data_7X9F

_pdbx_vrpt_database.id    PDB
_pdbx_vrpt_database.code  7X9F
#
_pdbx_vrpt_exptl.ordinal  1
_pdbx_vrpt_exptl.method   x-ray
#
_pdbx_vrpt_summary.entry_id                    7X9F
_pdbx_vrpt_summary.PDB_deposition_date         2022-03-15
_pdbx_vrpt_summary.PDB_revision_number         4
_pdbx_vrpt_summary.PDB_revision_date           2024-07-10
_pdbx_vrpt_summary.report_creation_date        2024-07-04:03:26
_pdbx_vrpt_summary.attempted_validation_steps  molprobity,validation-pack,xtriage,eds,mogul,percentiles,writexml,writecif,writepdf
_pdbx_vrpt_summary.ligands_for_buster_report   N
#
loop_
_pdbx_vrpt_entity.id
_pdbx_vrpt_entity.type
_pdbx_vrpt_entity.description
1  polymer      "DNA (5'-D(P*AP*CP*GP*CP*GP*CP*T)-3')"  
2  polymer      "DNA (5'-D(P*AP*GP*CP*GP*CP*GP*T)-3')"  
3  polymer      DSN-ALA-N2C-MVA-DSN-ALA-NCY-MVA  
4  polymer      THR-DVA-PRO-SAR-MVA-PXF-THR-DVA-PRO-SAR-MVA  
5  non-polymer  2-CARBOXYQUINOXALINE  
6  non-polymer  "MANGANESE (II) ION"  
7  water        water  
#
loop_
_pdbx_vrpt_asym.label_asym_id
_pdbx_vrpt_asym.entity_id
A  1  
B  2  
C  3  
D  4  
E  1  
F  2  
G  4  
H  3  
I  5  
J  6  
K  5  
L  5  
M  5  
N  7  
O  7  
P  7  
#
loop_
_pdbx_vrpt_percentile_list.id
_pdbx_vrpt_percentile_list.range
_pdbx_vrpt_percentile_list.exp_method
1  all   x-ray  
2  2.96  x-ray  
#
loop_
_pdbx_vrpt_percentile_type.id
_pdbx_vrpt_percentile_type.type
1  all_atom_clashscore           
2  Ramachandran_outlier_percent  
3  rotamer_outliers_percent      
4  RSRZ_outliers_percent         
5  R_value_R_free                
#
loop_
_pdbx_vrpt_percentile_conditions.id
_pdbx_vrpt_percentile_conditions.percentile_list_id
_pdbx_vrpt_percentile_conditions.type_id
_pdbx_vrpt_percentile_conditions.rank
_pdbx_vrpt_percentile_conditions.number_entries_total
_pdbx_vrpt_percentile_conditions.res_high
_pdbx_vrpt_percentile_conditions.res_low
 1  1  1    2.54  141614     ?     ?  
 2  2  1   12.68    3462  2.92  3.00  
 3  1  2  100.00  138981     ?     ?  
 4  2  2  100.00    3340  2.92  3.00  
 5  1  3  100.00  138945     ?     ?  
 6  2  3  100.00    3343  2.92  3.00  
 7  1  4   57.00  127900     ?     ?  
 8  2  4   40.39    2986  2.92  3.00  
 9  1  5   19.18  130704     ?     ?  
10  2  5   49.58    3104  2.92  3.00  
#
loop_
_pdbx_vrpt_percentile_entity_view.ordinal
_pdbx_vrpt_percentile_entity_view.conditions_id
_pdbx_vrpt_percentile_entity_view.type_id
_pdbx_vrpt_percentile_entity_view.label_asym_id
_pdbx_vrpt_percentile_entity_view.PDB_model_num
_pdbx_vrpt_percentile_entity_view.entity_id
_pdbx_vrpt_percentile_entity_view.auth_asym_id
_pdbx_vrpt_percentile_entity_view.rank
 1  7  4  A  1  1  F  100.00  
 2  8  4  A  1  1  F  100.00  
 3  7  4  B  1  2  O  100.00  
 4  8  4  B  1  2  O  100.00  
 5  3  2  C  1  3  G  100.00  
 6  4  2  C  1  3  G  100.00  
 7  7  4  C  1  3  G  100.00  
 8  8  4  C  1  3  G  100.00  
 9  3  2  D  1  4  H  100.00  
10  4  2  D  1  4  H  100.00  
11  5  3  D  1  4  H  100.00  
12  6  3  D  1  4  H  100.00  
13  7  4  D  1  4  H  100.00  
14  8  4  D  1  4  H  100.00  
15  7  4  E  1  1  D    2.17  
16  8  4  E  1  1  D    1.17  
17  7  4  F  1  2  B  100.00  
18  8  4  F  1  2  B  100.00  
19  3  2  G  1  4  A  100.00  
20  4  2  G  1  4  A  100.00  
21  5  3  G  1  4  A  100.00  
22  6  3  G  1  4  A  100.00  
23  7  4  G  1  4  A  100.00  
24  8  4  G  1  4  A  100.00  
25  3  2  H  1  3  C  100.00  
26  4  2  H  1  3  C  100.00  
27  7  4  H  1  3  C  100.00  
28  8  4  H  1  3  C  100.00  
#
loop_
_pdbx_vrpt_summary_entity_geometry.ordinal
_pdbx_vrpt_summary_entity_geometry.PDB_model_num
_pdbx_vrpt_summary_entity_geometry.entity_id
_pdbx_vrpt_summary_entity_geometry.label_asym_id
_pdbx_vrpt_summary_entity_geometry.auth_asym_id
_pdbx_vrpt_summary_entity_geometry.angles_RMSZ
_pdbx_vrpt_summary_entity_geometry.bonds_RMSZ
_pdbx_vrpt_summary_entity_geometry.num_bonds_RMSZ
_pdbx_vrpt_summary_entity_geometry.num_angles_RMSZ
1  1  1  A  F  0.84  0.57  158  241  
2  1  2  B  O  0.99  0.61  162  248  
3  1  3  C  G  0.43  0.21    8    8  
4  1  4  D  H  0.59  0.28   26   30  
5  1  1  E  D  0.90  0.65  158  241  
6  1  2  F  B  0.88  0.57  162  248  
7  1  4  G  A  0.59  0.24   26   30  
8  1  3  H  C  0.25  0.13    8    8  
#
_pdbx_vrpt_summary_geometry.ordinal                        1
_pdbx_vrpt_summary_geometry.percent_ramachandran_outliers  0.00
_pdbx_vrpt_summary_geometry.percent_rotamer_outliers       0.00
_pdbx_vrpt_summary_geometry.clashscore                     36.11
_pdbx_vrpt_summary_geometry.num_H_reduce                   614
_pdbx_vrpt_summary_geometry.num_bonds_RMSZ                 708
_pdbx_vrpt_summary_geometry.bonds_RMSZ                     0.57
_pdbx_vrpt_summary_geometry.num_angles_RMSZ                1054
_pdbx_vrpt_summary_geometry.angles_RMSZ                    0.88
#
_pdbx_vrpt_summary_diffraction.exp_method                x-ray
_pdbx_vrpt_summary_diffraction.ordinal                   1
_pdbx_vrpt_summary_diffraction.Babinet_b                 162.369
_pdbx_vrpt_summary_diffraction.bulk_solvent_b            35.123
_pdbx_vrpt_summary_diffraction.Wilson_B_estimate         60.911
_pdbx_vrpt_summary_diffraction.I_over_sigma              2.77(2.95A)
_pdbx_vrpt_summary_diffraction.num_miller_indices        4174
_pdbx_vrpt_summary_diffraction.Babinet_k                 0.137
_pdbx_vrpt_summary_diffraction.bulk_solvent_k            0.331
_pdbx_vrpt_summary_diffraction.Padilla_Yeates_L_mean     0.478
_pdbx_vrpt_summary_diffraction.Padilla_Yeates_L2_mean    0.312
_pdbx_vrpt_summary_diffraction.Fo_Fc_correlation         0.926
_pdbx_vrpt_summary_diffraction.DCC_R                     0.22
_pdbx_vrpt_summary_diffraction.DCC_Rfree                 0.27
_pdbx_vrpt_summary_diffraction.EDS_R                     0.24
_pdbx_vrpt_summary_diffraction.EDS_res_high              2.96
_pdbx_vrpt_summary_diffraction.EDS_res_low               27.80
_pdbx_vrpt_summary_diffraction.Wilson_B_aniso            "[84.776,84.776,35.491,0.000,0.000,0.000]"
_pdbx_vrpt_summary_diffraction.data_anisotropy           0.721
_pdbx_vrpt_summary_diffraction.trans_NCS_details         "The largest off-origin peak in the Patterson function is 7.39% of the height of the origin peak. No significant pseudotranslation is detected."
_pdbx_vrpt_summary_diffraction.B_factor_type             FULL
_pdbx_vrpt_summary_diffraction.acentric_outliers         0
_pdbx_vrpt_summary_diffraction.centric_outliers          1
_pdbx_vrpt_summary_diffraction.data_completeness         99.36
_pdbx_vrpt_summary_diffraction.number_reflns_R_free      419
_pdbx_vrpt_summary_diffraction.percent_free_reflections  10.04
_pdbx_vrpt_summary_diffraction.percent_RSRZ_outliers     2.50
_pdbx_vrpt_summary_diffraction.PDB_resolution_high       2.96
_pdbx_vrpt_summary_diffraction.PDB_resolution_low        27.80
_pdbx_vrpt_summary_diffraction.PDB_R                     0.22
_pdbx_vrpt_summary_diffraction.PDB_Rfree                 0.27
#
loop_
_pdbx_vrpt_model_instance.id
_pdbx_vrpt_model_instance.PDB_model_num
_pdbx_vrpt_model_instance.entity_id
_pdbx_vrpt_model_instance.label_asym_id
_pdbx_vrpt_model_instance.label_seq_id
_pdbx_vrpt_model_instance.label_comp_id
_pdbx_vrpt_model_instance.auth_asym_id
_pdbx_vrpt_model_instance.auth_seq_id
_pdbx_vrpt_model_instance.label_alt_id
_pdbx_vrpt_model_instance.PDB_ins_code
_pdbx_vrpt_model_instance.count_clashes
_pdbx_vrpt_model_instance.count_mogul_bond_outliers
_pdbx_vrpt_model_instance.count_mogul_angle_outliers
_pdbx_vrpt_model_instance.count_mogul_torsion_outliers
 1  1  1  A   1  DA   F   -5  .  ?        1     ?     ?     ?  
 2  1  1  A   2  DC   F   -4  .  ?        1     ?     ?     ?  
 3  1  1  A   3  DG   F   -3  .  ?        1     ?     ?     ?  
 4  1  1  A   4  DC   F   -2  .  ?        1     ?     ?     ?  
 5  1  1  A   5  DG   F   -1  .  ?        ?     ?     ?     ?  
 6  1  1  A   6  DC   F    0  .  ?        ?     ?     ?     ?  
 7  1  1  A   7  DT   F    1  .  ?        ?     ?     ?     ?  
 8  1  2  B   1  DA   O   -5  .  ?        1     ?     ?     ?  
 9  1  2  B   2  DG   O   -4  .  ?        1     ?     ?     ?  
10  1  2  B   3  DC   O   -3  .  ?        1     ?     ?     ?  
11  1  2  B   4  DG   O   -2  .  ?        1     ?     ?     ?  
12  1  2  B   5  DC   O   -1  .  ?        ?     ?     ?     ?  
13  1  2  B   6  DG   O    0  .  ?        1     ?     ?     ?  
14  1  2  B   7  DT   O    1  .  ?        ?     ?     ?     ?  
15  1  3  C   1  DSN  G    1  .  ?        1     ?     ?     ?  
16  1  3  C   2  ALA  G    2  .  ?        ?     ?     ?     ?  
17  1  3  C   3  N2C  G    3  .  ?        ?     1     1     2  
18  1  3  C   4  MVA  G    4  .  ?        7     1     2     3  
19  1  3  C   5  DSN  G    5  .  ?        9     ?     ?     ?  
20  1  3  C   6  ALA  G    6  .  ?        1     ?     ?     ?  
21  1  3  C   7  NCY  G    7  .  ?        2     1     ?     ?  
22  1  3  C   8  MVA  G    8  .  ?        1     2     4     3  
23  1  4  D   1  THR  H    1  .  ?        5     ?     ?     ?  
24  1  4  D   2  DVA  H    2  .  ?        1     ?     ?     ?  
25  1  4  D   3  PRO  H    3  .  ?        1     ?     ?     ?  
26  1  4  D   4  SAR  H    4  .  ?        1     1     ?     1  
27  1  4  D   5  MVA  H    5  .  ?        4     1     1     5  
28  1  4  D   6  PXZ  H    6  .  ?        ?     ?     ?     ?  
29  1  4  D   7  THR  H    7  .  ?        3     ?     ?     ?  
30  1  4  D   8  DVA  H    8  .  ?        1     ?     ?     ?  
31  1  4  D   9  PRO  H    9  .  ?        2     ?     ?     ?  
32  1  4  D  10  SAR  H   10  .  ?        1     ?     1     1  
33  1  4  D  11  MVA  H   11  .  ?        3     1     ?     6  
34  1  1  E   1  DA   D   -5  .  ?        1     ?     ?     ?  
35  1  1  E   2  DC   D   -4  .  ?        1     ?     ?     ?  
36  1  1  E   3  DG   D   -3  .  ?        ?     ?     ?     ?  
37  1  1  E   4  DC   D   -2  .  ?        ?     ?     ?     ?  
38  1  1  E   5  DG   D   -1  .  ?        ?     ?     ?     ?  
39  1  1  E   6  DC   D    0  .  ?        ?     ?     ?     ?  
40  1  1  E   7  DT   D    1  .  ?        ?     ?     ?     ?  
41  1  2  F   1  DA   B   -5  .  ?        ?     ?     ?     ?  
42  1  2  F   2  DG   B   -4  .  ?        ?     ?     ?     ?  
43  1  2  F   3  DC   B   -3  .  ?        ?     ?     ?     ?  
44  1  2  F   4  DG   B   -2  .  ?        ?     ?     ?     ?  
45  1  2  F   5  DC   B   -1  .  ?        ?     ?     ?     ?  
46  1  2  F   6  DG   B    0  .  ?        ?     ?     ?     ?  
47  1  2  F   7  DT   B    1  .  ?        ?     ?     ?     ?  
48  1  4  G   1  THR  A    1  .  ?        4     ?     ?     ?  
49  1  4  G   2  DVA  A    2  .  ?        ?     ?     ?     ?  
50  1  4  G   3  PRO  A    3  .  ?        1     ?     ?     ?  
51  1  4  G   4  SAR  A    4  .  ?        1     1     1     1  
52  1  4  G   5  MVA  A    5  .  ?        3     1     ?     5  
53  1  4  G   6  PXZ  A    6  .  ?        1     ?     ?     ?  
54  1  4  G   7  THR  A    7  .  ?        4     ?     ?     ?  
55  1  4  G   8  DVA  A    8  .  ?        ?     ?     ?     ?  
56  1  4  G   9  PRO  A    9  .  ?        2     ?     ?     ?  
57  1  4  G  10  SAR  A   10  .  ?        1     ?     1     1  
58  1  4  G  11  MVA  A   11  .  ?        3     1     ?     5  
59  1  3  H   1  DSN  C    1  .  ?        1     ?     ?     ?  
60  1  3  H   2  ALA  C    2  .  ?        ?     ?     ?     ?  
61  1  3  H   3  N2C  C    3  .  ?        3     1     2     1  
62  1  3  H   4  MVA  C    4  .  ?        3     3     1     2  
63  1  3  H   5  DSN  C    5  .  ?        ?     ?     ?     ?  
64  1  3  H   6  ALA  C    6  .  ?        3     ?     ?     ?  
65  1  3  H   7  NCY  C    7  .  ?        4     2     3     1  
66  1  3  H   8  MVA  C    8  .  ?       10     4     2     2  
67  1  5  I   .  QUI  F  101  .  ?        9     2     5     ?  
68  1  6  J   .  MN   O  101  .  ?        1     ?     ?     ?  
69  1  5  K   .  QUI  G  101  .  ?        ?     1     4     ?  
70  1  5  L   .  QUI  C  101  .  ?        ?     2     6     ?  
71  1  5  M   .  QUI  C  102  .  ?        ?     2     4     ?  
72  1  7  N   .  HOH  F  201  .  ?        ?     ?     ?     ?  
73  1  7  N   .  HOH  F  202  .  ?        ?     ?     ?     ?  
74  1  7  O   .  HOH  O  201  .  ?        ?     ?     ?     ?  
75  1  7  O   .  HOH  O  202  .  ?        ?     ?     ?     ?  
76  1  7  O   .  HOH  O  203  .  ?        ?     ?     ?     ?  
77  1  7  O   .  HOH  O  204  .  ?        ?     ?     ?     ?  
78  1  7  P   .  HOH  D  101  .  ?        ?     ?     ?     ?  
#
loop_
_pdbx_vrpt_model_instance_geometry.ordinal
_pdbx_vrpt_model_instance_geometry.instance_id
_pdbx_vrpt_model_instance_geometry.rotamer_class
_pdbx_vrpt_model_instance_geometry.phi
_pdbx_vrpt_model_instance_geometry.psi
_pdbx_vrpt_model_instance_geometry.ramachandran_class
_pdbx_vrpt_model_instance_geometry.cis_peptide
_pdbx_vrpt_model_instance_geometry.num_H_reduce
_pdbx_vrpt_model_instance_geometry.OWAB
_pdbx_vrpt_model_instance_geometry.num_bonds_RMSZ
_pdbx_vrpt_model_instance_geometry.bonds_RMSZ
_pdbx_vrpt_model_instance_geometry.num_angles_RMSZ
_pdbx_vrpt_model_instance_geometry.angles_RMSZ
_pdbx_vrpt_model_instance_geometry.program_for_bond_angle_geometry
_pdbx_vrpt_model_instance_geometry.average_occupancy
 1   1  ?            ?      ?  ?        ?       11  108.140    24  0.52    37  0.96  molprobity  1.000  
 2   2  ?            ?      ?  ?        ?       11   95.710    21  0.73    32  0.95  molprobity  1.000  
 3   3  ?            ?      ?  ?        ?       11   86.520    25  0.55    39  0.51  molprobity  1.000  
 4   4  ?            ?      ?  ?        ?       11   86.540    21  0.50    32  0.70  molprobity  1.000  
 5   5  ?            ?      ?  ?        ?       11   76.210    25  0.36    39  0.68  molprobity  1.000  
 6   6  ?            ?      ?  ?        ?       11   75.890    21  0.55    32  0.61  molprobity  1.000  
 7   7  ?            ?      ?  ?        ?       13   75.240    21  0.71    30  1.31  molprobity  1.000  
 8   8  ?            ?      ?  ?        ?       11   79.330    24  0.51    37  1.16  molprobity  1.000  
 9   9  ?            ?      ?  ?        ?       11   57.420    25  0.47    39  0.75  molprobity  1.000  
10  10  ?            ?      ?  ?        ?       11   70.280    21  0.85    32  1.24  molprobity  1.000  
11  11  ?            ?      ?  ?        ?       11   65.230    25  0.68    39  0.86  molprobity  1.000  
12  12  ?            ?      ?  ?        ?       11   73.950    21  0.47    32  0.77  molprobity  1.000  
13  13  ?            ?      ?  ?        ?       11   76.540    25  0.66    39  0.79  molprobity  1.000  
14  14  ?            ?      ?  ?        ?       13   87.420    21  0.53    30  1.30  molprobity  1.000  
15  15  ?            ?      ?  ?        ?        3   57.070     ?     ?     ?     ?  ?           1.000  
16  16  ?        -80.1  151.4  Favored  ?        5   80.780     4  0.21     4  0.41  molprobity  1.000  
17  17  ?            ?      ?  ?        ?        8   74.110     6  1.15     5  2.30  mogul       1.000  
18  18  ?            ?      ?  ?        ?       11   73.310     6  2.29     7  1.93  mogul       1.000  
19  19  ?            ?      ?  ?        ?        5   90.660     ?     ?     ?     ?  ?           1.000  
20  20  ?        -83.6  144.3  Favored  ?        5   93.130     4  0.21     4  0.45  molprobity  1.000  
21  21  ?            ?      ?  ?        ?        6   67.640     5  1.18     5  1.08  mogul       1.000  
22  22  ?            ?      ?  ?        ?       11   62.380     6  2.79     7  6.13  mogul       1.000  
23  23  p            ?      ?  ?        ?        7   80.610     6  0.33     7  0.68  molprobity  1.000  
24  24  ?            ?      ?  ?        Y        9   74.450     ?     ?     ?     ?  ?           1.000  
25  25  Cg_endo  -80.5  140.4  Favored  Y        7   78.570     7  0.25     8  0.54  molprobity  1.000  
26  26  ?            ?      ?  ?        ?        5   93.750     4  1.48     1  1.84  mogul       1.000  
27  27  ?            ?      ?  ?        ?       11   83.760     6  2.23     7  1.18  mogul       1.000  
28  28  ?            ?      ?  ?        ?       10   66.760     ?     ?     ?     ?  ?           1.000  
29  29  p            ?      ?  ?        ?        6   65.500     6  0.37     7  0.68  molprobity  1.000  
30  30  ?            ?      ?  ?        Y        8   71.940     ?     ?     ?     ?  ?           1.000  
31  31  Cg_endo  -80.5  136.9  Favored  Y        7   79.740     7  0.15     8  0.44  molprobity  1.000  
32  32  ?            ?      ?  ?        ?        5   57.580     4  1.46     1  2.09  mogul       1.000  
33  33  ?            ?      ?  ?        ?       11   55.400     6  2.21     7  0.99  mogul       1.000  
34  34  ?            ?      ?  ?        ?       11  121.350    24  0.88    37  1.26  molprobity  1.000  
35  35  ?            ?      ?  ?        ?       11   86.950    21  0.69    32  0.78  molprobity  1.000  
36  36  ?            ?      ?  ?        ?       11   77.020    25  0.60    39  0.57  molprobity  1.000  
37  37  ?            ?      ?  ?        ?       11   72.800    21  0.46    32  0.72  molprobity  1.000  
38  38  ?            ?      ?  ?        ?       11   73.920    25  0.60    39  0.77  molprobity  1.000  
39  39  ?            ?      ?  ?        ?       11   67.760    21  0.48    32  0.65  molprobity  1.000  
40  40  ?            ?      ?  ?        ?       13   61.150    21  0.71    30  1.32  molprobity  1.000  
41  41  ?            ?      ?  ?        ?       11   90.000    24  0.79    37  1.01  molprobity  1.000  
42  42  ?            ?      ?  ?        ?       11   70.780    25  0.49    39  0.63  molprobity  1.000  
43  43  ?            ?      ?  ?        ?       11   71.250    21  0.45    32  0.60  molprobity  1.000  
44  44  ?            ?      ?  ?        ?       11   73.730    25  0.56    39  0.81  molprobity  1.000  
45  45  ?            ?      ?  ?        ?       11   80.650    21  0.43    32  0.74  molprobity  1.000  
46  46  ?            ?      ?  ?        ?       11   86.190    25  0.59    39  0.90  molprobity  1.000  
47  47  ?            ?      ?  ?        ?       13  119.750    21  0.59    30  1.34  molprobity  1.000  
48  48  p            ?      ?  ?        ?        7   69.270     6  0.29     7  0.60  molprobity  1.000  
49  49  ?            ?      ?  ?        Y        9   71.540     ?     ?     ?     ?  ?           1.000  
50  50  Cg_endo  -81.2  146.8  Favored  Y        7   75.170     7  0.15     8  0.40  molprobity  1.000  
51  51  ?            ?      ?  ?        ?        5   84.210     4  1.49     1  2.26  mogul       1.000  
52  52  ?            ?      ?  ?        ?       11   83.620     6  2.24     7  0.88  mogul       1.000  
53  53  ?            ?      ?  ?        ?       10   61.280     ?     ?     ?     ?  ?           1.000  
54  54  p            ?      ?  ?        ?        6   68.440     6  0.33     7  0.89  molprobity  1.000  
55  55  ?            ?      ?  ?        Y        8   73.910     ?     ?     ?     ?  ?           1.000  
56  56  Cg_endo  -83.3  144.9  Favored  Y        7   73.020     7  0.14     8  0.36  molprobity  1.000  
57  57  ?            ?      ?  ?        ?        5   58.640     4  1.41     1  2.10  mogul       1.000  
58  58  ?            ?      ?  ?        ?       11   64.790     6  2.25     7  0.96  mogul       1.000  
59  59  ?            ?      ?  ?        ?        2   54.210     ?     ?     ?     ?  ?           1.000  
60  60  ?        -73.8  147.8  Favored  ?        5   87.720     4  0.07     4  0.28  molprobity  1.000  
61  61  ?            ?      ?  ?        ?        8   76.040     6  1.27     5  2.28  mogul       1.000  
62  62  ?            ?      ?  ?        ?       11   79.340     6  3.79     7  3.60  mogul       1.000  
63  63  ?            ?      ?  ?        ?        4   92.290     ?     ?     ?     ?  ?           1.000  
64  64  ?        -62.1  144.1  Favored  ?        5   97.210     4  0.17     4  0.22  molprobity  1.000  
65  65  ?            ?      ?  ?        ?        6   66.510     5  2.47     5  2.75  mogul       1.000  
66  66  ?            ?      ?  ?        ?       11   64.680     6  5.37     7  2.92  mogul       1.000  
67  67  ?            ?      ?  ?        ?        5   51.210    13  1.95    17  1.72  mogul       1.000  
68  68  ?            ?      ?  ?        ?        ?   55.310     ?     ?     ?     ?  ?           0.500  
69  69  ?            ?      ?  ?        ?        5   46.080    13  1.01    17  1.67  mogul       1.000  
70  70  ?            ?      ?  ?        ?        5   67.340    13  2.38    17  2.95  mogul       1.000  
71  71  ?            ?      ?  ?        ?        5   67.960    13  3.03    17  1.61  mogul       1.000  
72  72  ?            ?      ?  ?        ?        ?   43.630     ?     ?     ?     ?  ?           1.000  
73  73  ?            ?      ?  ?        ?        ?   42.170     ?     ?     ?     ?  ?           1.000  
74  74  ?            ?      ?  ?        ?        ?   45.930     ?     ?     ?     ?  ?           1.000  
75  75  ?            ?      ?  ?        ?        ?   61.270     ?     ?     ?     ?  ?           1.000  
76  76  ?            ?      ?  ?        ?        ?   44.520     ?     ?     ?     ?  ?           1.000  
77  77  ?            ?      ?  ?        ?        ?   43.600     ?     ?     ?     ?  ?           1.000  
78  78  ?            ?      ?  ?        ?        ?   70.250     ?     ?     ?     ?  ?           0.500  
#
loop_
_pdbx_vrpt_instance_clashes.ordinal
_pdbx_vrpt_instance_clashes.instance_id
_pdbx_vrpt_instance_clashes.label_atom_id
_pdbx_vrpt_instance_clashes.cid
_pdbx_vrpt_instance_clashes.clashmag
_pdbx_vrpt_instance_clashes.dist
  1   1  "H2'"    1  0.50  1.94  
  2   2  "H4'"    2  0.41  2.21  
  3   3  OP1      2  0.41  2.21  
  4   4  "O4'"    3  0.55  2.07  
  5   8  "H1'"    4  0.48  2.48  
  6   9  C8       4  0.48  2.48  
  7  10  "H2''"   5  0.47  2.15  
  8  11  OP1      5  0.47  2.15  
  9  13  N7       6  0.71  1.62  
 10  15  HA       3  0.55  2.07  
 11  18  HN3      7  0.76  2.01  
 12  18  HN3      8  0.76  1.49  
 13  18  CG2      9  0.76  2.15  
 14  18  HG23    10  0.69  1.75  
 15  18  HG21     1  0.50  1.94  
 16  18  HG21    11  0.47  1.94  
 17  18  C       12  0.45  2.77  
 18  19  N       13  1.31  1.93  
 19  19  N        7  0.76  2.01  
 20  19  N       12  0.45  2.77  
 21  19  CA      14  1.13  2.24  
 22  19  CA      15  0.54  2.51  
 23  19  HA      16  0.97  1.92  
 24  19  HA      17  0.73  1.88  
 25  19  H2      18  0.81  1.89  
 26  19  H        8  0.76  1.49  
 27  20  HA      19  0.41  1.77  
 28  21  HA      20  0.42  1.89  
 29  21  HCN1    19  0.41  1.77  
 30  22  HN1     20  0.42  1.89  
 31  23  OG1     21  1.30  1.80  
 32  23  OG1     22  0.58  2.50  
 33  23  HG1     23  0.94  1.71  
 34  23  HG22    24  0.61  1.83  
 35  23  CB      25  0.55  2.83  
 36  24  HG23    26  0.46  1.95  
 37  25  HA      27  0.48  1.56  
 38  26  HA3     27  0.48  1.56  
 39  27  C       21  1.30  1.80  
 40  27  C       23  0.94  1.71  
 41  27  C       25  0.55  2.83  
 42  27  CA      22  0.58  2.50  
 43  29  OG1     28  1.26  1.81  
 44  29  HG1     29  1.01  1.64  
 45  29  CB      30  0.62  2.77  
 46  30  HG23    26  0.46  1.95  
 47  31  HD3     24  0.61  1.83  
 48  31  HA      31  0.49  1.51  
 49  32  HA3     31  0.49  1.51  
 50  33  C       28  1.26  1.81  
 51  33  C       29  1.01  1.64  
 52  33  C       30  0.62  2.77  
 53  34  "H4'"   32  0.61  1.82  
 54  35  "H5'"   32  0.61  1.82  
 55  48  OG1     33  1.29  1.81  
 56  48  OG1     34  0.57  2.51  
 57  48  CB      35  0.68  2.70  
 58  48  HG22    36  0.57  1.85  
 59  50  HA      37  0.41  1.71  
 60  51  HA3     37  0.41  1.71  
 61  52  C       33  1.29  1.81  
 62  52  C       35  0.68  2.70  
 63  52  CA      34  0.57  2.51  
 64  53  "O1'"   38  0.45  2.16  
 65  54  OG1     39  1.25  1.84  
 66  54  HG1     40  1.13  1.57  
 67  54  CB      41  0.67  2.72  
 68  54  HG23    38  0.45  2.16  
 69  56  HD3     36  0.57  1.85  
 70  56  HA      42  0.47  1.62  
 71  57  HA3     42  0.47  1.62  
 72  58  C       39  1.25  1.84  
 73  58  C       40  1.13  1.57  
 74  58  C       41  0.67  2.72  
 75  59  OG      43  0.62  2.00  
 76  61  SG      44  0.60  2.90  
 77  61  SG      45  0.59  2.43  
 78  61  HA      46  0.44  1.64  
 79  62  O       47  0.53  2.08  
 80  62  HG23    47  0.53  2.08  
 81  62  HN1     46  0.44  1.64  
 82  64  C       48  0.52  2.30  
 83  64  HA      49  0.43  1.70  
 84  64  O       50  0.42  2.20  
 85  65  CA      44  0.60  2.90  
 86  65  HA      45  0.59  2.43  
 87  65  N       51  0.53  2.22  
 88  65  HCN1    49  0.43  1.70  
 89  66  HG23    52  0.73  1.71  
 90  66  HG23    53  0.47  2.44  
 91  66  HN2     52  0.73  1.71  
 92  66  HN2     54  0.49  2.40  
 93  66  HN3     43  0.62  2.00  
 94  66  HN1     51  0.53  2.22  
 95  66  HN1     48  0.52  2.30  
 96  66  HN1     50  0.42  2.20  
 97  66  CG2     54  0.49  2.40  
 98  66  CN      53  0.47  2.44  
 99  67  C       13  1.31  1.93  
100  67  C       14  1.13  2.24  
101  67  C       16  0.97  1.92  
102  67  C       18  0.81  1.89  
103  67  H8       9  0.76  2.15  
104  67  H8      10  0.69  1.75  
105  67  H8      11  0.47  1.94  
106  67  O1      17  0.73  1.88  
107  67  O1      15  0.54  2.51  
108  68  MN       6  0.71  1.62  
#
loop_
_pdbx_vrpt_instance_mogul_bond_outliers.ordinal
_pdbx_vrpt_instance_mogul_bond_outliers.instance_id
_pdbx_vrpt_instance_mogul_bond_outliers.atom_1
_pdbx_vrpt_instance_mogul_bond_outliers.atom_2
_pdbx_vrpt_instance_mogul_bond_outliers.obsval
_pdbx_vrpt_instance_mogul_bond_outliers.mean
_pdbx_vrpt_instance_mogul_bond_outliers.numobs
_pdbx_vrpt_instance_mogul_bond_outliers.stdev
_pdbx_vrpt_instance_mogul_bond_outliers.Zscore
_pdbx_vrpt_instance_mogul_bond_outliers.mindiff
 1  17  CA   N   1.43  1.47     47  0.02  -2.34  0.00  
 2  18  O    C   1.42  1.19    304  0.04   5.58  0.09  
 3  21  CB   SG  1.76  1.81    136  0.02  -2.22  0.01  
 4  22  CA   N   1.41  1.47     47  0.02  -3.57  0.01  
 5  22  O    C   1.41  1.19    304  0.04   5.45  0.09  
 6  26  CA   N   1.43  1.46     41  0.01  -2.10  0.00  
 7  27  O    C   1.41  1.19    304  0.04   5.37  0.09  
 8  33  O    C   1.41  1.19    304  0.04   5.38  0.09  
 9  51  CA   N   1.43  1.46     41  0.01  -2.14  0.00  
10  52  O    C   1.41  1.19    304  0.04   5.46  0.09  
11  58  O    C   1.41  1.19    304  0.04   5.48  0.09  
12  61  CA   N   1.42  1.47     47  0.02  -2.53  0.01  
13  62  CA   N   1.60  1.47     47  0.02   7.31  0.09  
14  62  CB   CA  1.50  1.54     26  0.02  -2.45  0.02  
15  62  O    C   1.40  1.19    304  0.04   5.11  0.08  
16  65  CB   SG  1.77  1.81    136  0.02  -2.13  0.01  
17  65  O    C   1.39  1.19    304  0.04   5.00  0.07  
18  66  CA   N   1.31  1.47     47  0.02  -9.09  0.09  
19  66  CB   CA  1.42  1.54     26  0.02  -6.73  0.09  
20  66  CG2  CB  1.39  1.52  10000  0.04  -3.79  0.00  
21  66  O    C   1.41  1.19    304  0.04   5.48  0.09  
22  67  C2   C   1.51  1.48     47  0.01   2.43  0.00  
23  67  O1   C   1.41  1.21   3761  0.03   5.71  0.00  
24  69  C10  C9  1.38  1.42   2926  0.02  -2.02  0.00  
25  70  C2   C   1.56  1.48     47  0.01   7.66  0.06  
26  70  C10  C9  1.38  1.42   2926  0.02  -2.06  0.00  
27  71  C2   C   1.38  1.48     47  0.01  -9.61  0.06  
28  71  O1   C   1.34  1.21   3761  0.03   3.89  0.00  
#
loop_
_pdbx_vrpt_instance_mogul_angle_outliers.ordinal
_pdbx_vrpt_instance_mogul_angle_outliers.instance_id
_pdbx_vrpt_instance_mogul_angle_outliers.atom_1
_pdbx_vrpt_instance_mogul_angle_outliers.atom_2
_pdbx_vrpt_instance_mogul_angle_outliers.atom_3
_pdbx_vrpt_instance_mogul_angle_outliers.obsval
_pdbx_vrpt_instance_mogul_angle_outliers.mean
_pdbx_vrpt_instance_mogul_angle_outliers.numobs
_pdbx_vrpt_instance_mogul_angle_outliers.stdev
_pdbx_vrpt_instance_mogul_angle_outliers.Zscore
_pdbx_vrpt_instance_mogul_angle_outliers.mindiff
 1  17  CD   SG  CB   109.76  101.30   77  1.84   4.60   0.01  
 2  18  CB   CA  N    116.39  111.17   23  1.30   4.01   2.18  
 3  18  O    C   CA   117.94  124.83   80  2.79  -2.47   0.48  
 4  22  CB   CA  N    122.67  111.17   23  1.30   8.83   8.45  
 5  22  CG1  CB  CA    96.50  111.21   52  1.53  -9.60  10.35  
 6  22  CG2  CB  CA   122.12  111.21   52  1.53   7.13   6.99  
 7  22  O    C   CA   107.51  124.83   80  2.79  -6.21   9.94  
 8  27  CB   CA  C    110.34  113.04   28  1.25  -2.15   0.83  
 9  32  O    C   CA   119.36  125.42   74  2.89  -2.09   1.28  
10  51  O    C   CA   118.87  125.42   74  2.89  -2.26   0.78  
11  57  O    C   CA   119.35  125.42   74  2.89  -2.10   1.27  
12  61  CA   CB  SG   108.75  114.04   26  1.62  -3.27   0.71  
13  61  CD   SG  CB   107.79  101.30   77  1.84   3.53   1.97  
14  62  CB   CA  N    122.89  111.17   23  1.30   9.00   8.68  
15  65  CB   CA  N    107.59  111.19   36  1.46  -2.46   1.02  
16  65  CA   CB  SG   111.01  114.19   34  1.12  -2.83   0.08  
17  65  O    C   CA   112.05  124.78   82  2.62  -4.86   5.40  
18  66  CB   CA  N    117.63  111.17   23  1.30   4.96   3.42  
19  66  O    C   CA   108.69  124.83   80  2.79  -5.79   8.76  
20  67  C2   N1  C9   120.03  117.83  162  0.91   2.42   0.07  
21  67  C3   C2  N1   119.29  121.25   23  0.67  -2.94   0.99  
22  67  C3   C2  C    124.90  121.85   23  0.88   3.46   1.23  
23  67  C2   C3  N4   120.99  123.63   26  0.78  -3.37   1.37  
24  67  C3   N4  C10  119.64  116.91  632  1.20   2.26   0.05  
25  69  C2   N1  C9   119.92  117.83  162  0.91   2.30   0.04  
26  69  C3   C2  C    124.33  121.85   23  0.88   2.81   0.66  
27  69  C2   C3  N4   120.10  123.63   26  0.78  -4.50   2.26  
28  69  C3   N4  C10  119.80  116.91  632  1.20   2.40   0.04  
29  70  C2   N1  C9   119.98  117.83  162  0.91   2.37   0.03  
30  70  C    C2  N1   110.55  114.66   22  0.98  -4.19   2.95  
31  70  C3   C2  C    129.27  121.85   23  0.88   8.42   5.60  
32  70  C2   C3  N4   119.84  123.63   26  0.78  -4.83   2.52  
33  70  C3   N4  C10  119.90  116.91  632  1.20   2.48   0.11  
34  70  O1   C   C2   120.20  124.22   47  0.95  -4.25   1.48  
35  71  C2   N1  C9   119.79  117.83  162  0.91   2.16   0.01  
36  71  C    C2  N1   116.78  114.66   22  0.98   2.17   0.11  
37  71  C2   C3  N4   119.98  123.63   26  0.78  -4.65   2.38  
38  71  C3   N4  C10  119.78  116.91  632  1.20   2.39   0.02  
#
loop_
_pdbx_vrpt_instance_mogul_torsion_outliers.ordinal
_pdbx_vrpt_instance_mogul_torsion_outliers.instance_id
_pdbx_vrpt_instance_mogul_torsion_outliers.atom_1
_pdbx_vrpt_instance_mogul_torsion_outliers.atom_2
_pdbx_vrpt_instance_mogul_torsion_outliers.atom_3
_pdbx_vrpt_instance_mogul_torsion_outliers.atom_4
_pdbx_vrpt_instance_mogul_torsion_outliers.obsval
_pdbx_vrpt_instance_mogul_torsion_outliers.mean
_pdbx_vrpt_instance_mogul_torsion_outliers.numobs
_pdbx_vrpt_instance_mogul_torsion_outliers.stdev
_pdbx_vrpt_instance_mogul_torsion_outliers.mindiff
_pdbx_vrpt_instance_mogul_torsion_outliers.local_density
 1  17  N   CA  CB  SG    -33.84  49.28  93  43.52   3.07  2.15  
 2  17  CA  CB  SG  CD    116.61  42.09  58  11.83  16.58  0.00  
 3  18  CB  CA  N   CN    -68.23  90.20  31  21.64   4.47  3.23  
 4  18  N   CA  CB  CG1   -41.87  57.48  46  55.00   9.31  2.17  
 5  18  N   CA  CB  CG2    85.78  48.06  46  29.98  15.47  0.00  
 6  22  CB  CA  N   CN    -79.19  79.95  31  18.98  15.42  0.00  
 7  22  N   CA  CB  CG1   -29.16  70.19  46  55.00  22.01  0.00  
 8  22  N   CA  CB  CG2    88.99  49.04  46  26.96  18.69  0.00  
 9  26  C   CA  N   CN     79.31  90.21  24  14.40  27.30  0.00  
10  27  CB  CA  N   CN    103.30  57.94  31  12.90   5.13  3.23  
11  27  N   CA  CB  CG1    95.93  51.15  46  20.49  25.63  0.00  
12  27  N   CA  CB  CG2  -140.08  64.59  46  22.63  29.49  0.00  
13  27  C   CA  CB  CG1   -32.77  79.52  48  57.00  17.30  0.00  
14  27  C   CA  CB  CG2    91.22  54.89  48  26.07  23.25  0.00  
15  32  C   CA  N   CN     75.19  93.99  24  15.98  23.18  0.00  
16  33  CB  CA  N   CN     99.64  61.12  31  14.23   1.47  3.23  
17  33  N   CA  CB  CG1    89.84  49.30  46  26.16  19.54  0.00  
18  33  N   CA  CB  CG2  -145.38  66.20  46  27.58  24.19  0.00  
19  33  C   CA  CB  CG1   -38.62  73.67  48  57.00  11.45  0.00  
20  33  C   CA  CB  CG2    86.16  54.47  48  31.05  18.20  0.00  
21  33  O   C   CA  CB    -51.29  59.44  25  33.47   9.04  4.00  
22  51  C   CA  N   CN     90.59  79.87  24  10.19  38.59  0.00  
23  52  CB  CA  N   CN     97.96  62.58  31  14.87   0.21  3.23  
24  52  N   CA  CB  CG1    84.60  47.70  46  31.09  14.30  0.00  
25  52  N   CA  CB  CG2  -149.93  67.59  46  31.86  19.64  0.00  
26  52  C   CA  CB  CG2    80.57  54.01  48  36.59  12.60  0.00  
27  52  O   C   CA  CB    -42.96  61.93  25  38.32   0.71  4.00  
28  57  C   CA  N   CN     81.82  87.92  24  13.45  29.81  0.00  
29  58  CB  CA  N   CN    100.63  60.26  31  13.86   2.46  3.23  
30  58  N   CA  CB  CG1    89.48  49.19  46  26.50  19.18  0.00  
31  58  N   CA  CB  CG2  -144.60  65.97  46  26.85  24.96  0.00  
32  58  C   CA  CB  CG1   -40.21  72.08  48  57.00   9.86  2.08  
33  58  C   CA  CB  CG2    85.70  54.43  48  31.51  17.74  0.00  
34  61  CA  CB  SG  CD    131.46  53.35  58  11.27  29.24  0.00  
35  62  CB  CA  N   CN    -82.76  76.61  31  18.21  15.41  0.00  
36  62  N   CA  CB  CG1   -44.03  55.32  46  55.00   7.15  4.35  
37  65  N   CA  CB  SG    -84.03  20.23  35  12.45  11.02  0.00  
38  66  CB  CA  N   CN    -83.97  75.48  31  17.96  14.20  0.00  
39  66  C   CA  CB  CG1   160.75  60.69  48  43.76   7.63  4.17  
#
loop_
_pdbx_vrpt_model_instance_density.ordinal
_pdbx_vrpt_model_instance_density.instance_id
_pdbx_vrpt_model_instance_density.natoms_eds
_pdbx_vrpt_model_instance_density.RSRCC
_pdbx_vrpt_model_instance_density.RSR
_pdbx_vrpt_model_instance_density.RSRZ
 1   1  21  0.938  0.242   0.852  
 2   2  19  0.947  0.208   0.264  
 3   3  22  0.956  0.146  -0.530  
 4   4  19  0.962  0.152  -0.478  
 5   5  22  0.964  0.166  -0.234  
 6   6  19  0.937  0.181  -0.094  
 7   7  20  0.959  0.156  -0.454  
 8   8  21  0.949  0.221   0.552  
 9   9  22  0.967  0.144  -0.560  
10  10  19  0.933  0.196   0.105  
11  11  22  0.966  0.154  -0.412  
12  12  19  0.952  0.171  -0.226  
13  13  22  0.948  0.191   0.136  
14  14  20  0.928  0.200   0.099  
15  15   6  0.887  0.267       ?  
16  16   5  0.968  0.267   1.031  
17  17   8  0.955  0.223       ?  
18  18   8  0.945  0.306       ?  
19  19   6  0.927  0.204       ?  
20  20   5  0.927  0.199   0.189  
21  21   7  0.952  0.195       ?  
22  22   8  0.860  0.370       ?  
23  23   7  0.928  0.179  -0.064  
24  24   7  0.938  0.318       ?  
25  25   7  0.921  0.267   1.067  
26  26   5  0.961  0.279       ?  
27  27   8  0.934  0.368       ?  
28  28  22  0.950  0.184       ?  
29  29   7  0.940  0.177  -0.091  
30  30   7  0.943  0.269       ?  
31  31   7  0.958  0.305   1.553  
32  32   5  0.970  0.184       ?  
33  33   8  0.955  0.215       ?  
34  34  21  0.758  0.355   2.471  
35  35  19  0.911  0.203   0.197  
36  36  22  0.945  0.179  -0.041  
37  37  19  0.906  0.186  -0.028  
38  38  22  0.919  0.211   0.433  
39  39  19  0.964  0.147  -0.544  
40  40  20  0.967  0.162  -0.378  
41  41  21  0.871  0.259   1.096  
42  42  22  0.934  0.177  -0.071  
43  43  19  0.927  0.184  -0.054  
44  44  22  0.920  0.185   0.047  
45  45  19  0.928  0.188  -0.001  
46  46  22  0.941  0.171  -0.160  
47  47  20  0.841  0.334   1.783  
48  48   7  0.964  0.190   0.086  
49  49   7  0.940  0.239       ?  
50  50   7  0.955  0.253   0.887  
51  51   5  0.961  0.251       ?  
52  52   8  0.918  0.429       ?  
53  53  22  0.946  0.191       ?  
54  54   7  0.910  0.219   0.480  
55  55   7  0.921  0.318       ?  
56  56   7  0.933  0.202   0.234  
57  57   5  0.958  0.199       ?  
58  58   8  0.938  0.277       ?  
59  59   6  0.891  0.177       ?  
60  60   5  0.939  0.133  -0.627  
61  61   8  0.929  0.208       ?  
62  62   8  0.857  0.310       ?  
63  63   6  0.902  0.175       ?  
64  64   5  0.947  0.234   0.623  
65  65   7  0.953  0.255       ?  
66  66   8  0.809  0.320       ?  
67  67  12  0.919  0.294       ?  
68  68   1  0.964  0.170       ?  
69  69  12  0.973  0.245       ?  
70  70  12  0.939  0.195       ?  
71  71  12  0.945  0.228       ?  
72  72   1  0.875  0.577       ?  
73  73   1  0.880  0.630       ?  
74  74   1  0.831  0.401       ?  
75  75   1  0.573  0.518       ?  
76  76   1  0.931  0.199       ?  
77  77   1  0.648  0.519       ?  
78  78   1  0.653  2.375       ?  
#
loop_
_pdbx_vrpt_software.ordinal
_pdbx_vrpt_software.name
_pdbx_vrpt_software.version
_pdbx_vrpt_software.success_y_or_n
1  molprobity   4.02b-467                                                             Y  
2  mogul        "1.8.5 (274361), CSD as541be (2020)"                                  Y  
3  eds          2.37.1                                                                Y  
4  dcc          '"2.27  (2023-04-10)"'                                                Y  
5  xtriage      1.13                                                                  Y  
6  percentiles  "20191225.v01 (using entries in the PDB archive December 25th 2019)"  Y  
##
