data_8ANI

_pdbx_vrpt_database.id    PDB
_pdbx_vrpt_database.code  8ANI
#
_pdbx_vrpt_exptl.ordinal  1
_pdbx_vrpt_exptl.method   x-ray
#
_pdbx_vrpt_summary.entry_id                    8ANI
_pdbx_vrpt_summary.PDB_deposition_date         2022-08-05
_pdbx_vrpt_summary.PDB_revision_number         1
_pdbx_vrpt_summary.PDB_revision_date           2023-08-02
_pdbx_vrpt_summary.report_creation_date        2023-07-27:15:15
_pdbx_vrpt_summary.attempted_validation_steps  molprobity,validation-pack,xtriage,eds,mogul,percentiles,writexml,writecif,writepdf
_pdbx_vrpt_summary.ligands_for_buster_report   N
#
loop_
_pdbx_vrpt_entity.id
_pdbx_vrpt_entity.type
_pdbx_vrpt_entity.description
1  polymer      "Peptide LYIQWL from Tc5b"  
2  non-polymer  "trifluoroacetic acid"  
3  non-polymer  ETHANOL  
4  water        water  
#
loop_
_pdbx_vrpt_asym.label_asym_id
_pdbx_vrpt_asym.entity_id
A  1  
B  1  
C  2  
D  3  
E  3  
F  4  
G  4  
#
loop_
_pdbx_vrpt_percentile_list.id
_pdbx_vrpt_percentile_list.range
_pdbx_vrpt_percentile_list.exp_method
1  all   x-ray  
2  1.35  x-ray  
#
loop_
_pdbx_vrpt_percentile_type.id
_pdbx_vrpt_percentile_type.type
1  all_atom_clashscore           
2  Ramachandran_outlier_percent  
3  rotamer_outliers_percent      
4  RSRZ_outliers_percent         
5  R_value_R_free                
#
loop_
_pdbx_vrpt_percentile_conditions.id
_pdbx_vrpt_percentile_conditions.percentile_list_id
_pdbx_vrpt_percentile_conditions.type_id
_pdbx_vrpt_percentile_conditions.rank
_pdbx_vrpt_percentile_conditions.number_entries_total
_pdbx_vrpt_percentile_conditions.res_high
_pdbx_vrpt_percentile_conditions.res_low
 1  1  1   99.96  141614     ?     ?  
 2  2  1   99.87    1551  1.34  1.38  
 3  1  2  100.00  138981     ?     ?  
 4  2  2  100.00    1530  1.34  1.38  
 5  1  3  100.00  138945     ?     ?  
 6  2  3  100.00    1530  1.34  1.38  
 7  1  4  100.00  127900     ?     ?  
 8  2  4  100.00    1487  1.34  1.38  
 9  1  5   98.77  130704     ?     ?  
10  2  5   95.47    1509  1.34  1.38  
#
loop_
_pdbx_vrpt_percentile_entity_view.ordinal
_pdbx_vrpt_percentile_entity_view.conditions_id
_pdbx_vrpt_percentile_entity_view.type_id
_pdbx_vrpt_percentile_entity_view.label_asym_id
_pdbx_vrpt_percentile_entity_view.PDB_model_num
_pdbx_vrpt_percentile_entity_view.entity_id
_pdbx_vrpt_percentile_entity_view.auth_asym_id
_pdbx_vrpt_percentile_entity_view.rank
 1  3  2  A  1  1  A  100.00  
 2  4  2  A  1  1  A  100.00  
 3  5  3  A  1  1  A  100.00  
 4  6  3  A  1  1  A  100.00  
 5  7  4  A  1  1  A  100.00  
 6  8  4  A  1  1  A  100.00  
 7  3  2  B  1  1  B  100.00  
 8  4  2  B  1  1  B  100.00  
 9  5  3  B  1  1  B  100.00  
10  6  3  B  1  1  B  100.00  
11  7  4  B  1  1  B  100.00  
12  8  4  B  1  1  B  100.00  
#
loop_
_pdbx_vrpt_summary_entity_geometry.ordinal
_pdbx_vrpt_summary_entity_geometry.PDB_model_num
_pdbx_vrpt_summary_entity_geometry.entity_id
_pdbx_vrpt_summary_entity_geometry.label_asym_id
_pdbx_vrpt_summary_entity_geometry.auth_asym_id
_pdbx_vrpt_summary_entity_geometry.angles_RMSZ
_pdbx_vrpt_summary_entity_geometry.bonds_RMSZ
_pdbx_vrpt_summary_entity_geometry.num_bonds_RMSZ
_pdbx_vrpt_summary_entity_geometry.num_angles_RMSZ
1  1  1  A  A  0.79  0.74  62  83  
2  1  1  B  B  0.81  0.69  70  94  
#
_pdbx_vrpt_summary_geometry.ordinal                        1
_pdbx_vrpt_summary_geometry.percent_ramachandran_outliers  0.00
_pdbx_vrpt_summary_geometry.percent_rotamer_outliers       0.00
_pdbx_vrpt_summary_geometry.clashscore                     0.00
_pdbx_vrpt_summary_geometry.num_H_reduce                   154
_pdbx_vrpt_summary_geometry.num_bonds_RMSZ                 132
_pdbx_vrpt_summary_geometry.bonds_RMSZ                     0.72
_pdbx_vrpt_summary_geometry.num_angles_RMSZ                177
_pdbx_vrpt_summary_geometry.angles_RMSZ                    0.80
#
_pdbx_vrpt_summary_diffraction.exp_method                x-ray
_pdbx_vrpt_summary_diffraction.ordinal                   1
_pdbx_vrpt_summary_diffraction.bulk_solvent_b            35.163
_pdbx_vrpt_summary_diffraction.Wilson_B_estimate         4.885
_pdbx_vrpt_summary_diffraction.I_over_sigma              1.06(1.35A)
_pdbx_vrpt_summary_diffraction.num_miller_indices        2253
_pdbx_vrpt_summary_diffraction.bulk_solvent_k            0.082
_pdbx_vrpt_summary_diffraction.Padilla_Yeates_L_mean     0.490
_pdbx_vrpt_summary_diffraction.Padilla_Yeates_L2_mean    0.334
_pdbx_vrpt_summary_diffraction.Fo_Fc_correlation         0.978
_pdbx_vrpt_summary_diffraction.twin_fraction             h,-k,-l:0.200
_pdbx_vrpt_summary_diffraction.DCC_R                     0.11
_pdbx_vrpt_summary_diffraction.DCC_Rfree                 0.15
_pdbx_vrpt_summary_diffraction.EDS_R                     0.12
_pdbx_vrpt_summary_diffraction.EDS_res_high              1.35
_pdbx_vrpt_summary_diffraction.EDS_res_low               18.76
_pdbx_vrpt_summary_diffraction.Wilson_B_aniso            "[2.713,6.783,5.292,0.000,-0.304,0.000]"
_pdbx_vrpt_summary_diffraction.data_anisotropy           0.826
_pdbx_vrpt_summary_diffraction.trans_NCS_details         "The analyses of the Patterson function reveals a significant off-origin peak that is 24.80 % of the origin peak, indicating pseudo-translational symmetry.  The chance of finding a peak of this or larger height by random in a structure without pseudo-translational symmetry is equal to 3.5756e-03. The detected translational NCS is most likely also responsible for the elevated intensity ratio.  See the relevant section of the logfile for more details."
_pdbx_vrpt_summary_diffraction.B_factor_type             FULL
_pdbx_vrpt_summary_diffraction.acentric_outliers         4
_pdbx_vrpt_summary_diffraction.centric_outliers          1
_pdbx_vrpt_summary_diffraction.data_completeness         93.90
_pdbx_vrpt_summary_diffraction.number_reflns_R_free      221
_pdbx_vrpt_summary_diffraction.percent_free_reflections  9.81
_pdbx_vrpt_summary_diffraction.percent_RSRZ_outliers     0.00
_pdbx_vrpt_summary_diffraction.PDB_resolution_high       1.35
_pdbx_vrpt_summary_diffraction.PDB_resolution_low        18.76
_pdbx_vrpt_summary_diffraction.PDB_R                     0.12
_pdbx_vrpt_summary_diffraction.PDB_Rfree                 0.15
#
loop_
_pdbx_vrpt_model_instance.id
_pdbx_vrpt_model_instance.PDB_model_num
_pdbx_vrpt_model_instance.entity_id
_pdbx_vrpt_model_instance.label_asym_id
_pdbx_vrpt_model_instance.label_seq_id
_pdbx_vrpt_model_instance.label_comp_id
_pdbx_vrpt_model_instance.auth_asym_id
_pdbx_vrpt_model_instance.auth_seq_id
_pdbx_vrpt_model_instance.label_alt_id
_pdbx_vrpt_model_instance.PDB_ins_code
_pdbx_vrpt_model_instance.count_mogul_torsion_outliers
 1  1  1  A  1  LEU  A    1  .  ?        ?  
 2  1  1  A  2  TYR  A    2  .  ?        ?  
 3  1  1  A  3  ILE  A    3  .  ?        ?  
 4  1  1  A  4  GLN  A    4  .  ?        ?  
 5  1  1  A  5  TRP  A    5  .  ?        ?  
 6  1  1  A  6  LEU  A    6  .  ?        ?  
 7  1  1  B  1  LEU  B    1  A  ?        ?  
 8  1  1  B  1  LEU  B    1  B  ?        ?  
 9  1  1  B  2  TYR  B    2  .  ?        ?  
10  1  1  B  3  ILE  B    3  .  ?        ?  
11  1  1  B  4  GLN  B    4  .  ?        ?  
12  1  1  B  5  TRP  B    5  .  ?        ?  
13  1  1  B  6  LEU  B    6  .  ?        ?  
14  1  2  C  .  TFA  B  101  A  ?        2  
15  1  2  C  .  TFA  B  101  B  ?        ?  
16  1  3  D  .  EOH  B  102  .  ?        ?  
17  1  3  E  .  EOH  B  103  A  ?        ?  
18  1  3  E  .  EOH  B  103  B  ?        ?  
19  1  4  F  .  HOH  A  101  .  ?        ?  
20  1  4  F  .  HOH  A  102  .  ?        ?  
21  1  4  G  .  HOH  B  201  .  ?        ?  
#
loop_
_pdbx_vrpt_model_instance_geometry.ordinal
_pdbx_vrpt_model_instance_geometry.instance_id
_pdbx_vrpt_model_instance_geometry.rotamer_class
_pdbx_vrpt_model_instance_geometry.phi
_pdbx_vrpt_model_instance_geometry.psi
_pdbx_vrpt_model_instance_geometry.ramachandran_class
_pdbx_vrpt_model_instance_geometry.num_H_reduce
_pdbx_vrpt_model_instance_geometry.OWAB
_pdbx_vrpt_model_instance_geometry.num_bonds_RMSZ
_pdbx_vrpt_model_instance_geometry.bonds_RMSZ
_pdbx_vrpt_model_instance_geometry.num_angles_RMSZ
_pdbx_vrpt_model_instance_geometry.angles_RMSZ
_pdbx_vrpt_model_instance_geometry.program_for_bond_angle_geometry
_pdbx_vrpt_model_instance_geometry.average_occupancy
 1   1  pp         ?      ?  ?          13   5.660     8  0.76    11  1.24  molprobity  1.000  
 2   2  t80   -129.4  126.0  Favored     9   4.330    13  0.71    18  0.70  molprobity  1.000  
 3   3  mt    -123.8  128.3  Favored    11   5.050     8  0.43    11  0.78  molprobity  1.000  
 4   4  tt0   -140.7  122.9  Favored     8   5.590     9  0.47    12  0.45  molprobity  1.000  
 5   5  m95   -126.8  108.2  Favored    10   5.510    16  0.66    23  0.75  molprobity  1.000  
 6   6  mt         ?      ?  ?          11   6.820     8  1.26     8  0.74  molprobity  1.000  
 7   7  tp         ?      ?  ?          13   5.950     8  0.86    11  0.91  molprobity  1.000  
 8   8  tp         ?      ?  ?          13   5.950     8  0.86    11  0.91  molprobity  1.000  
 9   9  t80   -136.5  126.2  Favored     8   6.000    13  0.68    18  0.89  molprobity  1.000  
10  10  mt    -132.0  131.5  Favored    11   5.690     8  0.53    11  0.72  molprobity  1.000  
11  11  tt0   -140.8  122.2  Favored     8   5.030     9  0.59    12  0.47  molprobity  1.000  
12  12  t90   -106.4  111.1  Favored    10   4.960    16  0.60    23  0.72  molprobity  1.000  
13  13  tp         ?      ?  ?          11   6.840     8  0.73     8  1.03  molprobity  1.000  
14  14  ?          ?      ?  ?           ?   5.400     6  0.64     9  0.68  mogul       1.000  
15  15  ?          ?      ?  ?           ?   5.400     6  0.58     9  0.68  mogul       1.000  
16  16  ?          ?      ?  ?           6  12.570     2  0.37     1  0.19  mogul       1.000  
17  17  ?          ?      ?  ?           6  10.340     2  0.47     1  0.05  mogul       1.010  
18  18  ?          ?      ?  ?           6  10.340     2  0.44     1  0.26  mogul       1.010  
19  19  ?          ?      ?  ?           ?   8.140     ?     ?     ?     ?  ?           1.000  
20  20  ?          ?      ?  ?           ?   7.870     ?     ?     ?     ?  ?           1.000  
21  21  ?          ?      ?  ?           ?   8.340     ?     ?     ?     ?  ?           1.000  
#
loop_
_pdbx_vrpt_instance_mogul_torsion_outliers.ordinal
_pdbx_vrpt_instance_mogul_torsion_outliers.instance_id
_pdbx_vrpt_instance_mogul_torsion_outliers.atom_1
_pdbx_vrpt_instance_mogul_torsion_outliers.atom_2
_pdbx_vrpt_instance_mogul_torsion_outliers.atom_3
_pdbx_vrpt_instance_mogul_torsion_outliers.atom_4
_pdbx_vrpt_instance_mogul_torsion_outliers.obsval
_pdbx_vrpt_instance_mogul_torsion_outliers.mean
_pdbx_vrpt_instance_mogul_torsion_outliers.numobs
_pdbx_vrpt_instance_mogul_torsion_outliers.stdev
_pdbx_vrpt_instance_mogul_torsion_outliers.mindiff
_pdbx_vrpt_instance_mogul_torsion_outliers.local_density
1  14  O    C1  C2  F3  176.30  87.85  1118  52.03  0.15  4.29  
2  14  OXT  C1  C2  F3   -2.85  88.97  1115  52.08  0.02  4.30  
#
loop_
_pdbx_vrpt_model_instance_density.ordinal
_pdbx_vrpt_model_instance_density.instance_id
_pdbx_vrpt_model_instance_density.natoms_eds
_pdbx_vrpt_model_instance_density.RSRCC
_pdbx_vrpt_model_instance_density.RSR
_pdbx_vrpt_model_instance_density.RSRZ
 1   1   8  0.984  0.058  -0.703  
 2   2  12  0.987  0.043  -0.976  
 3   3   8  0.980  0.060  -0.673  
 4   4   9  0.985  0.047  -0.851  
 5   5  14  0.974  0.059  -0.387  
 6   6   9  0.962  0.080   0.023  
 7   7  16  0.980  0.071  -0.274  
 8   8  16  0.980  0.071  -0.274  
 9   9  12  0.966  0.066  -0.177  
10  10   8  0.980  0.058  -0.745  
11  11   9  0.983  0.051  -0.777  
12  12  14  0.979  0.051  -0.683  
13  13   9  0.972  0.064  -0.505  
14  14  14  0.986  0.057       ?  
15  15  14  0.986  0.057       ?  
16  16   3  0.956  0.117       ?  
17  17   6  0.955  0.121       ?  
18  18   6  0.955  0.121       ?  
19  19   1  0.955  0.093       ?  
20  20   1  0.985  0.058       ?  
21  21   1  0.990  0.093       ?  
#
loop_
_pdbx_vrpt_software.ordinal
_pdbx_vrpt_software.name
_pdbx_vrpt_software.version
_pdbx_vrpt_software.success_y_or_n
1  molprobity   4.02b-467                                                             Y  
2  mogul        "1.8.4, CSD as541be (2020)"                                           Y  
3  eds          2.34                                                                  Y  
4  dcc          "2.26  (2020-01-20)"                                                  Y  
5  xtriage      1.13                                                                  Y  
6  percentiles  "20191225.v01 (using entries in the PDB archive December 25th 2019)"  Y  
##
