data_9N31

_audit_conform.dict_name      mmcif_pdbx_vrpt.dic
_audit_conform.dict_version   0.068
_audit_conform.dict_location  https://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx_vrpt.dic
#
_pdbx_vrpt_database.id    PDB
_pdbx_vrpt_database.code  9N31
#
_pdbx_vrpt_exptl.ordinal  1
_pdbx_vrpt_exptl.method   x-ray
#
_pdbx_vrpt_summary.entry_id                    9N31
_pdbx_vrpt_summary.PDB_deposition_date         2025-01-29
_pdbx_vrpt_summary.PDB_revision_number         1
_pdbx_vrpt_summary.PDB_revision_date           2025-03-26
_pdbx_vrpt_summary.report_creation_date        2025-03-15:18:12
_pdbx_vrpt_summary.attempted_validation_steps  molprobity,validation-pack,xtriage,eds_mogul,validation_schema,percentiles,writexml,writecif,writepdf
_pdbx_vrpt_summary.ligands_for_buster_report   N
#
loop_
_pdbx_vrpt_entity.id
_pdbx_vrpt_entity.type
_pdbx_vrpt_entity.description
1  polymer  QVGGVV  
2  water    water   
#
loop_
_pdbx_vrpt_asym.label_asym_id
_pdbx_vrpt_asym.entity_id
A  1  
B  2  
#
loop_
_pdbx_vrpt_percentile_list.id
_pdbx_vrpt_percentile_list.range
_pdbx_vrpt_percentile_list.exp_method
1  all    x-ray  
2  1.102  x-ray  
#
loop_
_pdbx_vrpt_percentile_type.id
_pdbx_vrpt_percentile_type.type
1  all_atom_clashscore           
2  Ramachandran_outlier_percent  
3  rotamer_outliers_percent      
4  RSRZ_outliers_percent         
5  R_value_R_free                
#
loop_
_pdbx_vrpt_percentile_conditions.id
_pdbx_vrpt_percentile_conditions.percentile_list_id
_pdbx_vrpt_percentile_conditions.type_id
_pdbx_vrpt_percentile_conditions.rank
_pdbx_vrpt_percentile_conditions.number_entries_total
_pdbx_vrpt_percentile_conditions.res_high
_pdbx_vrpt_percentile_conditions.res_low
 1  1  1   99.96  180529     ?     ?  
 2  2  1  100.00    1561  1.08  1.12  
 3  1  2  100.00  177936     ?     ?  
 4  2  2  100.00    1524  1.08  1.12  
 5  1  3  100.00  177891     ?     ?  
 6  2  3  100.00    1520  1.08  1.12  
 7  1  4  100.00  164620     ?     ?  
 8  2  4  100.00    1365  1.08  1.12  
 9  1  5   89.55  164625     ?     ?  
10  2  5   22.39    1365  1.08  1.12  
#
loop_
_pdbx_vrpt_percentile_entity_view.ordinal
_pdbx_vrpt_percentile_entity_view.conditions_id
_pdbx_vrpt_percentile_entity_view.type_id
_pdbx_vrpt_percentile_entity_view.label_asym_id
_pdbx_vrpt_percentile_entity_view.PDB_model_num
_pdbx_vrpt_percentile_entity_view.entity_id
_pdbx_vrpt_percentile_entity_view.auth_asym_id
_pdbx_vrpt_percentile_entity_view.rank
1  3  2  A  1  1  A  100.00  
2  4  2  A  1  1  A  100.00  
3  5  3  A  1  1  A  100.00  
4  6  3  A  1  1  A  100.00  
5  7  4  A  1  1  A  100.00  
6  8  4  A  1  1  A  100.00  
#
_pdbx_vrpt_summary_entity_geometry.ordinal          1
_pdbx_vrpt_summary_entity_geometry.PDB_model_num    1
_pdbx_vrpt_summary_entity_geometry.entity_id        1
_pdbx_vrpt_summary_entity_geometry.label_asym_id    A
_pdbx_vrpt_summary_entity_geometry.auth_asym_id     A
_pdbx_vrpt_summary_entity_geometry.angles_RMSZ      0.83
_pdbx_vrpt_summary_entity_geometry.bonds_RMSZ       0.73
_pdbx_vrpt_summary_entity_geometry.num_bonds_RMSZ   38
_pdbx_vrpt_summary_entity_geometry.num_angles_RMSZ  49
#
_pdbx_vrpt_summary_geometry.ordinal                        1
_pdbx_vrpt_summary_geometry.percent_ramachandran_outliers  0.00
_pdbx_vrpt_summary_geometry.percent_rotamer_outliers       0.00
_pdbx_vrpt_summary_geometry.clashscore                     0.00
_pdbx_vrpt_summary_geometry.num_H_reduce                   43
_pdbx_vrpt_summary_geometry.num_bonds_RMSZ                 38
_pdbx_vrpt_summary_geometry.bonds_RMSZ                     0.73
_pdbx_vrpt_summary_geometry.num_angles_RMSZ                49
_pdbx_vrpt_summary_geometry.angles_RMSZ                    0.83
#
_pdbx_vrpt_summary_diffraction.exp_method                x-ray
_pdbx_vrpt_summary_diffraction.ordinal                   1
_pdbx_vrpt_summary_diffraction.bulk_solvent_b            157.111
_pdbx_vrpt_summary_diffraction.bulk_solvent_k            0.000
_pdbx_vrpt_summary_diffraction.Fo_Fc_correlation         0.975
_pdbx_vrpt_summary_diffraction.DCC_R                     0.1632
_pdbx_vrpt_summary_diffraction.DCC_Rfree                 0.1886
_pdbx_vrpt_summary_diffraction.EDS_R                     0.1645
_pdbx_vrpt_summary_diffraction.EDS_res_high              1.10
_pdbx_vrpt_summary_diffraction.EDS_res_low               23.48
_pdbx_vrpt_summary_diffraction.B_factor_type             FULL
_pdbx_vrpt_summary_diffraction.data_completeness         89.39
_pdbx_vrpt_summary_diffraction.number_reflns_R_free      225
_pdbx_vrpt_summary_diffraction.percent_free_reflections  10.04
_pdbx_vrpt_summary_diffraction.percent_RSRZ_outliers     0.00
_pdbx_vrpt_summary_diffraction.PDB_resolution_high       1.10
_pdbx_vrpt_summary_diffraction.PDB_resolution_low        23.48
_pdbx_vrpt_summary_diffraction.PDB_R                     0.1600
_pdbx_vrpt_summary_diffraction.PDB_Rfree                 0.1844
_pdbx_vrpt_summary_diffraction.density_fitness_version   1.0.11
_pdbx_vrpt_summary_diffraction.CCP4_version              "9.0.004 (Gargrove)"
#
loop_
_pdbx_vrpt_model_instance.id
_pdbx_vrpt_model_instance.PDB_model_num
_pdbx_vrpt_model_instance.entity_id
_pdbx_vrpt_model_instance.label_asym_id
_pdbx_vrpt_model_instance.label_seq_id
_pdbx_vrpt_model_instance.label_comp_id
_pdbx_vrpt_model_instance.auth_asym_id
_pdbx_vrpt_model_instance.auth_seq_id
_pdbx_vrpt_model_instance.label_alt_id
_pdbx_vrpt_model_instance.PDB_ins_code
 1  1  1  A  1  GLN  A    1  .  ?     
 2  1  1  A  2  VAL  A    2  .  ?     
 3  1  1  A  3  GLY  A    3  .  ?     
 4  1  1  A  4  GLY  A    4  .  ?     
 5  1  1  A  5  VAL  A    5  .  ?     
 6  1  1  A  6  VAL  A    6  .  ?     
 7  1  2  B  .  HOH  A  101  .  ?     
 8  1  2  B  .  HOH  A  102  .  ?     
 9  1  2  B  .  HOH  A  103  .  ?     
10  1  2  B  .  HOH  A  104  .  ?     
#
loop_
_pdbx_vrpt_model_instance_geometry.ordinal
_pdbx_vrpt_model_instance_geometry.instance_id
_pdbx_vrpt_model_instance_geometry.rotamer_class
_pdbx_vrpt_model_instance_geometry.phi
_pdbx_vrpt_model_instance_geometry.psi
_pdbx_vrpt_model_instance_geometry.ramachandran_class
_pdbx_vrpt_model_instance_geometry.num_H_reduce
_pdbx_vrpt_model_instance_geometry.OWAB
_pdbx_vrpt_model_instance_geometry.num_bonds_RMSZ
_pdbx_vrpt_model_instance_geometry.bonds_RMSZ
_pdbx_vrpt_model_instance_geometry.num_angles_RMSZ
_pdbx_vrpt_model_instance_geometry.angles_RMSZ
_pdbx_vrpt_model_instance_geometry.program_for_bond_angle_geometry
_pdbx_vrpt_model_instance_geometry.average_occupancy
 1   1  mt-30       ?      ?  ?          10   8.120     9  0.63    12  0.74  molprobity  1.000  
 2   2  t      -128.0  135.8  Favored     9   6.660     7  0.37    10  0.73  molprobity  1.000  
 3   3  ?       -66.8  149.0  Favored     3   5.790     4  0.76     5  0.69  molprobity  1.000  
 4   4  ?       -70.4  175.3  Favored     3   5.660     4  0.35     5  0.63  molprobity  1.000  
 5   5  m      -120.3  152.8  Favored     9   8.250     7  0.29    10  0.98  molprobity  1.000  
 6   6  m           ?      ?  ?           9  10.320     7  1.34     7  1.07  molprobity  1.000  
 7   7  ?           ?      ?  ?           ?   8.950     ?     ?     ?     ?  ?           1.000  
 8   8  ?           ?      ?  ?           ?   6.980     ?     ?     ?     ?  ?           0.500  
 9   9  ?           ?      ?  ?           ?   7.630     ?     ?     ?     ?  ?           1.000  
10  10  ?           ?      ?  ?           ?   9.670     ?     ?     ?     ?  ?           1.000  
#
loop_
_pdbx_vrpt_model_instance_density.ordinal
_pdbx_vrpt_model_instance_density.instance_id
_pdbx_vrpt_model_instance_density.natoms_eds
_pdbx_vrpt_model_instance_density.RSRCC
_pdbx_vrpt_model_instance_density.RSR
_pdbx_vrpt_model_instance_density.RSRZ
_pdbx_vrpt_model_instance_density.EDIAm
_pdbx_vrpt_model_instance_density.OPIA
 1   1  19  0.977  0.043  -0.584  0.831   66.670  
 2   2  16  0.971  0.048  -0.063  0.808   71.430  
 3   3   7  0.983  0.036  -0.426  0.852   75.000  
 4   4   7  0.990  0.027  -0.721  0.878   75.000  
 5   5  16  0.968  0.056   0.296  0.807   71.430  
 6   6  17  0.964  0.059   0.430  0.758   71.430  
 7   7   1  0.984  0.131       ?  0.681    0.000  
 8   8   1  0.917  0.175       ?  0.491    0.000  
 9   9   1  0.986  0.033       ?  0.873  100.000  
10  10   1  0.974  0.046       ?  0.970  100.000  
#
loop_
_pdbx_vrpt_software.ordinal
_pdbx_vrpt_software.name
_pdbx_vrpt_software.version
_pdbx_vrpt_software.success_y_or_n
1  molprobity   4.02b-467                                                             Y  
2  eds          3.0                                                                   Y  
3  dcc          '"2.29  (2024-07-11))"'                                               Y  
4  xtriage      1.21                                                                  N  
5  percentiles  "20231227.v01 (using entries in the PDB archive December 27th 2023)"  Y  
##
