data_8XZO

_pdbx_vrpt_database.id    PDB
_pdbx_vrpt_database.code  8XZO
#
_pdbx_vrpt_exptl.ordinal  1
_pdbx_vrpt_exptl.method   x-ray
#
_pdbx_vrpt_summary.entry_id                    8XZO
_pdbx_vrpt_summary.PDB_deposition_date         2024-01-21
_pdbx_vrpt_summary.PDB_revision_number         1
_pdbx_vrpt_summary.PDB_revision_date           2024-07-24
_pdbx_vrpt_summary.RNA_suiteness               0.71
_pdbx_vrpt_summary.report_creation_date        2024-07-16:05:11
_pdbx_vrpt_summary.attempted_validation_steps  molprobity,validation-pack,xtriage,eds,mogul,buster-report,percentiles,writexml,writecif,writepdf
_pdbx_vrpt_summary.ligands_for_buster_report   Y
#
loop_
_pdbx_vrpt_entity.id
_pdbx_vrpt_entity.type
_pdbx_vrpt_entity.description
1  polymer      "RNA (53-MER)"  
2  non-polymer  SPERMINE  
3  non-polymer  GUANINE  
4  non-polymer  "MAGNESIUM ION"  
5  water        water  
#
loop_
_pdbx_vrpt_asym.label_asym_id
_pdbx_vrpt_asym.entity_id
A  1  
B  2  
C  3  
D  4  
E  4  
F  4  
G  4  
H  5  
#
loop_
_pdbx_vrpt_percentile_list.id
_pdbx_vrpt_percentile_list.range
_pdbx_vrpt_percentile_list.exp_method
1  all   x-ray  
2  1.97  x-ray  
#
loop_
_pdbx_vrpt_percentile_type.id
_pdbx_vrpt_percentile_type.type
1  all_atom_clashscore    
2  RSRZ_outliers_percent  
3  R_value_R_free         
4  RNAsuiteness_percent   
#
loop_
_pdbx_vrpt_percentile_conditions.id
_pdbx_vrpt_percentile_conditions.percentile_list_id
_pdbx_vrpt_percentile_conditions.type_id
_pdbx_vrpt_percentile_conditions.rank
_pdbx_vrpt_percentile_conditions.number_entries_total
_pdbx_vrpt_percentile_conditions.res_high
_pdbx_vrpt_percentile_conditions.res_low
1  1  1  95.53  141614     ?     ?  
2  2  1  96.45    1014  1.98  1.98  
3  1  2  66.49  127900     ?     ?  
4  2  2  67.94   11410  1.96  2.00  
5  1  3  46.99  130704     ?     ?  
6  2  3  43.51   11647  1.96  2.00  
7  1  4  85.65    3102     ?     ?  
8  2  4  76.02    1105  1.46  2.50  
#
loop_
_pdbx_vrpt_percentile_entity_view.ordinal
_pdbx_vrpt_percentile_entity_view.conditions_id
_pdbx_vrpt_percentile_entity_view.type_id
_pdbx_vrpt_percentile_entity_view.label_asym_id
_pdbx_vrpt_percentile_entity_view.PDB_model_num
_pdbx_vrpt_percentile_entity_view.entity_id
_pdbx_vrpt_percentile_entity_view.auth_asym_id
_pdbx_vrpt_percentile_entity_view.rank
1  3  2  A  1  1  A  66.49  
2  4  2  A  1  1  A  67.94  
#
_pdbx_vrpt_summary_entity_geometry.ordinal          1
_pdbx_vrpt_summary_entity_geometry.PDB_model_num    1
_pdbx_vrpt_summary_entity_geometry.entity_id        1
_pdbx_vrpt_summary_entity_geometry.label_asym_id    A
_pdbx_vrpt_summary_entity_geometry.auth_asym_id     A
_pdbx_vrpt_summary_entity_geometry.angles_RMSZ      0.91
_pdbx_vrpt_summary_entity_geometry.bonds_RMSZ       0.51
_pdbx_vrpt_summary_entity_geometry.num_bonds_RMSZ   1231
_pdbx_vrpt_summary_entity_geometry.num_angles_RMSZ  1916
#
_pdbx_vrpt_summary_geometry.ordinal          1
_pdbx_vrpt_summary_geometry.clashscore       1.13
_pdbx_vrpt_summary_geometry.num_H_reduce     602
_pdbx_vrpt_summary_geometry.num_bonds_RMSZ   1231
_pdbx_vrpt_summary_geometry.bonds_RMSZ       0.51
_pdbx_vrpt_summary_geometry.num_angles_RMSZ  1916
_pdbx_vrpt_summary_geometry.angles_RMSZ      0.91
#
_pdbx_vrpt_summary_diffraction.exp_method                x-ray
_pdbx_vrpt_summary_diffraction.ordinal                   1
_pdbx_vrpt_summary_diffraction.Babinet_b                 74.187
_pdbx_vrpt_summary_diffraction.bulk_solvent_b            35.189
_pdbx_vrpt_summary_diffraction.Wilson_B_estimate         46.692
_pdbx_vrpt_summary_diffraction.I_over_sigma              3.10(1.96A)
_pdbx_vrpt_summary_diffraction.num_miller_indices        12267
_pdbx_vrpt_summary_diffraction.Babinet_k                 0.492
_pdbx_vrpt_summary_diffraction.bulk_solvent_k            0.302
_pdbx_vrpt_summary_diffraction.Padilla_Yeates_L_mean     0.502
_pdbx_vrpt_summary_diffraction.Padilla_Yeates_L2_mean    0.339
_pdbx_vrpt_summary_diffraction.Fo_Fc_correlation         0.960
_pdbx_vrpt_summary_diffraction.DCC_R                     0.21
_pdbx_vrpt_summary_diffraction.DCC_Rfree                 0.24
_pdbx_vrpt_summary_diffraction.EDS_R                     0.23
_pdbx_vrpt_summary_diffraction.EDS_res_high              1.97
_pdbx_vrpt_summary_diffraction.EDS_res_low               26.23
_pdbx_vrpt_summary_diffraction.Wilson_B_aniso            "[46.304,49.692,43.426,0.000,0.000,0.000]"
_pdbx_vrpt_summary_diffraction.data_anisotropy           0.135
_pdbx_vrpt_summary_diffraction.trans_NCS_details         "The largest off-origin peak in the Patterson function is 11.08% of the height of the origin peak. No significant pseudotranslation is detected."
_pdbx_vrpt_summary_diffraction.B_factor_type             FULL
_pdbx_vrpt_summary_diffraction.acentric_outliers         1
_pdbx_vrpt_summary_diffraction.centric_outliers          0
_pdbx_vrpt_summary_diffraction.data_completeness         91.46
_pdbx_vrpt_summary_diffraction.number_reflns_R_free      1214
_pdbx_vrpt_summary_diffraction.percent_free_reflections  9.90
_pdbx_vrpt_summary_diffraction.percent_RSRZ_outliers     1.92
_pdbx_vrpt_summary_diffraction.PDB_resolution_high       1.97
_pdbx_vrpt_summary_diffraction.PDB_resolution_low        26.23
_pdbx_vrpt_summary_diffraction.PDB_R                     0.21
_pdbx_vrpt_summary_diffraction.PDB_Rfree                 0.24
#
loop_
_pdbx_vrpt_model_instance.id
_pdbx_vrpt_model_instance.PDB_model_num
_pdbx_vrpt_model_instance.entity_id
_pdbx_vrpt_model_instance.label_asym_id
_pdbx_vrpt_model_instance.label_seq_id
_pdbx_vrpt_model_instance.label_comp_id
_pdbx_vrpt_model_instance.auth_asym_id
_pdbx_vrpt_model_instance.auth_seq_id
_pdbx_vrpt_model_instance.label_alt_id
_pdbx_vrpt_model_instance.PDB_ins_code
_pdbx_vrpt_model_instance.count_clashes
_pdbx_vrpt_model_instance.count_mogul_bond_outliers
_pdbx_vrpt_model_instance.count_mogul_angle_outliers
_pdbx_vrpt_model_instance.count_mogul_torsion_outliers
_pdbx_vrpt_model_instance.ligand_of_interest
 1  1  1  A   1  GTP  A    1  .  ?        ?     ?     ?     ?  ?     
 2  1  1  A   2  G    A    2  .  ?        ?     ?     ?     ?  ?     
 3  1  1  A   3  G    A    3  .  ?        ?     ?     ?     ?  ?     
 4  1  1  A   4  U    A    4  .  ?        ?     ?     ?     ?  ?     
 5  1  1  A   5  G    A    5  .  ?        ?     ?     ?     ?  ?     
 6  1  1  A   6  U    A    6  .  ?        ?     ?     ?     ?  ?     
 7  1  1  A   7  G    A    7  .  ?        ?     ?     ?     ?  ?     
 8  1  1  A   8  U    A    8  .  ?        ?     ?     ?     ?  ?     
 9  1  1  A   9  A    A    9  .  ?        ?     ?     ?     ?  ?     
10  1  1  A  10  C    A   10  .  ?        ?     ?     ?     ?  ?     
11  1  1  A  11  C    A   11  .  ?        ?     ?     ?     ?  ?     
12  1  1  A  12  G    A   12  .  ?        ?     ?     ?     ?  ?     
13  1  1  A  13  U    A   13  .  ?        ?     ?     ?     ?  ?     
14  1  1  A  14  U    A   14  .  ?        ?     ?     ?     ?  ?     
15  1  1  A  15  C    A   15  .  ?        ?     ?     ?     ?  ?     
16  1  1  A  16  A    A   16  .  ?        ?     ?     ?     ?  ?     
17  1  1  A  17  A    A   17  .  ?        ?     ?     ?     ?  ?     
18  1  1  A  18  C    A   18  .  ?        ?     ?     ?     ?  ?     
19  1  1  A  19  U    A   19  .  ?        ?     ?     ?     ?  ?     
20  1  1  A  20  C    A   20  .  ?        ?     ?     ?     ?  ?     
21  1  1  A  21  G    A   21  .  ?        ?     ?     ?     ?  ?     
22  1  1  A  22  U    A   22  .  ?        ?     ?     ?     ?  ?     
23  1  1  A  23  C    A   23  .  ?        ?     ?     ?     ?  ?     
24  1  1  A  24  C    A   24  .  ?        ?     ?     ?     ?  ?     
25  1  1  A  25  C    A   25  .  ?        ?     ?     ?     ?  ?     
26  1  1  A  26  A    A   26  .  ?        ?     ?     ?     ?  ?     
27  1  1  A  27  G    A   27  .  ?        ?     ?     ?     ?  ?     
28  1  1  A  28  C    A   28  .  ?        ?     ?     ?     ?  ?     
29  1  1  A  29  U    A   29  .  ?        ?     ?     ?     ?  ?     
30  1  1  A  30  U    A   30  .  ?        ?     ?     ?     ?  ?     
31  1  1  A  31  C    A   31  .  ?        ?     ?     ?     ?  ?     
32  1  1  A  32  G    A   32  .  ?        1     ?     ?     ?  ?     
33  1  1  A  33  A    A   33  .  ?        ?     ?     ?     ?  ?     
34  1  1  A  34  C    A   34  .  ?        ?     ?     ?     ?  ?     
35  1  1  A  35  U    A   35  .  ?        ?     ?     ?     ?  ?     
36  1  1  A  36  G    A   36  .  ?        ?     ?     ?     ?  ?     
37  1  1  A  37  G    A   37  .  ?        ?     ?     ?     ?  ?     
38  1  1  A  38  G    A   38  .  ?        ?     ?     ?     ?  ?     
39  1  1  A  39  A    A   39  .  ?        ?     ?     ?     ?  ?     
40  1  1  A  40  C    A   40  .  ?        ?     ?     ?     ?  ?     
41  1  1  A  41  U    A   41  .  ?        ?     ?     ?     ?  ?     
42  1  1  A  42  A    A   42  .  ?        ?     ?     ?     ?  ?     
43  1  1  A  43  C    A   43  .  ?        ?     ?     ?     ?  ?     
44  1  1  A  44  G    A   44  .  ?        ?     ?     ?     ?  ?     
45  1  1  A  45  G    A   45  .  ?        ?     ?     ?     ?  ?     
46  1  1  A  46  G    A   46  .  ?        ?     ?     ?     ?  ?     
47  1  1  A  47  A    A   47  .  ?        ?     ?     ?     ?  ?     
48  1  1  A  48  G    A   48  .  ?        ?     ?     ?     ?  ?     
49  1  1  A  49  C    A   49  .  ?        ?     ?     ?     ?  ?     
50  1  1  A  50  G    A   50  .  ?        ?     ?     ?     ?  ?     
51  1  1  A  51  C    A   51  .  ?        ?     ?     ?     ?  ?     
52  1  1  A  52  C    A   52  .  ?        ?     ?     ?     ?  ?     
53  1  1  A  53  U    A   53  .  ?        1     ?     ?     ?  ?     
54  1  2  B   .  SPM  A  201  .  ?        1     ?     ?     3  ?     
55  1  3  C   .  GUN  A  202  .  ?        ?     1     3     ?  Y     
56  1  4  D   .  MG   A  203  .  ?        ?     ?     ?     ?  ?     
57  1  4  E   .  MG   A  204  .  ?        ?     ?     ?     ?  ?     
58  1  4  F   .  MG   A  205  .  ?        ?     ?     ?     ?  ?     
59  1  4  G   .  MG   A  206  .  ?        ?     ?     ?     ?  ?     
60  1  5  H   .  HOH  A  301  .  ?        1     ?     ?     ?  ?     
61  1  5  H   .  HOH  A  302  .  ?        ?     ?     ?     ?  ?     
62  1  5  H   .  HOH  A  303  .  ?        ?     ?     ?     ?  ?     
63  1  5  H   .  HOH  A  304  .  ?        ?     ?     ?     ?  ?     
64  1  5  H   .  HOH  A  305  .  ?        ?     ?     ?     ?  ?     
65  1  5  H   .  HOH  A  306  .  ?        ?     ?     ?     ?  ?     
66  1  5  H   .  HOH  A  307  .  ?        ?     ?     ?     ?  ?     
67  1  5  H   .  HOH  A  308  .  ?        ?     ?     ?     ?  ?     
68  1  5  H   .  HOH  A  309  .  ?        ?     ?     ?     ?  ?     
69  1  5  H   .  HOH  A  310  .  ?        ?     ?     ?     ?  ?     
70  1  5  H   .  HOH  A  311  .  ?        ?     ?     ?     ?  ?     
71  1  5  H   .  HOH  A  312  .  ?        ?     ?     ?     ?  ?     
72  1  5  H   .  HOH  A  313  .  ?        ?     ?     ?     ?  ?     
73  1  5  H   .  HOH  A  314  .  ?        ?     ?     ?     ?  ?     
74  1  5  H   .  HOH  A  315  .  ?        ?     ?     ?     ?  ?     
75  1  5  H   .  HOH  A  316  .  ?        ?     ?     ?     ?  ?     
76  1  5  H   .  HOH  A  317  .  ?        ?     ?     ?     ?  ?     
77  1  5  H   .  HOH  A  318  .  ?        ?     ?     ?     ?  ?     
78  1  5  H   .  HOH  A  319  .  ?        ?     ?     ?     ?  ?     
79  1  5  H   .  HOH  A  320  .  ?        ?     ?     ?     ?  ?     
80  1  5  H   .  HOH  A  321  .  ?        ?     ?     ?     ?  ?     
81  1  5  H   .  HOH  A  322  .  ?        ?     ?     ?     ?  ?     
82  1  5  H   .  HOH  A  323  .  ?        ?     ?     ?     ?  ?     
83  1  5  H   .  HOH  A  324  .  ?        ?     ?     ?     ?  ?     
#
loop_
_pdbx_vrpt_model_instance_geometry.ordinal
_pdbx_vrpt_model_instance_geometry.instance_id
_pdbx_vrpt_model_instance_geometry.RNA_score
_pdbx_vrpt_model_instance_geometry.RNA_suite
_pdbx_vrpt_model_instance_geometry.num_H_reduce
_pdbx_vrpt_model_instance_geometry.OWAB
_pdbx_vrpt_model_instance_geometry.num_bonds_RMSZ
_pdbx_vrpt_model_instance_geometry.bonds_RMSZ
_pdbx_vrpt_model_instance_geometry.num_angles_RMSZ
_pdbx_vrpt_model_instance_geometry.angles_RMSZ
_pdbx_vrpt_model_instance_geometry.program_for_bond_angle_geometry
_pdbx_vrpt_model_instance_geometry.average_occupancy
 1   1     ?  ?                    11  90.930     ?     ?     ?     ?  ?           1.000  
 2   2  0.00  NotAvailable         11  63.990    26  0.41    41  0.70  molprobity  1.000  
 3   3  0.96  Rotameric            11  54.610    26  0.35    41  0.80  molprobity  1.000  
 4   4  0.88  Rotameric            10  48.660    22  0.34    34  0.69  molprobity  1.000  
 5   5  0.87  Rotameric            11  41.750    26  0.52    41  0.87  molprobity  1.000  
 6   6  0.94  Rotameric            10  39.160    22  0.42    34  0.79  molprobity  1.000  
 7   7  0.87  Rotameric            11  39.720    26  0.65    41  1.10  molprobity  1.000  
 8   8  0.46  Rotameric            10  45.170    22  0.45    34  0.88  molprobity  1.000  
 9   9  0.93  Rotameric            11  50.600    25  0.31    39  0.78  molprobity  1.000  
10  10  0.39  Rotameric            11  53.430    22  0.38    34  1.08  molprobity  1.000  
11  11  0.52  Rotameric            11  50.880    22  0.47    34  1.25  molprobity  1.000  
12  12  0.74  Rotameric            11  43.660    26  0.46    41  0.73  molprobity  1.000  
13  13  0.90  Rotameric            10  41.710    22  0.47    34  0.85  molprobity  1.000  
14  14  0.04  Rotameric            10  48.680    22  0.39    34  0.72  molprobity  1.000  
15  15  0.02  Rotameric            11  88.850    22  0.52    34  0.62  molprobity  1.000  
16  16  0.00  Triaged/NotBinned    11  50.330    25  0.47    39  0.84  molprobity  1.000  
17  17  0.81  Rotameric            11  44.920    25  0.39    39  0.54  molprobity  1.000  
18  18  0.58  Rotameric            11  39.030    22  0.61    34  1.23  molprobity  1.000  
19  19  0.45  Rotameric            10  41.920    22  0.42    34  0.73  molprobity  1.000  
20  20  0.00  NonRotameric         11  40.590    22  0.43    34  0.69  molprobity  1.000  
21  21  0.47  Rotameric            11  35.560    26  0.52    41  0.98  molprobity  1.000  
22  22  0.93  Rotameric            10  35.680    22  0.73    34  1.08  molprobity  1.000  
23  23  0.89  Rotameric            11  41.310    22  0.67    34  1.10  molprobity  1.000  
24  24  0.93  Rotameric            11  49.880    22  0.41    34  0.97  molprobity  1.000  
25  25  0.80  Rotameric            11  52.250    22  0.54    34  0.96  molprobity  1.000  
26  26  0.61  Rotameric            11  47.550    25  0.46    39  0.84  molprobity  1.000  
27  27  0.79  Rotameric            11  43.600    26  0.48    41  0.83  molprobity  1.000  
28  28  0.87  Rotameric            11  41.900    22  0.48    34  0.92  molprobity  1.000  
29  29  0.60  Rotameric            10  40.390    22  0.65    34  1.12  molprobity  1.000  
30  30  0.77  Rotameric            10  45.500    22  0.43    34  0.78  molprobity  1.000  
31  31  0.87  Rotameric            11  42.860    22  0.42    34  0.62  molprobity  1.000  
32  32  0.25  Rotameric            11  43.240    26  0.51    41  0.92  molprobity  1.000  
33  33  0.00  NonRotameric         11  43.920    25  1.00    39  1.21  molprobity  1.000  
34  34  0.35  Rotameric            11  45.850    22  0.42    34  0.91  molprobity  1.000  
35  35  0.75  Rotameric            10  50.040    22  0.43    34  0.88  molprobity  1.000  
36  36  0.93  Rotameric            11  52.260    26  0.45    41  0.90  molprobity  1.000  
37  37  0.87  Rotameric            11  51.860    26  0.33    41  0.87  molprobity  1.000  
38  38  0.81  Rotameric            11  49.350    26  0.45    41  0.77  molprobity  1.000  
39  39  0.97  Rotameric            11  45.710    25  0.48    39  0.61  molprobity  1.000  
40  40  0.93  Rotameric            11  41.800    22  0.52    34  1.02  molprobity  1.000  
41  41  0.86  Rotameric            10  39.780    22  0.60    34  1.13  molprobity  1.000  
42  42  0.77  Rotameric            11  38.060    25  0.78    39  0.68  molprobity  1.000  
43  43  0.80  Rotameric            11  38.160    22  0.48    34  0.94  molprobity  1.000  
44  44  0.85  Rotameric            11  39.080    26  0.54    41  0.94  molprobity  1.000  
45  45  0.87  Rotameric            11  42.080    26  0.58    41  1.02  molprobity  1.000  
46  46  0.86  Rotameric            11  44.560    26  0.55    41  1.20  molprobity  1.000  
47  47  0.47  Rotameric            11  47.200    25  0.33    39  0.80  molprobity  1.000  
48  48  0.71  Rotameric            11  45.840    26  0.42    41  0.81  molprobity  1.000  
49  49  0.96  Rotameric            11  42.380    22  0.69    34  1.34  molprobity  1.000  
50  50  0.93  Rotameric            11  40.210    26  0.61    41  0.70  molprobity  1.000  
51  51  0.97  Rotameric            11  41.090    22  0.44    34  1.05  molprobity  1.000  
52  52  0.93  Rotameric            11  47.200    22  0.30    34  0.82  molprobity  1.000  
53  53  0.97  Rotameric            10  55.940    21  0.28    30  0.76  molprobity  1.000  
54  54     ?  ?                    26  53.790    13  0.35    12  0.77  mogul       1.000  
55  55     ?  ?                     5  34.590     7  1.28     8  1.59  mogul       1.000  
56  56     ?  ?                     ?  54.850     ?     ?     ?     ?  ?           1.000  
57  57     ?  ?                     ?  59.360     ?     ?     ?     ?  ?           1.000  
58  58     ?  ?                     ?  55.240     ?     ?     ?     ?  ?           1.000  
59  59     ?  ?                     ?  60.480     ?     ?     ?     ?  ?           1.000  
60  60     ?  ?                     ?  54.900     ?     ?     ?     ?  ?           1.000  
61  61     ?  ?                     ?  42.760     ?     ?     ?     ?  ?           1.000  
62  62     ?  ?                     ?  35.580     ?     ?     ?     ?  ?           1.000  
63  63     ?  ?                     ?  43.160     ?     ?     ?     ?  ?           1.000  
64  64     ?  ?                     ?  41.800     ?     ?     ?     ?  ?           1.000  
65  65     ?  ?                     ?  44.800     ?     ?     ?     ?  ?           1.000  
66  66     ?  ?                     ?  38.360     ?     ?     ?     ?  ?           1.000  
67  67     ?  ?                     ?  45.200     ?     ?     ?     ?  ?           1.000  
68  68     ?  ?                     ?  44.080     ?     ?     ?     ?  ?           1.000  
69  69     ?  ?                     ?  46.390     ?     ?     ?     ?  ?           1.000  
70  70     ?  ?                     ?  36.870     ?     ?     ?     ?  ?           1.000  
71  71     ?  ?                     ?  47.380     ?     ?     ?     ?  ?           1.000  
72  72     ?  ?                     ?  55.080     ?     ?     ?     ?  ?           1.000  
73  73     ?  ?                     ?  35.510     ?     ?     ?     ?  ?           1.000  
74  74     ?  ?                     ?  48.130     ?     ?     ?     ?  ?           1.000  
75  75     ?  ?                     ?  35.090     ?     ?     ?     ?  ?           1.000  
76  76     ?  ?                     ?  43.410     ?     ?     ?     ?  ?           1.000  
77  77     ?  ?                     ?  46.890     ?     ?     ?     ?  ?           1.000  
78  78     ?  ?                     ?  40.720     ?     ?     ?     ?  ?           1.000  
79  79     ?  ?                     ?  47.770     ?     ?     ?     ?  ?           1.000  
80  80     ?  ?                     ?  48.130     ?     ?     ?     ?  ?           1.000  
81  81     ?  ?                     ?  50.330     ?     ?     ?     ?  ?           1.000  
82  82     ?  ?                     ?  54.690     ?     ?     ?     ?  ?           1.000  
83  83     ?  ?                     ?  49.490     ?     ?     ?     ?  ?           1.000  
#
loop_
_pdbx_vrpt_instance_clashes.ordinal
_pdbx_vrpt_instance_clashes.instance_id
_pdbx_vrpt_instance_clashes.label_atom_id
_pdbx_vrpt_instance_clashes.cid
_pdbx_vrpt_instance_clashes.clashmag
_pdbx_vrpt_instance_clashes.dist
1  32  N7     1  0.51  2.26  
2  53  "O3'"  2  0.48  2.19  
3  54  H62    1  0.51  2.26  
4  60  O      2  0.48  2.19  
#
_pdbx_vrpt_instance_mogul_bond_outliers.ordinal      1
_pdbx_vrpt_instance_mogul_bond_outliers.instance_id  55
_pdbx_vrpt_instance_mogul_bond_outliers.atom_1       C6
_pdbx_vrpt_instance_mogul_bond_outliers.atom_2       N1
_pdbx_vrpt_instance_mogul_bond_outliers.obsval       1.34
_pdbx_vrpt_instance_mogul_bond_outliers.mean         1.37
_pdbx_vrpt_instance_mogul_bond_outliers.numobs       314
_pdbx_vrpt_instance_mogul_bond_outliers.stdev        0.01
_pdbx_vrpt_instance_mogul_bond_outliers.Zscore       -2.22
_pdbx_vrpt_instance_mogul_bond_outliers.mindiff      0.00
#
loop_
_pdbx_vrpt_instance_mogul_angle_outliers.ordinal
_pdbx_vrpt_instance_mogul_angle_outliers.instance_id
_pdbx_vrpt_instance_mogul_angle_outliers.atom_1
_pdbx_vrpt_instance_mogul_angle_outliers.atom_2
_pdbx_vrpt_instance_mogul_angle_outliers.atom_3
_pdbx_vrpt_instance_mogul_angle_outliers.obsval
_pdbx_vrpt_instance_mogul_angle_outliers.mean
_pdbx_vrpt_instance_mogul_angle_outliers.numobs
_pdbx_vrpt_instance_mogul_angle_outliers.stdev
_pdbx_vrpt_instance_mogul_angle_outliers.Zscore
_pdbx_vrpt_instance_mogul_angle_outliers.mindiff
1  55  C8  N7  C5  107.71  102.99  26  1.90   2.48  0.67  
2  55  O6  C6  C5  119.97  124.37  49  1.95  -2.25  0.24  
3  55  C5  C6  N1  118.19  113.95  45  1.77   2.40  1.34  
#
loop_
_pdbx_vrpt_instance_mogul_torsion_outliers.ordinal
_pdbx_vrpt_instance_mogul_torsion_outliers.instance_id
_pdbx_vrpt_instance_mogul_torsion_outliers.atom_1
_pdbx_vrpt_instance_mogul_torsion_outliers.atom_2
_pdbx_vrpt_instance_mogul_torsion_outliers.atom_3
_pdbx_vrpt_instance_mogul_torsion_outliers.atom_4
_pdbx_vrpt_instance_mogul_torsion_outliers.obsval
_pdbx_vrpt_instance_mogul_torsion_outliers.mean
_pdbx_vrpt_instance_mogul_torsion_outliers.numobs
_pdbx_vrpt_instance_mogul_torsion_outliers.stdev
_pdbx_vrpt_instance_mogul_torsion_outliers.mindiff
_pdbx_vrpt_instance_mogul_torsion_outliers.local_density
1  54  N5  C6  C7   C8   -154.67  47.84  3173  36.29  0.09  2.68  
2  54  C7  C8  C9   N10    86.46  61.34  3173  32.18  0.20  2.43  
3  54  C8  C9  N10  C11  -152.85  28.36   500  21.28  0.16  4.60  
#
loop_
_pdbx_vrpt_model_instance_density.ordinal
_pdbx_vrpt_model_instance_density.instance_id
_pdbx_vrpt_model_instance_density.natoms_eds
_pdbx_vrpt_model_instance_density.RSRCC
_pdbx_vrpt_model_instance_density.RSR
_pdbx_vrpt_model_instance_density.RSRZ
 1   1  32  0.767  0.279       ?  
 2   2  23  0.918  0.195   1.168  
 3   3  23  0.932  0.161   0.586  
 4   4  20  0.914  0.109  -0.399  
 5   5  23  0.938  0.119  -0.134  
 6   6  20  0.963  0.155   0.154  
 7   7  23  0.946  0.153   0.449  
 8   8  20  0.957  0.129  -0.159  
 9   9  22  0.959  0.117  -0.274  
10  10  20  0.885  0.149   0.301  
11  11  20  0.933  0.141   0.185  
12  12  23  0.958  0.148   0.363  
13  13  20  0.957  0.142  -0.002  
14  14  20  0.914  0.171   0.346  
15  15  20  0.749  0.312   2.674  
16  16  22  0.909  0.165   0.461  
17  17  22  0.955  0.138   0.047  
18  18  20  0.940  0.152   0.345  
19  19  20  0.963  0.138  -0.050  
20  20  20  0.952  0.190   0.898  
21  21  23  0.947  0.139   0.209  
22  22  20  0.957  0.153   0.130  
23  23  20  0.952  0.129   0.010  
24  24  20  0.948  0.125  -0.048  
25  25  20  0.924  0.137   0.127  
26  26  22  0.916  0.117  -0.274  
27  27  23  0.942  0.107  -0.339  
28  28  20  0.938  0.109  -0.281  
29  29  20  0.946  0.142  -0.002  
30  30  20  0.967  0.125  -0.207  
31  31  20  0.952  0.118  -0.150  
32  32  23  0.938  0.136   0.158  
33  33  22  0.935  0.185   0.767  
34  34  20  0.945  0.143   0.214  
35  35  20  0.945  0.131  -0.135  
36  36  23  0.927  0.135   0.140  
37  37  23  0.931  0.118  -0.151  
38  38  23  0.941  0.119  -0.134  
39  39  22  0.918  0.125  -0.152  
40  40  20  0.939  0.119  -0.135  
41  41  20  0.945  0.116  -0.315  
42  42  22  0.963  0.127  -0.121  
43  43  20  0.952  0.114  -0.208  
44  44  23  0.947  0.136   0.158  
45  45  23  0.965  0.136   0.158  
46  46  23  0.948  0.136   0.158  
47  47  22  0.950  0.114  -0.320  
48  48  23  0.923  0.137   0.175  
49  49  20  0.942  0.144   0.229  
50  50  23  0.970  0.123  -0.065  
51  51  20  0.952  0.120  -0.121  
52  52  20  0.953  0.133   0.068  
53  53  20  0.902  0.166   0.286  
54  54  14  0.834  0.260       ?  
55  55  11  0.951  0.184       ?  
56  56   1  0.967  0.063       ?  
57  57   1  0.860  0.113       ?  
58  58   1  0.979  0.226       ?  
59  59   1  0.927  0.047       ?  
60  60   1  0.751  0.190       ?  
61  61   1  0.963  0.142       ?  
62  62   1  0.853  0.259       ?  
63  63   1  0.897  0.401       ?  
64  64   1  0.908  0.334       ?  
65  65   1  0.951  0.279       ?  
66  66   1  0.956  0.290       ?  
67  67   1  0.890  0.141       ?  
68  68   1  0.869  0.201       ?  
69  69   1  0.897  0.165       ?  
70  70   1  0.954  0.370       ?  
71  71   1  0.882  0.196       ?  
72  72   1  0.769  0.177       ?  
73  73   1  0.931  0.270       ?  
74  74   1  0.906  0.403       ?  
75  75   1  0.977  0.188       ?  
76  76   1  0.946  0.357       ?  
77  77   1  0.837  0.307       ?  
78  78   1  0.955  0.115       ?  
79  79   1  0.899  0.173       ?  
80  80   1  0.913  0.242       ?  
81  81   1  0.914  0.239       ?  
82  82   1  0.859  0.182       ?  
83  83   1  0.947  0.476       ?  
#
loop_
_pdbx_vrpt_software.ordinal
_pdbx_vrpt_software.name
_pdbx_vrpt_software.version
_pdbx_vrpt_software.success_y_or_n
1  molprobity   4.02b-467                                                             Y  
2  mogul        "1.8.5 (274361), CSD as541be (2020)"                                  Y  
3  eds          2.37.1                                                                Y  
4  dcc          '"2.27  (2023-04-10)"'                                                Y  
5  xtriage      1.13                                                                  Y  
6  percentiles  "20191225.v01 (using entries in the PDB archive December 25th 2019)"  Y  
##
