data_7SNC

_pdbx_vrpt_database.id    PDB
_pdbx_vrpt_database.code  7SNC
#
_pdbx_vrpt_exptl.ordinal  1
_pdbx_vrpt_exptl.method   x-ray
#
_pdbx_vrpt_summary.entry_id                    7SNC
_pdbx_vrpt_summary.PDB_deposition_date         2021-10-27
_pdbx_vrpt_summary.PDB_revision_number         2
_pdbx_vrpt_summary.PDB_revision_date           2023-10-18
_pdbx_vrpt_summary.report_creation_date        2023-10-10:07:40
_pdbx_vrpt_summary.attempted_validation_steps  molprobity,validation-pack,xtriage,eds,percentiles,writexml,writecif,writepdf
_pdbx_vrpt_summary.ligands_for_buster_report   N
#
loop_
_pdbx_vrpt_entity.id
_pdbx_vrpt_entity.type
_pdbx_vrpt_entity.description
1  polymer  "Protease inhibitor"  
2  water    water  
#
loop_
_pdbx_vrpt_asym.label_asym_id
_pdbx_vrpt_asym.entity_id
A  1  
B  2  
#
loop_
_pdbx_vrpt_percentile_list.id
_pdbx_vrpt_percentile_list.range
_pdbx_vrpt_percentile_list.exp_method
1  all  x-ray  
2  2.5  x-ray  
#
loop_
_pdbx_vrpt_percentile_type.id
_pdbx_vrpt_percentile_type.type
1  all_atom_clashscore           
2  Ramachandran_outlier_percent  
3  rotamer_outliers_percent      
4  R_value_R_free                
#
loop_
_pdbx_vrpt_percentile_conditions.id
_pdbx_vrpt_percentile_conditions.percentile_list_id
_pdbx_vrpt_percentile_conditions.type_id
_pdbx_vrpt_percentile_conditions.rank
_pdbx_vrpt_percentile_conditions.number_entries_total
_pdbx_vrpt_percentile_conditions.res_high
_pdbx_vrpt_percentile_conditions.res_low
1  1  1   87.70  141614     ?     ?  
2  2  1   94.15    5346  2.50  2.50  
3  1  2  100.00  138981     ?     ?  
4  2  2  100.00    5231  2.50  2.50  
5  1  3   37.58  138945     ?     ?  
6  2  3   64.02    5233  2.50  2.50  
7  1  4   27.11  130704     ?     ?  
8  2  4   46.19    4661  2.50  2.50  
#
loop_
_pdbx_vrpt_percentile_entity_view.ordinal
_pdbx_vrpt_percentile_entity_view.conditions_id
_pdbx_vrpt_percentile_entity_view.type_id
_pdbx_vrpt_percentile_entity_view.label_asym_id
_pdbx_vrpt_percentile_entity_view.PDB_model_num
_pdbx_vrpt_percentile_entity_view.entity_id
_pdbx_vrpt_percentile_entity_view.auth_asym_id
_pdbx_vrpt_percentile_entity_view.rank
1  3  2  A  1  1  A  100.00  
2  4  2  A  1  1  A  100.00  
3  5  3  A  1  1  A   37.58  
4  6  3  A  1  1  A   64.02  
#
_pdbx_vrpt_summary_entity_geometry.ordinal          1
_pdbx_vrpt_summary_entity_geometry.PDB_model_num    1
_pdbx_vrpt_summary_entity_geometry.entity_id        1
_pdbx_vrpt_summary_entity_geometry.label_asym_id    A
_pdbx_vrpt_summary_entity_geometry.auth_asym_id     A
_pdbx_vrpt_summary_entity_geometry.angles_RMSZ      1.00
_pdbx_vrpt_summary_entity_geometry.bonds_RMSZ       0.78
_pdbx_vrpt_summary_entity_geometry.num_bonds_RMSZ   268
_pdbx_vrpt_summary_entity_geometry.num_angles_RMSZ  359
#
_pdbx_vrpt_summary_geometry.ordinal                        1
_pdbx_vrpt_summary_geometry.percent_ramachandran_outliers  0.00
_pdbx_vrpt_summary_geometry.percent_rotamer_outliers       3.33
_pdbx_vrpt_summary_geometry.clashscore                     1.97
_pdbx_vrpt_summary_geometry.num_H_reduce                   243
_pdbx_vrpt_summary_geometry.num_bonds_RMSZ                 268
_pdbx_vrpt_summary_geometry.bonds_RMSZ                     0.78
_pdbx_vrpt_summary_geometry.num_angles_RMSZ                359
_pdbx_vrpt_summary_geometry.angles_RMSZ                    1.00
#
_pdbx_vrpt_summary_diffraction.exp_method                x-ray
_pdbx_vrpt_summary_diffraction.ordinal                   1
_pdbx_vrpt_summary_diffraction.Babinet_b                 69.867
_pdbx_vrpt_summary_diffraction.bulk_solvent_b            22.424
_pdbx_vrpt_summary_diffraction.Wilson_B_estimate         21.622
_pdbx_vrpt_summary_diffraction.I_over_sigma              17.21(2.08A)
_pdbx_vrpt_summary_diffraction.num_miller_indices        2263
_pdbx_vrpt_summary_diffraction.Babinet_k                 0.389
_pdbx_vrpt_summary_diffraction.bulk_solvent_k            0.328
_pdbx_vrpt_summary_diffraction.Padilla_Yeates_L_mean     0.481
_pdbx_vrpt_summary_diffraction.Padilla_Yeates_L2_mean    0.322
_pdbx_vrpt_summary_diffraction.Fo_Fc_correlation         0.898
_pdbx_vrpt_summary_diffraction.DCC_R                     0.23
_pdbx_vrpt_summary_diffraction.DCC_Rfree                 0.26
_pdbx_vrpt_summary_diffraction.EDS_R                     0.27
_pdbx_vrpt_summary_diffraction.EDS_res_high              2.08
_pdbx_vrpt_summary_diffraction.EDS_res_low               23.20
_pdbx_vrpt_summary_diffraction.Wilson_B_aniso            "[21.778,20.061,23.177,0.000,0.000,0.000]"
_pdbx_vrpt_summary_diffraction.data_anisotropy           0.144
_pdbx_vrpt_summary_diffraction.trans_NCS_details         "The largest off-origin peak in the Patterson function is 16.98% of the height of the origin peak. No significant pseudotranslation is detected."
_pdbx_vrpt_summary_diffraction.B_factor_type             FULL
_pdbx_vrpt_summary_diffraction.acentric_outliers         0
_pdbx_vrpt_summary_diffraction.centric_outliers          0
_pdbx_vrpt_summary_diffraction.data_completeness         98.14
_pdbx_vrpt_summary_diffraction.number_reflns_R_free      121
_pdbx_vrpt_summary_diffraction.percent_free_reflections  5.35
_pdbx_vrpt_summary_diffraction.PDB_resolution_high       2.50
_pdbx_vrpt_summary_diffraction.PDB_resolution_low        23.21
_pdbx_vrpt_summary_diffraction.PDB_R                     0.21
_pdbx_vrpt_summary_diffraction.PDB_Rfree                 0.28
#
loop_
_pdbx_vrpt_model_instance.id
_pdbx_vrpt_model_instance.PDB_model_num
_pdbx_vrpt_model_instance.entity_id
_pdbx_vrpt_model_instance.label_asym_id
_pdbx_vrpt_model_instance.label_seq_id
_pdbx_vrpt_model_instance.label_comp_id
_pdbx_vrpt_model_instance.auth_asym_id
_pdbx_vrpt_model_instance.auth_seq_id
_pdbx_vrpt_model_instance.label_alt_id
_pdbx_vrpt_model_instance.PDB_ins_code
_pdbx_vrpt_model_instance.count_clashes
_pdbx_vrpt_model_instance.count_symm_clashes
 1  1  1  A   1  GLY  A   -1  .  ?        ?     ?  
 2  1  1  A   2  SER  A    0  .  ?        ?     ?  
 3  1  1  A   3  SER  A    1  .  ?        ?     ?  
 4  1  1  A   4  CYS  A    2  .  ?        ?     ?  
 5  1  1  A   5  THR  A    3  .  ?        ?     ?  
 6  1  1  A   6  PRO  A    4  .  ?        ?     ?  
 7  1  1  A   7  GLY  A    5  .  ?        ?     ?  
 8  1  1  A   8  ALA  A    6  .  ?        ?     ?  
 9  1  1  A   9  THR  A    7  .  ?        ?     ?  
10  1  1  A  10  PHE  A    8  .  ?        ?     ?  
11  1  1  A  11  ARG  A    9  .  ?        ?     ?  
12  1  1  A  12  ASN  A   10  .  ?        ?     ?  
13  1  1  A  13  ARG  A   11  .  ?        ?     ?  
14  1  1  A  14  CYS  A   12  .  ?        ?     ?  
15  1  1  A  15  ASN  A   13  .  ?        ?     ?  
16  1  1  A  16  THR  A   14  .  ?        ?     ?  
17  1  1  A  17  CYS  A   15  .  ?        ?     ?  
18  1  1  A  18  ARG  A   16  .  ?        ?     ?  
19  1  1  A  19  CYS  A   17  .  ?        1     ?  
20  1  1  A  20  GLY  A   18  .  ?        ?     ?  
21  1  1  A  21  SER  A   19  .  ?        ?     ?  
22  1  1  A  22  ASN  A   20  .  ?        ?     ?  
23  1  1  A  23  GLY  A   21  .  ?        1     ?  
24  1  1  A  24  ARG  A   22  .  ?        ?     ?  
25  1  1  A  25  SER  A   23  .  ?        ?     ?  
26  1  1  A  26  ALA  A   24  .  ?        ?     ?  
27  1  1  A  27  SER  A   25  .  ?        ?     ?  
28  1  1  A  28  CYS  A   26  .  ?        ?     ?  
29  1  1  A  29  THR  A   27  .  ?        ?     ?  
30  1  1  A  30  LEU  A   28  .  ?        ?     ?  
31  1  1  A  31  MET  A   29  .  ?        ?     ?  
32  1  1  A  32  ALA  A   30  .  ?        ?     ?  
33  1  1  A  33  CYS  A   31  .  ?        ?     ?  
34  1  1  A  34  PRO  A   32  .  ?        ?     ?  
35  1  1  A  35  PRO  A   33  .  ?        ?     ?  
36  1  1  A  36  GLY  A   34  .  ?        ?     ?  
37  1  1  A  37  SER  A   35  .  ?        ?     ?  
38  1  1  A  38  TYR  A   36  .  ?        ?     ?  
39  1  2  B   .  HOH  A  101  .  ?        ?     ?  
40  1  2  B   .  HOH  A  102  .  ?        ?     ?  
41  1  2  B   .  HOH  A  103  .  ?        ?     ?  
42  1  2  B   .  HOH  A  104  .  ?        ?     ?  
43  1  2  B   .  HOH  A  105  .  ?        ?     ?  
44  1  2  B   .  HOH  A  106  .  ?        ?     2  
45  1  2  B   .  HOH  A  107  .  ?        ?     ?  
46  1  2  B   .  HOH  A  108  .  ?        ?     ?  
47  1  2  B   .  HOH  A  109  .  ?        ?     ?  
48  1  2  B   .  HOH  A  110  .  ?        ?     ?  
49  1  2  B   .  HOH  A  111  .  ?        ?     ?  
50  1  2  B   .  HOH  A  112  .  ?        ?     ?  
51  1  2  B   .  HOH  A  113  .  ?        ?     ?  
52  1  2  B   .  HOH  A  114  .  ?        ?     ?  
53  1  2  B   .  HOH  A  115  .  ?        ?     ?  
54  1  2  B   .  HOH  A  116  .  ?        ?     ?  
#
loop_
_pdbx_vrpt_model_instance_geometry.ordinal
_pdbx_vrpt_model_instance_geometry.instance_id
_pdbx_vrpt_model_instance_geometry.rotamer_class
_pdbx_vrpt_model_instance_geometry.phi
_pdbx_vrpt_model_instance_geometry.psi
_pdbx_vrpt_model_instance_geometry.ramachandran_class
_pdbx_vrpt_model_instance_geometry.num_H_reduce
_pdbx_vrpt_model_instance_geometry.num_bonds_RMSZ
_pdbx_vrpt_model_instance_geometry.bonds_RMSZ
_pdbx_vrpt_model_instance_geometry.num_angles_RMSZ
_pdbx_vrpt_model_instance_geometry.angles_RMSZ
_pdbx_vrpt_model_instance_geometry.program_for_bond_angle_geometry
 1   1  ?             ?       ?  ?         5   4  2.24   5  1.71  molprobity  
 2   2  t         -92.7    39.7  Allowed   5   6  1.05   8  0.83  molprobity  
 3   3  p        -148.7   154.9  Favored   5   6  0.74   8  1.14  molprobity  
 4   4  p        -146.5   168.9  Favored   4   6  1.03   8  0.73  molprobity  
 5   5  m         -74.1   110.8  Favored   7   7  0.76  11  0.71  molprobity  
 6   6  Cg_exo    -50.1   127.3  Favored   7   8  0.36  11  0.62  molprobity  
 7   7  ?          85.0    -2.0  Favored   3   4  0.64   5  0.80  molprobity  
 8   8  ?         -90.6   148.9  Favored   5   5  0.84   7  0.49  molprobity  
 9   9  p         -78.7   146.0  Favored   7   7  0.66  10  0.77  molprobity  
10  10  p90      -136.2   160.9  Favored   9  12  0.52  16  0.78  molprobity  
11  11  OUTLIER   -94.0   135.5  Favored  13  11  0.73  14  1.47  molprobity  
12  12  t-20     -118.5   101.3  Favored   6   8  0.70  11  0.75  molprobity  
13  13  mtm180     52.6  -128.0  Favored  13  11  0.56  14  1.65  molprobity  
14  14  p         -78.9    -8.6  Favored   4   6  1.06   8  0.68  molprobity  
15  15  m-20      -96.6   139.3  Favored   6   8  0.75  11  0.59  molprobity  
16  16  t        -103.2   132.1  Favored   7   7  0.40  10  1.44  molprobity  
17  17  m        -116.7   155.5  Favored   4   6  0.75   8  0.53  molprobity  
18  18  ttm-85   -126.8   122.7  Favored  13  11  1.04  14  1.72  molprobity  
19  19  t         -63.2   137.1  Favored   4   6  0.41   8  0.98  molprobity  
20  20  ?         -67.0   167.6  Favored   3   4  0.64   5  1.18  molprobity  
21  21  p         -65.2   -24.9  Favored   5   6  0.91   8  0.72  molprobity  
22  22  p30       -83.6   -10.1  Favored   6   8  0.71  11  0.91  molprobity  
23  23  ?          58.1    24.2  Favored   3   4  1.05   5  0.92  molprobity  
24  24  mtm105   -130.0    15.8  Favored  13  11  0.61  14  1.25  molprobity  
25  25  p        -155.8   147.5  Favored   5   6  0.99   8  0.86  molprobity  
26  26  ?        -132.9   139.4  Favored   5   5  0.59   7  0.89  molprobity  
27  27  t         -87.5   120.2  Favored   5   6  1.00   8  1.20  molprobity  
28  28  m        -126.4   157.3  Favored   4   6  0.61   8  0.93  molprobity  
29  29  p         -68.5   158.8  Favored   7   7  0.51  10  1.18  molprobity  
30  30  mt       -120.5    29.3  Favored  11   8  0.50  11  0.64  molprobity  
31  31  mtm       -68.3   144.9  Favored   9   8  0.64  10  0.92  molprobity  
32  32  ?         -73.1   149.5  Favored   5   5  0.70   7  0.93  molprobity  
33  33  m        -124.4    64.9  Favored   4   6  0.59   9  0.43  molprobity  
34  34  Cg_endo   -64.9   155.8  Favored   7   8  0.42  12  0.73  molprobity  
35  35  Cg_exo    -41.7   128.8  Favored   7   8  0.51  11  0.80  molprobity  
36  36  ?          92.2    -6.2  Favored   3   4  0.65   5  0.96  molprobity  
37  37  p         -74.4    -7.9  Favored   5   6  1.26   8  0.68  molprobity  
38  38  p90           ?       ?  ?         9  13  0.70  15  0.85  molprobity  
#
loop_
_pdbx_vrpt_instance_clashes.ordinal
_pdbx_vrpt_instance_clashes.instance_id
_pdbx_vrpt_instance_clashes.label_atom_id
_pdbx_vrpt_instance_clashes.cid
_pdbx_vrpt_instance_clashes.clashmag
_pdbx_vrpt_instance_clashes.dist
1  19  SG   1  0.57  2.45  
2  23  HA2  1  0.57  2.45  
#
loop_
_pdbx_vrpt_instance_symm_clashes.ordinal
_pdbx_vrpt_instance_symm_clashes.instance_id
_pdbx_vrpt_instance_symm_clashes.label_atom_id
_pdbx_vrpt_instance_symm_clashes.scid
_pdbx_vrpt_instance_symm_clashes.symop
_pdbx_vrpt_instance_symm_clashes.clashmag
_pdbx_vrpt_instance_symm_clashes.dist
1  44  O  0  1_555  0.76  1.44  
2  44  O  0  3_554  0.76  1.44  
#
loop_
_pdbx_vrpt_software.ordinal
_pdbx_vrpt_software.name
_pdbx_vrpt_software.version
_pdbx_vrpt_software.success_y_or_n
1  molprobity   4.02b-467                                                             Y  
2  eds          2.35.1                                                                Y  
3  dcc          '"2.27  (2023-04-10)"'                                                Y  
4  xtriage      1.13                                                                  Y  
5  percentiles  "20191225.v01 (using entries in the PDB archive December 25th 2019)"  Y  
##
