data_8HB3

_pdbx_vrpt_database.id    PDB
_pdbx_vrpt_database.code  8HB3
#
_pdbx_vrpt_exptl.ordinal  1
_pdbx_vrpt_exptl.method   x-ray
#
_pdbx_vrpt_summary.entry_id                    8HB3
_pdbx_vrpt_summary.PDB_deposition_date         2022-10-27
_pdbx_vrpt_summary.PDB_revision_number         3
_pdbx_vrpt_summary.PDB_revision_date           2023-11-29
_pdbx_vrpt_summary.RNA_suiteness               0.42
_pdbx_vrpt_summary.report_creation_date        2023-11-22:15:13
_pdbx_vrpt_summary.attempted_validation_steps  molprobity,validation-pack,xtriage,eds,mogul,buster-report,percentiles,writexml,writecif,writepdf
_pdbx_vrpt_summary.ligands_for_buster_report   Y
#
loop_
_pdbx_vrpt_entity.id
_pdbx_vrpt_entity.type
_pdbx_vrpt_entity.description
1  polymer      "RNA (5'-R(*AP*GP*AP*GP*CP*GP*UP*UP*GP*CP*GP*UP*CP*CP*GP*AP*AP*AP*GP*UP*(CBV)P*GP*CP*C)-3')"  
2  polymer      "RNA (31-MER)"  
3  non-polymer  "Nicotinamide riboside"  
#
loop_
_pdbx_vrpt_asym.label_asym_id
_pdbx_vrpt_asym.entity_id
A  1  
B  2  
C  3  
D  3  
#
loop_
_pdbx_vrpt_percentile_list.id
_pdbx_vrpt_percentile_list.range
_pdbx_vrpt_percentile_list.exp_method
1  all   x-ray  
2  2.87  x-ray  
#
loop_
_pdbx_vrpt_percentile_type.id
_pdbx_vrpt_percentile_type.type
1  all_atom_clashscore    
2  RSRZ_outliers_percent  
3  R_value_R_free         
4  RNAsuiteness_percent   
#
loop_
_pdbx_vrpt_percentile_conditions.id
_pdbx_vrpt_percentile_conditions.percentile_list_id
_pdbx_vrpt_percentile_conditions.type_id
_pdbx_vrpt_percentile_conditions.rank
_pdbx_vrpt_percentile_conditions.number_entries_total
_pdbx_vrpt_percentile_conditions.res_high
_pdbx_vrpt_percentile_conditions.res_low
1  1  1  13.87  141614     ?     ?  
2  2  1  37.33    2947  2.86  2.90  
3  1  2   0.42  127900     ?     ?  
4  2  2   0.27    2629  2.86  2.90  
5  1  3  77.02  130704     ?     ?  
6  2  3  97.65    2691  2.86  2.90  
7  1  4  25.21    3102     ?     ?  
8  2  4  24.62    1121  2.60  3.16  
#
loop_
_pdbx_vrpt_percentile_entity_view.ordinal
_pdbx_vrpt_percentile_entity_view.conditions_id
_pdbx_vrpt_percentile_entity_view.type_id
_pdbx_vrpt_percentile_entity_view.label_asym_id
_pdbx_vrpt_percentile_entity_view.PDB_model_num
_pdbx_vrpt_percentile_entity_view.entity_id
_pdbx_vrpt_percentile_entity_view.auth_asym_id
_pdbx_vrpt_percentile_entity_view.rank
1  3  2  A  1  1  A  0.14  
2  4  2  A  1  1  A  0.15  
3  3  2  B  1  2  B  3.12  
4  4  2  B  1  2  B  2.21  
#
loop_
_pdbx_vrpt_summary_entity_geometry.ordinal
_pdbx_vrpt_summary_entity_geometry.PDB_model_num
_pdbx_vrpt_summary_entity_geometry.entity_id
_pdbx_vrpt_summary_entity_geometry.label_asym_id
_pdbx_vrpt_summary_entity_geometry.auth_asym_id
_pdbx_vrpt_summary_entity_geometry.angles_RMSZ
_pdbx_vrpt_summary_entity_geometry.bonds_RMSZ
_pdbx_vrpt_summary_entity_geometry.num_bonds_RMSZ
_pdbx_vrpt_summary_entity_geometry.num_angles_RMSZ
1  1  1  A  A  1.12  0.52  548   851  
2  1  2  B  B  1.19  0.56  748  1165  
#
_pdbx_vrpt_summary_geometry.ordinal          1
_pdbx_vrpt_summary_geometry.clashscore       15.72
_pdbx_vrpt_summary_geometry.num_H_reduce     630
_pdbx_vrpt_summary_geometry.num_bonds_RMSZ   1296
_pdbx_vrpt_summary_geometry.bonds_RMSZ       0.54
_pdbx_vrpt_summary_geometry.num_angles_RMSZ  2016
_pdbx_vrpt_summary_geometry.angles_RMSZ      1.16
#
_pdbx_vrpt_summary_diffraction.exp_method                x-ray
_pdbx_vrpt_summary_diffraction.ordinal                   1
_pdbx_vrpt_summary_diffraction.Babinet_b                 400.000
_pdbx_vrpt_summary_diffraction.bulk_solvent_b            59.026
_pdbx_vrpt_summary_diffraction.Wilson_B_estimate         86.670
_pdbx_vrpt_summary_diffraction.I_over_sigma              2.59(2.86A)
_pdbx_vrpt_summary_diffraction.num_miller_indices        6201
_pdbx_vrpt_summary_diffraction.Babinet_k                 0.640
_pdbx_vrpt_summary_diffraction.bulk_solvent_k            0.249
_pdbx_vrpt_summary_diffraction.Padilla_Yeates_L_mean     0.494
_pdbx_vrpt_summary_diffraction.Padilla_Yeates_L2_mean    0.329
_pdbx_vrpt_summary_diffraction.Fo_Fc_correlation         0.845
_pdbx_vrpt_summary_diffraction.twin_fraction             -h,-k,l:0.042
_pdbx_vrpt_summary_diffraction.DCC_R                     0.20
_pdbx_vrpt_summary_diffraction.DCC_Rfree                 0.21
_pdbx_vrpt_summary_diffraction.EDS_R                     0.22
_pdbx_vrpt_summary_diffraction.EDS_res_high              2.87
_pdbx_vrpt_summary_diffraction.EDS_res_low               65.59
_pdbx_vrpt_summary_diffraction.Wilson_B_aniso            "[86.979,86.979,85.898,0.000,0.000,0.000]"
_pdbx_vrpt_summary_diffraction.data_anisotropy           0.012
_pdbx_vrpt_summary_diffraction.trans_NCS_details         "The largest off-origin peak in the Patterson function is 7.78% of the height of the origin peak. No significant pseudotranslation is detected."
_pdbx_vrpt_summary_diffraction.B_factor_type             FULL
_pdbx_vrpt_summary_diffraction.acentric_outliers         2
_pdbx_vrpt_summary_diffraction.centric_outliers          0
_pdbx_vrpt_summary_diffraction.data_completeness         99.74
_pdbx_vrpt_summary_diffraction.number_reflns_R_free      300
_pdbx_vrpt_summary_diffraction.percent_free_reflections  4.83
_pdbx_vrpt_summary_diffraction.percent_RSRZ_outliers     22.22
_pdbx_vrpt_summary_diffraction.PDB_resolution_high       2.87
_pdbx_vrpt_summary_diffraction.PDB_resolution_low        29.84
_pdbx_vrpt_summary_diffraction.PDB_R                     0.20
_pdbx_vrpt_summary_diffraction.PDB_Rfree                 0.21
#
loop_
_pdbx_vrpt_model_instance.id
_pdbx_vrpt_model_instance.PDB_model_num
_pdbx_vrpt_model_instance.entity_id
_pdbx_vrpt_model_instance.label_asym_id
_pdbx_vrpt_model_instance.label_seq_id
_pdbx_vrpt_model_instance.label_comp_id
_pdbx_vrpt_model_instance.auth_asym_id
_pdbx_vrpt_model_instance.auth_seq_id
_pdbx_vrpt_model_instance.label_alt_id
_pdbx_vrpt_model_instance.PDB_ins_code
_pdbx_vrpt_model_instance.count_angle_outliers
_pdbx_vrpt_model_instance.count_clashes
_pdbx_vrpt_model_instance.count_mogul_bond_outliers
_pdbx_vrpt_model_instance.count_mogul_angle_outliers
_pdbx_vrpt_model_instance.count_mogul_torsion_outliers
_pdbx_vrpt_model_instance.ligand_of_interest
 1  1  1  A   1  A    A    1  .  ?        ?     ?     ?     ?     ?  ?     
 2  1  1  A   2  G    A    2  .  ?        ?     ?     ?     ?     ?  ?     
 3  1  1  A   3  A    A    3  .  ?        ?     ?     ?     ?     ?  ?     
 4  1  1  A   4  G    A    4  .  ?        ?     ?     ?     ?     ?  ?     
 5  1  1  A   5  C    A    5  .  ?        ?     ?     ?     ?     ?  ?     
 6  1  1  A   6  G    A    6  .  ?        ?     1     ?     ?     ?  ?     
 7  1  1  A   7  U    A    7  .  ?        1     1     ?     ?     ?  ?     
 8  1  1  A   8  U    A    8  .  ?        ?     ?     ?     ?     ?  ?     
 9  1  1  A   9  G    A    9  .  ?        ?     ?     ?     ?     ?  ?     
10  1  1  A  10  C    A   10  .  ?        ?     1     ?     ?     ?  ?     
11  1  1  A  11  G    A   11  .  ?        ?     ?     ?     ?     ?  ?     
12  1  1  A  12  U    A   12  .  ?        ?     1     ?     ?     ?  ?     
13  1  1  A  13  C    A   13  .  ?        ?     2     ?     ?     ?  ?     
14  1  1  A  14  C    A   14  .  ?        ?     1     ?     ?     ?  ?     
15  1  1  A  15  G    A   15  .  ?        ?     ?     ?     ?     ?  ?     
16  1  1  A  16  A    A   16  .  ?        ?     ?     ?     ?     ?  ?     
17  1  1  A  17  A    A   17  .  ?        ?     ?     ?     ?     ?  ?     
18  1  1  A  18  A    A   18  .  ?        ?     ?     ?     ?     ?  ?     
19  1  1  A  19  G    A   19  .  ?        ?     ?     ?     ?     ?  ?     
20  1  1  A  20  U    A   20  .  ?        ?     1     ?     ?     ?  ?     
21  1  1  A  21  CBV  A   21  .  ?        ?     3     8     6     2  ?     
22  1  1  A  22  G    A   22  .  ?        ?     2     ?     ?     ?  ?     
23  1  1  A  23  C    A   23  .  ?        ?     2     ?     ?     ?  ?     
24  1  1  A  24  C    A   24  .  ?        ?     ?     ?     ?     ?  ?     
25  1  2  B   1  G    B   26  .  ?        ?     2     ?     ?     ?  ?     
26  1  2  B   2  C    B   27  .  ?        1     4     ?     ?     ?  ?     
27  1  2  B   3  G    B   28  .  ?        ?     3     ?     ?     ?  ?     
28  1  2  B   4  A    B   29  .  ?        ?     3     ?     ?     ?  ?     
29  1  2  B   5  C    B   30  .  ?        ?     4     ?     ?     ?  ?     
30  1  2  B   6  A    B   31  .  ?        ?     2     ?     ?     ?  ?     
31  1  2  B   7  C    B   32  .  ?        ?     1     ?     ?     ?  ?     
32  1  2  B   8  G    B   33  .  ?        ?     2     ?     ?     ?  ?     
33  1  2  B   9  G    B   34  .  ?        ?     3     ?     ?     ?  ?     
34  1  2  B  10  C    B   35  .  ?        ?     2     ?     ?     ?  ?     
35  1  2  B  11  U    B   36  .  ?        ?     1     ?     ?     ?  ?     
36  1  2  B  12  C    B   37  .  ?        ?     3     ?     ?     ?  ?     
37  1  2  B  13  U    B   38  .  ?        ?     2     ?     ?     ?  ?     
38  1  2  B  14  U    B   39  .  ?        ?     ?     ?     ?     ?  ?     
39  1  2  B  15  U    B   40  .  ?        ?     ?     ?     ?     ?  ?     
40  1  2  B  16  A    B   41  .  ?        ?     ?     ?     ?     ?  ?     
41  1  2  B  17  A    B   42  .  ?        ?     ?     ?     ?     ?  ?     
42  1  2  B  18  A    B   43  .  ?        ?     ?     ?     ?     ?  ?     
43  1  2  B  19  A    B   44  .  ?        ?     ?     ?     ?     ?  ?     
44  1  2  B  20  A    B   45  .  ?        ?     ?     ?     ?     ?  ?     
45  1  2  B  21  C    B   46  .  ?        ?     ?     ?     ?     ?  ?     
46  1  2  B  22  A    B   47  .  ?        ?     ?     ?     ?     ?  ?     
47  1  2  B  23  A    B   48  .  ?        ?     2     ?     ?     ?  ?     
48  1  2  B  24  A    B   49  .  ?        ?     ?     ?     ?     ?  ?     
49  1  2  B  25  A    B   50  .  ?        ?     1     ?     ?     ?  ?     
50  1  2  B  26  G    B   51  .  ?        ?     1     ?     ?     ?  ?     
51  1  2  B  27  G    B   52  .  ?        ?     2     ?     ?     ?  ?     
52  1  2  B  28  A    B   53  .  ?        ?     1     ?     ?     ?  ?     
53  1  2  B  29  G    B   54  .  ?        ?     ?     ?     ?     ?  ?     
54  1  2  B  30  A    B   55  .  ?        ?     ?     ?     ?     ?  ?     
55  1  2  B  31  A    B   56  .  ?        ?     ?     ?     ?     ?  ?     
56  1  3  C   .  NNR  A  101  .  ?        ?     3     1     1     2  Y     
57  1  3  D   .  NNR  B  101  .  ?        ?     1     1     2     ?  Y     
#
loop_
_pdbx_vrpt_model_instance_geometry.ordinal
_pdbx_vrpt_model_instance_geometry.instance_id
_pdbx_vrpt_model_instance_geometry.RNA_score
_pdbx_vrpt_model_instance_geometry.RNA_suite
_pdbx_vrpt_model_instance_geometry.RNA_pucker
_pdbx_vrpt_model_instance_geometry.num_H_reduce
_pdbx_vrpt_model_instance_geometry.OWAB
_pdbx_vrpt_model_instance_geometry.num_bonds_RMSZ
_pdbx_vrpt_model_instance_geometry.bonds_RMSZ
_pdbx_vrpt_model_instance_geometry.num_angles_RMSZ
_pdbx_vrpt_model_instance_geometry.angles_RMSZ
_pdbx_vrpt_model_instance_geometry.program_for_bond_angle_geometry
_pdbx_vrpt_model_instance_geometry.average_occupancy
 1   1  0.00  NotAvailable       ?        12  133.380  22  0.70  35  0.97  molprobity  1.000  
 2   2  0.00  NonRotameric       ?        11  115.950  26  0.49  41  0.95  molprobity  1.000  
 3   3  0.23  Rotameric          ?        11  111.510  25  0.76  39  1.55  molprobity  1.000  
 4   4  0.18  Rotameric          ?        11  106.030  26  0.63  41  1.13  molprobity  1.000  
 5   5  0.36  Rotameric          ?        11   97.100  22  0.40  34  1.05  molprobity  1.000  
 6   6  0.29  Rotameric          ?        11   82.520  26  0.55  41  1.80  molprobity  1.000  
 7   7  0.55  Rotameric          ?        10   76.420  22  0.56  34  1.85  molprobity  1.000  
 8   8  0.28  Rotameric          ?        10   74.900  22  0.44  34  0.66  molprobity  1.000  
 9   9  0.13  Rotameric          ?        11  145.180  26  0.35  41  0.92  molprobity  1.000  
10  10  0.39  Rotameric          ?        11   83.330  22  0.50  34  1.27  molprobity  1.000  
11  11  0.04  Rotameric          ?        11   97.310  26  0.70  41  1.17  molprobity  1.000  
12  12  0.00  Triaged/NotBinned  ?        10   80.440  22  0.60  34  0.91  molprobity  1.000  
13  13  0.89  Rotameric          ?        11   79.080  22  0.47  34  0.92  molprobity  1.000  
14  14  0.74  Rotameric          ?        11   76.120  22  0.50  34  0.95  molprobity  1.000  
15  15  0.69  Rotameric          ?        11   82.550  26  0.69  41  1.15  molprobity  1.000  
16  16  0.00  NonRotameric       ?        11  119.020  25  0.61  39  0.66  molprobity  1.000  
17  17  0.44  Rotameric          ?        11  103.660  25  0.41  39  0.96  molprobity  1.000  
18  18  0.68  Rotameric          ?        11   93.810  25  0.38  39  0.90  molprobity  1.000  
19  19  0.50  Rotameric          ?        11   96.740  26  0.44  41  0.96  molprobity  1.000  
20  20  0.80  Rotameric          ?        10  105.970  21  0.47  30  1.32  molprobity  1.000  
21  21     ?  ?                  ?        10  116.480  23  3.13  34  2.25  mogul       1.000  
22  22  0.72  Rotameric          ?        11  128.000  26  0.41  41  1.11  molprobity  1.000  
23  23  0.00  Triaged/NotBinned  ?        11  142.180  22  0.31  34  0.97  molprobity  1.000  
24  24  0.23  Rotameric          ?        12  155.050  21  0.17  30  0.67  molprobity  1.000  
25  25  0.00  NotAvailable       ?        12  165.470  23  0.84  37  1.87  molprobity  1.000  
26  26  0.33  Rotameric          ?        11  161.930  22  0.90  34  2.13  molprobity  1.000  
27  27  0.00  Triaged/NotBinned  ?        11  141.410  26  0.36  41  0.81  molprobity  1.000  
28  28  0.42  Rotameric          ?        11  126.380  25  0.44  39  1.02  molprobity  1.000  
29  29  0.03  Rotameric          ?        11  141.160  22  0.50  34  1.55  molprobity  1.000  
30  30  0.00  NonRotameric       ?        11   97.650  25  0.80  39  1.68  molprobity  1.000  
31  31  0.72  Rotameric          ?        11   85.260  22  0.53  34  1.42  molprobity  1.000  
32  32  0.60  Rotameric          ?        11   92.870  26  0.66  41  1.14  molprobity  1.000  
33  33  0.60  Rotameric          ?        11   96.810  26  0.41  41  0.89  molprobity  1.000  
34  34  0.63  Rotameric          ?        11  105.820  22  0.40  34  1.09  molprobity  1.000  
35  35  0.95  Rotameric          ?        10  113.830  22  0.35  34  0.88  molprobity  1.000  
36  36  0.24  Rotameric          ?        11  122.160  22  0.57  34  1.68  molprobity  1.000  
37  37  0.66  Rotameric          ?        10  132.320  22  0.28  34  1.00  molprobity  1.000  
38  38  0.13  Rotameric          ?        10  145.470  22  0.34  34  0.98  molprobity  1.000  
39  39  0.45  Rotameric          ?        10  152.150  22  0.32  34  1.14  molprobity  1.000  
40  40  0.18  Rotameric          ?        11  137.060  25  0.53  39  0.95  molprobity  1.000  
41  41  0.19  Rotameric          ?        11  132.490  25  0.29  39  0.72  molprobity  1.000  
42  42  0.43  Rotameric          ?        11  130.930  25  0.25  39  0.78  molprobity  1.000  
43  43  0.24  Rotameric          ?        11  122.920  25  0.39  39  1.28  molprobity  1.000  
44  44  0.48  Rotameric          ?        11  106.910  25  0.42  39  0.89  molprobity  1.000  
45  45  0.85  Rotameric          ?        11   90.560  22  0.55  34  0.90  molprobity  1.000  
46  46  0.59  Rotameric          ?        11   85.280  25  0.46  39  0.95  molprobity  1.000  
47  47  0.15  Rotameric          outlier  11   88.290  25  0.59  39  1.09  molprobity  1.000  
48  48  0.00  NonRotameric       ?        11  131.120  25  1.08  39  1.25  molprobity  1.000  
49  49  0.16  Rotameric          ?        11   88.820  25  0.51  39  0.92  molprobity  1.000  
50  50  0.87  Rotameric          ?        11   79.870  26  0.82  41  1.77  molprobity  1.000  
51  51  0.93  Rotameric          ?        11   79.420  26  0.70  41  1.08  molprobity  1.000  
52  52  0.87  Rotameric          ?        11   81.830  25  0.64  39  0.85  molprobity  1.000  
53  53  0.70  Rotameric          ?        11   90.830  26  0.40  41  1.06  molprobity  1.000  
54  54  0.00  NonRotameric       ?        11  109.220  25  0.37  39  0.80  molprobity  1.000  
55  55  0.23  Rotameric          ?        12  195.600  24  0.28  35  0.89  molprobity  1.000  
56  56     ?  ?                  ?        15   83.870  18  0.96  23  0.92  mogul       1.000  
57  57     ?  ?                  ?        15   81.120  18  0.97  23  1.22  mogul       1.000  
#
loop_
_pdbx_vrpt_instance_clashes.ordinal
_pdbx_vrpt_instance_clashes.instance_id
_pdbx_vrpt_instance_clashes.label_atom_id
_pdbx_vrpt_instance_clashes.cid
_pdbx_vrpt_instance_clashes.clashmag
_pdbx_vrpt_instance_clashes.dist
 1   6  N2       1  0.47  2.44  
 2   7  O4       1  0.47  2.44  
 3  10  OP1      2  0.42  2.31  
 4  12  "H2'"    3  0.54  2.43  
 5  13  C6       3  0.54  2.43  
 6  13  "C2'"    4  0.41  2.68  
 7  14  "O5'"    4  0.41  2.68  
 8  20  "O2'"    5  0.46  2.14  
 9  21  "H5'1"   5  0.46  2.14  
10  21  H6       6  0.42  2.20  
11  21  "O5'"    6  0.42  2.20  
12  22  "C2'"    7  0.59  2.32  
13  22  "H2'"    8  0.48  1.95  
14  23  "H5'"    7  0.59  2.32  
15  23  "H5'"    8  0.48  1.95  
16  25  "O2'"    9  0.47  2.15  
17  25  C6      10  0.41  3.08  
18  26  "HO2'"  11  0.70  2.14  
19  26  "O2'"   12  0.62  2.16  
20  26  "H5'"    9  0.47  2.15  
21  26  C4      10  0.41  3.08  
22  27  P       11  0.70  2.14  
23  27  "O5'"   12  0.62  2.16  
24  27  "O2'"   13  0.47  2.14  
25  28  "H5'"   13  0.47  2.14  
26  28  "O2'"   14  0.46  2.15  
27  28  C6      15  0.46  2.84  
28  29  "O2'"   16  0.76  2.03  
29  29  "H5'"   14  0.46  2.15  
30  29  N4      15  0.46  2.84  
31  29  "HO2'"  17  0.41  2.34  
32  30  OP2     16  0.76  2.03  
33  30  P       17  0.41  2.34  
34  31  "O4'"   18  0.51  2.11  
35  32  O6      19  0.45  2.17  
36  32  "H2'"   20  0.40  2.22  
37  33  "H2'"   21  0.54  1.72  
38  33  "H2'"   22  0.42  2.52  
39  33  "O4'"   20  0.40  2.22  
40  34  H6      21  0.54  1.72  
41  34  C6      22  0.42  2.52  
42  35  "H2'"   23  0.53  2.43  
43  36  C6      23  0.53  2.43  
44  36  "O2'"   24  0.52  2.09  
45  36  "C2'"   25  0.46  2.45  
46  37  "H5'"   24  0.52  2.09  
47  37  "H5'"   25  0.46  2.45  
48  47  N1      26  0.45  2.65  
49  47  "O2'"    2  0.42  2.31  
50  49  "H1'"   18  0.51  2.11  
51  50  N7      26  0.45  2.65  
52  51  O6      27  0.54  2.07  
53  51  "H2'"   28  0.51  2.46  
54  52  C8      28  0.51  2.46  
55  56  H2      19  0.45  2.17  
56  56  H6      29  0.43  2.48  
57  56  C5R     29  0.43  2.48  
58  57  H6      27  0.54  2.07  
#
loop_
_pdbx_vrpt_instance_intra_angle_outliers.ordinal
_pdbx_vrpt_instance_intra_angle_outliers.instance_id
_pdbx_vrpt_instance_intra_angle_outliers.atom_1
_pdbx_vrpt_instance_intra_angle_outliers.atom_2
_pdbx_vrpt_instance_intra_angle_outliers.atom_3
_pdbx_vrpt_instance_intra_angle_outliers.obs
_pdbx_vrpt_instance_intra_angle_outliers.mean
_pdbx_vrpt_instance_intra_angle_outliers.stdev
_pdbx_vrpt_instance_intra_angle_outliers.Z
1   7  C5  C4  O4  122.252  125.900  0.600  -6.08  
2  26  C5  C4  N4  116.561  120.200  0.700  -5.20  
#
loop_
_pdbx_vrpt_instance_mogul_bond_outliers.ordinal
_pdbx_vrpt_instance_mogul_bond_outliers.instance_id
_pdbx_vrpt_instance_mogul_bond_outliers.atom_1
_pdbx_vrpt_instance_mogul_bond_outliers.atom_2
_pdbx_vrpt_instance_mogul_bond_outliers.obsval
_pdbx_vrpt_instance_mogul_bond_outliers.mean
_pdbx_vrpt_instance_mogul_bond_outliers.numobs
_pdbx_vrpt_instance_mogul_bond_outliers.stdev
_pdbx_vrpt_instance_mogul_bond_outliers.Zscore
_pdbx_vrpt_instance_mogul_bond_outliers.mindiff
 1  21  C2   N1   1.49  1.40  396  0.02   4.47  0.00  
 2  21  C6   N1   1.46  1.38  917  0.02   5.12  0.01  
 3  21  O2   C2   1.17  1.23  821  0.02  -3.39  0.00  
 4  21  C2   N3   1.48  1.36  702  0.02   5.95  0.04  
 5  21  C4   N3   1.44  1.34  275  0.02   5.85  0.01  
 6  21  C4   N4   1.46  1.34  961  0.03   4.74  0.01  
 7  21  C4   C5   1.49  1.42   24  0.03   2.97  0.03  
 8  21  C6   C5   1.49  1.34   57  0.02   7.87  0.12  
 9  56  O4R  C1R  1.36  1.41   20  0.01  -3.19  0.02  
10  57  O4R  C1R  1.36  1.41   20  0.01  -3.42  0.02  
#
loop_
_pdbx_vrpt_instance_mogul_angle_outliers.ordinal
_pdbx_vrpt_instance_mogul_angle_outliers.instance_id
_pdbx_vrpt_instance_mogul_angle_outliers.atom_1
_pdbx_vrpt_instance_mogul_angle_outliers.atom_2
_pdbx_vrpt_instance_mogul_angle_outliers.atom_3
_pdbx_vrpt_instance_mogul_angle_outliers.obsval
_pdbx_vrpt_instance_mogul_angle_outliers.mean
_pdbx_vrpt_instance_mogul_angle_outliers.numobs
_pdbx_vrpt_instance_mogul_angle_outliers.stdev
_pdbx_vrpt_instance_mogul_angle_outliers.Zscore
_pdbx_vrpt_instance_mogul_angle_outliers.mindiff
1  21  O1P    P    O3P    128.63  107.64   224  3.82   5.49  10.26  
2  21  O3P    P    O2P     85.81  110.68   447  3.91  -6.35   0.20  
3  21  O3P    P    "O5'"  116.34  106.73    52  2.66   3.61   3.13  
4  21  O1P    P    O2P     88.35  110.68   447  3.91  -5.70   1.59  
5  21  O1P    P    "O5'"  114.53  106.73    52  2.66   2.93   1.31  
6  21  "O5'"  P    O2P     89.04  106.47    26  2.81  -6.22  11.74  
7  56  C3R    C2R  C1R     97.39  100.98    21  1.51  -2.38   0.32  
8  57  O4R    C4R  C5R    103.43  109.21  1736  2.16  -2.68   0.03  
9  57  C3     C7   N7     114.30  117.75  2141  1.20  -2.88   0.01  
#
loop_
_pdbx_vrpt_instance_mogul_torsion_outliers.ordinal
_pdbx_vrpt_instance_mogul_torsion_outliers.instance_id
_pdbx_vrpt_instance_mogul_torsion_outliers.atom_1
_pdbx_vrpt_instance_mogul_torsion_outliers.atom_2
_pdbx_vrpt_instance_mogul_torsion_outliers.atom_3
_pdbx_vrpt_instance_mogul_torsion_outliers.atom_4
_pdbx_vrpt_instance_mogul_torsion_outliers.obsval
_pdbx_vrpt_instance_mogul_torsion_outliers.mean
_pdbx_vrpt_instance_mogul_torsion_outliers.numobs
_pdbx_vrpt_instance_mogul_torsion_outliers.stdev
_pdbx_vrpt_instance_mogul_torsion_outliers.mindiff
_pdbx_vrpt_instance_mogul_torsion_outliers.local_density
1  21  "C5'"  "O5'"  P    O1P    24.23  58.57    50  45.88  12.90  0.00  
2  21  "C5'"  "O5'"  P    O2P   111.99  59.58    72  10.88  11.27  0.00  
3  56  C3R    C4R    C5R  O5R     2.25  89.10  1833  54.30  20.99  0.00  
4  56  O4R    C4R    C5R  O5R  -116.43  52.49  1961   7.85  13.07  0.00  
#
loop_
_pdbx_vrpt_model_instance_density.ordinal
_pdbx_vrpt_model_instance_density.instance_id
_pdbx_vrpt_model_instance_density.natoms_eds
_pdbx_vrpt_model_instance_density.RSRCC
_pdbx_vrpt_model_instance_density.RSR
_pdbx_vrpt_model_instance_density.RSRZ
 1   1  19  0.777  0.554  5.615  
 2   2  23  0.921  0.209  0.728  
 3   3  22  0.923  0.216  0.674  
 4   4  23  0.880  0.255  1.435  
 5   5  20  0.916  0.323  2.131  
 6   6  23  0.891  0.276  1.758  
 7   7  20  0.934  0.306  1.682  
 8   8  20  0.972  0.284  1.406  
 9   9  23  0.913  0.322  2.466  
10  10  20  0.959  0.316  2.034  
11  11  23  0.954  0.222  0.928  
12  12  20  0.963  0.280  1.356  
13  13  20  0.932  0.259  1.249  
14  14  20  0.953  0.263  1.304  
15  15  23  0.938  0.329  2.574  
16  16  22  0.957  0.175  0.075  
17  17  22  0.870  0.321  2.209  
18  18  22  0.935  0.315  2.121  
19  19  23  0.936  0.263  1.558  
20  20  20  0.924  0.238  0.830  
21  21  22  0.890  0.178      ?  
22  22  23  0.883  0.235  1.128  
23  23  20  0.863  0.238  0.960  
24  24  20  0.795  0.393  3.095  
25  25  20  0.843  0.324  2.497  
26  26  20  0.831  0.274  1.456  
27  27  23  0.853  0.265  1.589  
28  28  22  0.878  0.239  1.010  
29  29  20  0.807  0.294  1.731  
30  30  22  0.811  0.246  1.113  
31  31  20  0.880  0.242  1.015  
32  32  23  0.904  0.253  1.405  
33  33  23  0.900  0.263  1.558  
34  34  20  0.877  0.308  1.924  
35  35  20  0.924  0.221  0.617  
36  36  20  0.913  0.266  1.346  
37  37  20  0.942  0.289  1.469  
38  38  20  0.916  0.315  1.794  
39  39  20  0.904  0.207  0.441  
40  40  22  0.873  0.190  0.294  
41  41  22  0.897  0.208  0.557  
42  42  22  0.887  0.235  0.952  
43  43  22  0.825  0.251  1.186  
44  44  22  0.837  0.261  1.332  
45  45  20  0.931  0.296  1.759  
46  46  22  0.923  0.247  1.127  
47  47  22  0.916  0.256  1.259  
48  48  22  0.908  0.299  1.887  
49  49  22  0.897  0.216  0.674  
50  50  23  0.951  0.315  2.358  
51  51  23  0.951  0.317  2.389  
52  52  22  0.943  0.237  0.981  
53  53  23  0.931  0.240  1.205  
54  54  22  0.929  0.251  1.186  
55  55  22  0.781  0.545  5.484  
56  56  18  0.907  0.495      ?  
57  57  18  0.905  0.568      ?  
#
loop_
_pdbx_vrpt_software.ordinal
_pdbx_vrpt_software.name
_pdbx_vrpt_software.version
_pdbx_vrpt_software.success_y_or_n
1  molprobity   4.02b-467                                                             Y  
2  mogul        "1.8.5 (274361), CSD as541be (2020)"                                  Y  
3  eds          2.36                                                                  Y  
4  dcc          '"2.27  (2023-04-10)"'                                                Y  
5  xtriage      1.13                                                                  Y  
6  percentiles  "20191225.v01 (using entries in the PDB archive December 25th 2019)"  Y  
##
