  ?        ?     ?     ?  ?     
 86  1  1  A   87  PRO  A  100  .  ?        ?     ?     ?  ?     
 87  1  1  A   88  VAL  A  101  .  ?        1     ?     ?  ?     
 88  1  1  A   89  ARG  A  102  .  ?        ?     ?     ?  ?     
 89  1  1  A   90  ASP  A  103  .  ?        ?     ?     ?  ?     
 90  1  1  A   91  VAL  A  104  .  ?        ?     ?     ?  ?     
 91  1  1  A   92  GLU  A  105  .  ?        ?     ?     ?  ?     
 92  1  1  A   93  GLY  A  106  .  ?        ?     ?     ?  ?     
 93  1  1  A   94  ARG  A  107  .  ?        ?     ?     ?  ?     
 94  1  1  A   95  LEU  A  108  .  ?        1     ?     ?  ?     
 95  1  1  A   96  THR  A  109  .  ?        ?     ?     ?  ?     
 96  1  1  A   97  HIS  A  110  .  ?        ?     ?     ?  ?     
 97  1  1  A   98  PHE  A  111  .  ?        ?     ?     ?  ?     
 98  1  1  A   99  VAL  A  112  .  ?        ?     ?     ?  ?     
 99  1  1  A  100  GLY  A  113  .  ?        ?     ?     ?  ?     
100  1  1  A  101  ILE  A  114  .  ?        ?     ?     ?  ?     
101  1  1  A  102  GLN  A  115  .  ?        ?     ?     ?  ?     
102  1  1  A  103  SER  A  116  .  ?        ?     ?     ?  ?     
103  1  1  A  104  ASP  A  117  .  ?        ?     ?     ?  ?     
104  1  1  A  105  VAL  A  118  .  ?        1     ?     ?  ?     
105  1  1  A  106  SER  A  119  .  ?        ?     ?     ?  ?     
106  1  2  B    .  FMN  A  201  .  ?        9     1     1  Y     
#
loop_
_pdbx_vrpt_model_instance_geometry.ordinal
_pdbx_vrpt_model_instance_geometry.instance_id
_pdbx_vrpt_model_instance_geometry.rotamer_class
_pdbx_vrpt_model_instance_geometry.phi
_pdbx_vrpt_model_instance_geometry.psi
_pdbx_vrpt_model_instance_geometry.ramachandran_class
_pdbx_vrpt_model_instance_geometry.flippable_sidechain
_pdbx_vrpt_model_instance_geometry.num_H_reduce
_pdbx_vrpt_model_instance_geometry.OWAB
_pdbx_vrpt_model_instance_geometry.num_bonds_RMSZ
_pdbx_vrpt_model_instance_geometry.bonds_RMSZ
_pdbx_vrpt_model_instance_geometry.num_angles_RMSZ
_pdbx_vrpt_model_instance_geometry.angles_RMSZ
_pdbx_vrpt_model_instance_geometry.program_for_bond_angle_geometry
_pdbx_vrpt_model_instance_geometry.average_occupancy
  1    1  ?             ?       ?  ?           ?   4   82.000   5  0.59   7  0.41  molprobity  1.000  
  2    2  ?         -82.0   138.0  Favored     ?   3   64.820   4  0.39   5  1.01  molprobity  1.000  
  3    3  t        -130.9   121.3  Favored     ?   9   59.330   7  0.38  10  0.52  molprobity  1.000  
  4    4  m        -126.7   152.6  Favored     ?   9   64.880   7  0.44  10  0.52  molprobity  1.000  
  5    5  mt       -130.8   112.7  Favored     ?  11   60.740   8  0.46  11  0.70  molprobity  1.000  
  6    6  p        -102.3   140.7  Favored     ?   7   61.710   7  0.43  10  0.86  molprobity  1.000  
  7    7  t0        -75.4   120.7  Favored     ?   4   75.720   8  0.34  11  1.07  molprobity  1.000  
  8    8  ?         -94.7    14.8  Favored     ?   5   74.270   5  0.54   7  0.89  molprobity  1.000  
  9    9  mt0      -104.7   -57.2  Favored     1   8   93.980   9  0.34  12  0.95  molprobity  1.000  
 10   10  mt        -58.2   149.9  Favored     ?  11  103.030   8  0.69  12  0.93  molprobity  1.000  
 11   11  Cg_exo    -70.3   158.8  Favored     ?   7  103.330   8  0.44  11  0.71  molprobity  1.000  
 12   12  t70        84.9   -22.6  Allowed     ?   4  104.320   8  0.33  11  0.97  molprobity  1.000  
 13   13  m-80       63.4    72.0  Allowed     ?   9   82.210  13  0.51  19  0.69  molprobity  1.000  
 14   14  Cg_endo   -72.7   155.0  Favored     ?   7   59.430   8  0.52  11  0.64  molprobity  1.000  
 15   15  mt        -78.9   132.2  Favored     ?  11   60.990   8  0.41  11  0.67  molprobity  1.000  
 16   16  m        -118.8     2.2  Favored     ?   9   73.730   7  0.55  10  1.43  molprobity  1.000  
 17   17  t80      -170.2   139.8  Allowed     ?   9   70.490  13  0.36  18  0.60  molprobity  1.000  
 18   18  p        -147.6   130.9  Favored     ?   5   78.730   6  0.46   8  0.45  molprobity  1.000  
 19   19  p0        -76.6   173.1  Favored     ?   6   75.720   8  0.49  12  1.31  molprobity  1.000  
 20   20  Cg_exo    -62.1   -28.2  Favored     ?   7   86.660   8  0.60  11  0.98  molprobity  1.000  
 21   21  ?         -61.8   -35.6  Favored     ?   3   89.700   4  0.60   5  1.00  molprobity  1.000  
 22   22  t80       -75.6   -23.0  Favored     ?   9   59.740  12  0.39  16  0.73  molprobity  1.000  
 23   23  t         -82.6   -30.3  Favored     ?   9   74.720   7  0.29  10  0.92  molprobity  1.000  
 24   24  mt0       -77.4   -38.7  Favored     ?   8  129.100   9  0.31  12  0.66  molprobity  1.000  
 25   25  tp        -62.2   -68.3  Allowed     ?  11   78.450   8  0.26  11  0.76  molprobity  1.000  
 26   26  p         -73.3   -38.1  Favored     ?   7   76.220   7  0.43  10  1.26  molprobity  1.000  
 27   27  ?          99.0     5.4  Favored     ?   3   81.890   4  0.68   5  1.41  molprobity  1.000  
 28   28  m-80      -95.5   135.2  Favored     ?   9   78.130  13  0.56  19  0.75  molprobity  1.000  
 29   29  Cg_endo   -72.1   158.1  Favored     ?   7   83.960   8  0.46  11  1.14  molprobity  1.000  
 30   30  p         -59.0   -22.7  Favored     ?   5  110.530   6  0.67   8  0.45  molprobity  1.000  
 31   31  pt0       -83.3   -14.6  Favored     ?   6   98.180   9  0.31  12  1.14  molprobity  1.000  
 32   32  mt-10    -107.5    11.0  Favored     ?   6   80.190   9  0.18  12  1.04  molprobity  1.000  
 33   33  t        -115.1   -52.4  Favored     ?   9   65.670   7  0.42  10  1.79  molprobity  1.000  
 34   34  mt        -52.0   125.9  Favored     ?  11   56.620   8  0.28  11  0.58  molprobity  1.000  
 35   35  ?          97.5    -8.3  Favored     ?   3   79.310   4  0.83   5  0.75  molprobity  1.000  
 36   36  mtp180   -108.2   163.0  Favored     ?  13  101.830  11  0.42  14  0.78  molprobity  1.000  
 37   37  t0        -93.1   142.2  Favored     ?   6   65.770   8  0.35  11  0.99  molprobity  1.000  
 38   38  m         -68.1    19.4  OUTLIER     ?   5   91.940   6  0.33   8  0.90  molprobity  1.000  
 39   39  ptp90     -92.9     1.9  Favored     ?  13   73.640  11  0.36  14  1.30  molprobity  1.000  
 40   40  p90       -78.5    -9.3  Favored     ?   9   77.800  12  0.43  16  1.40  molprobity  1.000  
 41   41  mt        -86.4    -3.8  Favored     ?  11   77.240   8  0.39  11  0.85  molprobity  1.000  
 42   42  mt0       -86.1   165.5  Favored     ?   8   74.660   9  0.35  12  0.78  molprobity  1.000  
 43   43  ?        -155.4  -158.9  Favored     ?   3   93.470   4  1.13   6  2.16  molprobity  1.000  
 44   44  Cg_exo    -68.2   -21.9  Favored     ?   7   71.530   8  0.52  11  1.32  molprobity  1.000  
 45   45  ?        -113.9    10.7  Favored     ?   5   64.140   5  0.58   7  0.82  molprobity  1.000  
 46   46  m         -71.0   126.1  Favored     ?   7   66.040   7  0.40  10  0.69  molprobity  1.000  
 47   47  t0        -68.8   116.3  Favored     ?   6   80.760   8  0.70  12  1.49  molprobity  1.000  
 48   48  Cg_exo    -66.8   -20.6  Favored     ?   7   97.330   8  0.50  11  0.94  molprobity  1.000  
 49   49  mt-10     -76.4   -30.9  Favored     ?   6  131.540   9  0.28  12  0.96  molprobity  1.000  
 50   50  m         -74.0   -33.1  Favored     ?   7   87.110   7  0.40  10  1.15  molprobity  1.000  
 51   51  t         -76.2   -37.9  Favored     ?   9   87.080   7  0.32  10  0.99  molprobity  1.000  
 52   52  ?         -66.0   -38.4  Favored     ?   5   95.760   5  0.61   7  0.74  molprobity  1.000  
 53   53  ttp-110   -68.3   -31.0  Favored     ?  13  106.470  11  0.43  14  1.13  molprobity  1.000  
 54   54  tp        -75.8   -33.4  Favored     ?  11   87.570   8  0.37  11  0.88  molprobity  1.000  
 55   55  tmm-80    -79.7   -20.9  Favored     ?  13  118.440  11  0.34  14  0.79  molprobity  1.000  
 56   56  ttm170    -76.6   -42.7  Favored     ?  13  116.730  11  0.45  14  1.11  molprobity  1.000  
 57   57  ?         -63.6   -43.8  Favored     ?   5   84.520   5  0.66   7  0.85  molprobity  1.000  
 58   58  mt        -64.9   -32.7  Favored     ?  11  100.300   8  0.31  11  0.66  molprobity  1.000  
 59   59  t70       -81.1   -18.0  Favored     ?   7  112.360  11  0.52  15  0.61  molprobity  1.000  
 60   60  mt-10    -101.4    -1.7  Favored     ?   6  131.130   9  0.25  12  0.96  molprobity  1.000  
 61   61  ?          62.0    50.5  Favored     ?   3   86.190   4  0.59   5  0.37  molprobity  1.000  
 62   62  mtm110   -129.2   153.9  Favored     ?  13  123.690  11  0.58  15  0.70  molprobity  1.000  
 63   63  Cg_endo   -64.2   162.6  Favored     ?   7   88.750   8  0.44  11  0.91  molprobity  1.000  
 64   64  ?        -147.9   160.0  Favored     ?   5   89.580   5  0.61   7  0.62  molprobity  1.000  
 65   65  t-170    -154.4   106.5  Favored     ?   7   87.800  11  0.55  15  0.44  molprobity  1.000  
 66   66  m        -128.7   172.1  Favored     ?   9   79.530   7  0.21  10  0.68  molprobity  1.000  
 67   67  tp       -134.6    96.2  Favored     ?  11   83.040   8  0.47  11  0.39  molprobity  1.000  
 68   68  pt       -119.7   158.3  Favored     ?  11   69.840   8  0.34  11  0.48  molprobity  1.000  
 69   69  tp        -85.2   127.2  Favored     ?  11   68.700   8  0.39  11  0.53  molprobity  1.000  
 70   70  m110     -116.8  -178.1  Favored     ?   6   71.330   8  0.37  11  0.59  molprobity  1.000  
 71   71  m-80     -142.0   123.3  Favored     ?   9   67.670  13  0.35  18  0.47  molprobity  1.000  
 72   72  mtt-85    -62.4  -175.6  Allowed     ?  13  121.810  11  0.36  14  0.91  molprobity  1.000  
 73   73  tttt      -71.8   -37.1  Favored     ?  13   89.060   9  0.50  11  1.02  molprobity  1.000  
 74   74  p0        -70.6    -9.1  Favored     ?   4   90.170   8  0.42  11  1.26  molprobity  1.000  
 75   75  ?          93.8     5.8  Favored     ?   3   85.940   4  0.83   5  1.17  molprobity  1.000  
 76   76  tt0       -83.4   131.5  Favored     ?   8  134.760   9  0.69  13  0.86  molprobity  1.000  
 77   77  Cg_endo   -81.0   157.3  Favored     ?   7   81.660   8  0.52  11  0.83  molprobity  1.000  
 78   78  p90      -155.8   142.9  Favored     ?   9   70.140  12  0.49  16  1.14  molprobity  1.000  
 79   79  OUTLIER   -65.0   124.7  Favored     ?  10   77.500  16  0.38  23  0.74  molprobity  1.000  
 80   80  t0       -111.2   117.6  Favored     ?   6   62.410   8  0.34  11  0.59  molprobity  1.000  
 81   81  t70       -93.0    80.6  Favored     ?   4   79.800   8  0.37  11  1.25  molprobity  1.000  
 82   82  tp        -78.1   146.1  Favored     ?  11   71.970   8  0.26  11  0.78  molprobity  1.000  
 83   83  ttp-170  -144.6   105.2  Favored     ?  13   84.390  11  0.57  14  1.64  molprobity  1.000  
 84   84  mm        -93.1   148.6  Favored     ?  11   73.940   8  0.33  11  0.52  molprobity  1.000  
 85   85  ?        -154.5   131.3  Favored     ?   5   61.250   5  1.06   8  1.54  molprobity  1.000  
 86   86  Cg_endo   -82.7   136.6  Favored     ?   7   70.530   8  0.51  11  0.83  molprobity  1.000  
 87   87  t        -109.5   135.9  Favored     ?   9   74.670   7  0.46  10  0.46  molprobity  1.000  
 88   88  ttm-80   -126.8   163.6  Favored     ?  13   95.810  11  0.45  14  1.85  molprobity  1.000  
 89   89  p0       -101.6  -146.1  Allowed     ?   4  107.940   8  0.37  11  1.54  molprobity  1.000  
 90   90  t         -84.9   -37.9  Favored     ?   9   85.110   7  0.24  10  1.00  molprobity  1.000  
 91   91  pt0       -98.8    24.0  Favored     ?   6  102.910   9  0.28  12  1.18  molprobity  1.000  
 92   92  ?          65.3    67.7  Allowed     ?   3  107.090   4  0.61   5  0.44  molprobity  1.000  
 93   93  mtp85    -138.6   126.1  Favored     ?  13  110.910  11  0.39  14  0.62  molprobity  1.000  
 94   94  tp        -68.5   124.2  Favored     ?  11   89.280   8  0.34  11  0.66  molprobity  1.000  
 95   95  p        -120.6   -34.9  Favored     ?   7   69.950   7  0.39  10  1.16  molprobity  1.000  
 96   96  m90      -148.8   169.3  Favored     ?   7   71.690  11  0.52  15  0.73  molprobity  1.000  
 97   97  m-80     -130.0   143.2  Favored     ?   9   63.080  12  0.36  16  1.30  molprobity  1.000  
 98   98  t        -111.3   131.0  Favored     ?   9   72.420   7  0.48  10  0.64  molprobity  1.000  
 99   99  ?        -114.5   145.7  Favored     ?   3   80.360   4  0.68   5  0.66  molprobity  1.000  
100  100  mt       -132.1   102.9  Favored     ?  11   80.650   8  0.48  11  0.84  molprobity  1.000  
101  101  mp10      -92.9   139.8  Favored     ?   8   82.630   9  0.32  12  0.69  molprobity  1.000  
102  102  m        -142.0   128.2  Favored     ?   5   86.860   6  0.71   8  0.33  molprobity  1.000  
103  103  t0        -79.8   124.3  Favored     ?   4   88.570   8  0.36  11  1.09  molprobity  1.000  
104  104  m        -129.0    32.4  Allowed     ?   9  112.040   7  0.41  10  0.48  molprobity  1.000  
105  105  m             ?       ?  ?           ?   5  115.890   5  0.75   5  0.97  molprobity  1.000  
106  106  ?             ?       ?  ?           ?  19   69.600  33  0.55  48  0.71  mogul       1.000  
#
loop_
_pdbx_vrpt_instance_clashes.ordinal
_pdbx_vrpt_instance_clashes.instance_id
_pdbx_vrpt_instance_clashes.label_atom_id
_pdbx_vrpt_instance_clashes.cid
_pdbx_vrpt_instance_clashes.clashmag
_pdbx_vrpt_instance_clashes.dist
 1    5  O        1  0.46  2.15  
 2    9  HE21     2  0.42  1.70  
 3    9  HB3      2  0.42  1.70  
 4   11  O        3  0.59  2.02  
 5   11  O        4  0.40  2.67  
 6   12  HB3      3  0.59  2.02  
 7   12  CB       4  0.40  2.67  
 8   15  HD11     5  0.84  2.17  
 9   15  CD1      6  0.53  2.96  
10   16  HG22     1  0.46  2.15  
11   19  HB2      7  0.44  2.47  
12   19  HB2      8  0.43  2.01  
13   20  CD       7  0.44  2.47  
14   20  HD2      8  0.43  2.01  
15   25  O        9  0.53  2.41  
16   30  O       10  0.41  2.20  
17   34  HG      10  0.41  2.20  
18   37  C       11  0.44  2.25  
19   38  SG       5  0.84  2.17  
20   38  SG       6  0.53  2.96  
21   39  H       11  0.44  2.25  
22   53  HH21    12  0.44  1.82  
23   55  HB2     13  0.80  1.64  
24   55  HB2     14  0.50  2.37  
25   55  HG2     15  0.48  2.13  
26   55  O       15  0.48  2.13  
27   58  HD13    16  0.42  2.01  
28   58  CD1     17  0.41  2.51  
29   66  HG12    12  0.44  1.82  
30   68  H       18  0.64  1.63  
31   68  HD23    18  0.64  1.63  
32   68  HD23    19  0.40  2.33  
33   68  N       19  0.40  2.33  
34   72  HB2     20  0.60  2.01  
35   72  NH1      9  0.53  2.41  
36   74  OD1     20  0.60  2.01  
37   79  HB3     21  0.45  1.98  
38   84  HD11    22  0.72  2.19  
39   84  HD11    23  0.56  2.35  
40   84  CD1     24  0.53  2.86  
41   87  O       25  0.53  2.08  
42   94  HD12    25  0.53  2.08  
43  104  HG23    21  0.45  1.98  
44  106  "H5'1"  13  0.80  1.64  
45  106  C7      22  0.72  2.19  
46  106  C7      24  0.53  2.86  
47  106  C6      23  0.56  2.35  
48  106  "C5'"   14  0.50  2.37  
49  106  "O2'"   26  0.45  2.65  
50  106  C9      26  0.45  2.65  
51  106  HM83    16  0.42  2.01  
52  106  H9      17  0.41  2.51  
#
_pdbx_vrpt_instance_mogul_angle_outliers.ordinal      1
_pdbx_vrpt_instance_mogul_angle_outliers.instance_id  106
_pdbx_vrpt_instance_mogul_angle_outliers.atom_1       C4
_pdbx_vrpt_instance_mogul_angle_outliers.atom_2       N3
_pdbx_vrpt_instance_mogul_angle_outliers.atom_3       C2
_pdbx_vrpt_instance_mogul_angle_outliers.obsval       121.80
_pdbx_vrpt_instance_mogul_angle_outliers.mean         125.64
_pdbx_vrpt_instance_mogul_angle_outliers.numobs       66
_pdbx_vrpt_instance_mogul_angle_outliers.stdev        1.85
_pdbx_vrpt_instance_mogul_angle_outliers.Zscore       -2.08
_pdbx_vrpt_instance_mogul_angle_outliers.mindiff      0.64
#
_pdbx_vrpt_instance_mogul_torsion_outliers.ordinal        1
_pdbx_vrpt_instance_mogul_torsion_outliers.instance_id    106
_pdbx_vrpt_instance_mogul_torsion_outliers.atom_1         "C4'"
_pdbx_vrpt_instance_mogul_torsion_outliers.atom_2         "C5'"
_pdbx_vrpt_instance_mogul_torsion_outliers.atom_3         "O5'"
_pdbx_vrpt_instance_mogul_torsion_outliers.atom_4         P
_pdbx_vrpt_instance_mogul_torsion_outliers.obsval         117.04
_pdbx_vrpt_instance_mogul_torsion_outliers.mean           40.65
_pdbx_vrpt_instance_mogul_torsion_outliers.numobs         432
_pdbx_vrpt_instance_mogul_torsion_outliers.stdev          15.81
_pdbx_vrpt_instance_mogul_torsion_outliers.mindiff        0.02
_pdbx_vrpt_instance_mogul_torsion_outliers.local_density  4.63
#
loop_
_pdbx_vrpt_model_instance_density.ordinal
_pdbx_vrpt_model_instance_density.instance_id
_pdbx_vrpt_model_instance_density.natoms_eds
_pdbx_vrpt_model_instance_density.RSRCC
_pdbx_vrpt_model_instance_density.RSR
_pdbx_vrpt_model_instance_density.RSRZ
_pdbx_vrpt_model_instance_density.EDIAm
_pdbx_vrpt_model_instance_density.OPIA
  1    1   5  0.957  0.099  -0.273  0.421  40.000  
  2    2   4  0.976  0.075  -0.685  0.477   0.000  
  3    3   7  0.972  0.105  -0.342  0.446  14.290  
  4    4   7  0.969  0.104  -0.362  0.331  14.290  
  5    5   8  0.939  0.166   0.819  0.199  12.500  
  6    6   7  0.985  0.068  -1.002  0.144  14.290  
  7    7   8  0.927  0.115   0.125  0.357  12.500  
  8    8   5  0.973  0.072  -0.828  0.193  20.000  
  9    9   9  0.877  0.144   0.510  0.160  22.220  
 10   10   8  0.975  0.131   0.075  0.145   0.000  
 11   11   7  0.892  0.177   1.335  0.550  28.570  
 12   12   8  0.912  0.112   0.054  0.492  12.500  
 13   13  12  0.959  0.095  -0.480  0.508   8.330  
 14   14   7  0.954  0.103  -0.226  0.582  28.570  
 15   15   8  0.975  0.088  -0.751  0.471  12.500  
 16   16   7  0.957  0.113  -0.181  0.346   0.000  
 17   17  12  0.953  0.092  -0.546  0.465   8.330  
 18   18   6  0.982  0.054  -1.171  0.663  16.670  
 19   19   8  0.948  0.101  -0.234  0.159  12.500  
 20   20   7  0.900  0.145   0.660  0.350  14.290  
 21   21   4  0.903  0.112   0.085  0.477   0.000  
 22   22  11  0.959  0.100  -0.461  0.486   0.000  
 23   23   7  0.962  0.105  -0.342  0.419   0.000  
 24   24   9  0.801  0.142   0.466  0.059  11.110  
 25   25   8  0.969  0.101  -0.514  0.370  37.500  
 26   26   7  0.977  0.094  -0.424  0.253  14.290  
 27   27   4  0.934  0.096  -0.248  0.526   0.000  
 28   28  12  0.973  0.096  -0.458  0.401   8.330  
 29   29   7  0.962  0.099  -0.310  0.435  28.570  
 30   30   6  0.953  0.112   0.096  0.151   0.000  
 31   31   9  0.864  0.143   0.455  0.314  22.220  
 32   32   9  0.930  0.113  -0.211  0.547  11.110  
 33   33   7  0.969  0.098  -0.483  0.305  28.570  
 34   34   8  0.939  0.125  -0.043  0.411  50.000  
 35   35   4  0.892  0.145   0.773  0.434   0.000  
 36   36  11  0.932  0.166   0.643  0.259   9.090  
 37   37   8  0.931  0.101  -0.234  0.602  25.000  
 38   38   6  0.970  0.097  -0.137  0.348   0.000  
 39   39  11  0.940  0.109  -0.438  0.335   9.090  
 40   40  11  0.952  0.132   0.189  0.184   9.090  
 41   41   8  0.960  0.132   0.094  0.444  12.500  
 42   42   9  0.945  0.107  -0.310  0.370  22.220  
 43   43   4  0.933  0.106  -0.040  0.291   0.000  
 44   44   7  0.953  0.116   0.049  0.589  42.860  
 45   45   5  0.938  0.111  -0.027  0.514  20.000  
 46   46   7  0.941  0.107  -0.136  0.484  28.570  
 47   47   8  0.926  0.097  -0.328  0.498  12.500  
 48   48   7  0.953  0.129   0.323  0.338  14.290  
 49   49   9  0.875  0.173   1.120  0.049  11.110  
 50   50   7  0.917  0.156   0.953  0.246  14.290  
 51   51   7  0.960  0.149   0.543  0.219   0.000  
 52   52   5  0.956  0.095  -0.355  0.326   0.000  
 53   53  11  0.924  0.135   0.055  0.223   0.000  
 54   54   8  0.958  0.164   0.722  0.186   0.000  
 55   55  11  0.858  0.162   0.567  0.232   9.090  
 56   56  11  0.758  0.198   1.250  0.270   9.090  
 57   57   5  0.973  0.112  -0.006  0.311   0.000  
 58   58   8  0.966  0.139   0.276  0.250  12.500  
 59   59  10  0.882  0.114  -0.017  0.326  10.000  
 60   60   9  0.743  0.177   1.208  0.065   0.000  
 61   61   4  0.970  0.114   0.127  0.504  25.000  
 62   62  11  0.930  0.135   0.055  0.100   9.090  
 63   63   7  0.916  0.129   0.323  0.450   0.000  
 64   64   5  0.967  0.105  -0.150  0.320   0.000  
 65   65  10  0.901  0.105  -0.214  0.548  20.000  
 66   66   7  0.962  0.112  -0.201  0.173  28.570  
 67   67   8  0.927  0.167   0.780  0.106  25.000  
 68   68   8  0.954  0.132   0.094  0.363   0.000  
 69   69   8  0.952  0.137   0.192  0.163  12.500  
 70   70   8  0.976  0.084  -0.632  0.446  12.500  
 71   71  12  0.965  0.108  -0.195  0.342   8.330  
 72   72  11  0.919  0.173   0.776  0.097   9.090  
 73   73   9  0.926  0.124  -0.246  0.230  11.110  
 74   74   8  0.863  0.109  -0.017  0.169  25.000  
 75   75   4  0.934  0.102  -0.123  0.541  25.000  
 76   76   9  0.815  0.232   2.461  0.063   0.000  
 77   77   7  0.949  0.166   1.103  0.454   0.000  
 78   78  11  0.944  0.138   0.311  0.397   9.090  
 79   79  14  0.932  0.120   0.098  0.339  14.290  
 80   80   8  0.954  0.095  -0.375  0.416  12.500  
 81   81   8  0.918  0.101  -0.205  0.551  50.000  
 82   82   8  0.965  0.120  -0.141  0.095  12.500  
 83   83  11  0.768  0.231   1.877  0.488   9.090  
 84   84   8  0.939  0.150   0.497  0.425  50.000  
 85   85   5  0.899  0.127   0.302  0.282   0.000  
 86   86   7  0.916  0.134   0.428  0.589  28.570  
 87   87   7  0.982  0.089  -0.664  0.129  14.290  
 88   88  11  0.902  0.154   0.416  0.228   9.090  
 89   89   8  0.948  0.125   0.361  0.402   0.000  
 90   90   7  0.861  0.208   1.730  0.386  28.570  
 91   91   9  0.908  0.117  -0.122  0.442  11.110  
 92   92   4  0.915  0.135   0.565  0.473   0.000  
 93   93  11  0.837  0.134   0.036  0.338  18.180  
 94   94   8  0.971  0.159   0.624  0.171   0.000  
 95   95   7  0.975  0.081  -0.713  0.464   0.000  
 96   96  10  0.980  0.068  -1.020  0.479   0.000  
 97   97  11  0.972  0.107  -0.319  0.389   0.000  
 98   98   7  0.947  0.157   0.704  0.207  28.570  
 99   99   4  0.975  0.095  -0.269  0.230   0.000  
100  100   8  0.955  0.145   0.396  0.191  12.500  
101  101   9  0.950  0.105  -0.355  0.422  11.110  
102  102   6  0.919  0.122   0.330  0.252  33.330  
103  103   8  0.903  0.107  -0.064  0.496  12.500  
104  104   7  0.948  0.146   0.483  0.243   0.000  
105  105   6  0.704  0.167   1.384  0.233   0.000  
106  106  31  0.950  0.090       ?  0.488  12.900  
#
loop_
_pdbx_vrpt_software.ordinal
_pdbx_vrpt_software.name
_pdbx_vrpt_software.version
_pdbx_vrpt_software.success_y_or_n
1  molprobity           "4-5-2 with Phenix2.0rc1"                                             Y  
2  mogul                "1.8.5 (274361), CSD as541be (2020)"                                  Y  
3  buster-report        "1.1.7 (2018)"                                                        Y  
4  eds                  3.0                                                                   Y  
5  dcc                  '"2.31  (2025-03-10))"'                                               Y  
6  xtriage              2.0rc1                                                                Y  
7  percentiles          "20231227.v01 (using entries in the PDB archive December 27th 2023)"  Y  
8  validation-pipeline  2.44                                                                  Y  
##
