data_7ETP

_pdbx_vrpt_database.id    PDB
_pdbx_vrpt_database.code  7ETP
#
_pdbx_vrpt_exptl.ordinal  1
_pdbx_vrpt_exptl.method   x-ray
#
_pdbx_vrpt_summary.entry_id                    7ETP
_pdbx_vrpt_summary.PDB_deposition_date         2021-05-13
_pdbx_vrpt_summary.PDB_revision_number         1
_pdbx_vrpt_summary.PDB_revision_date           2022-05-18
_pdbx_vrpt_summary.report_creation_date        2022-05-09:15:03
_pdbx_vrpt_summary.attempted_validation_steps  molprobity,validation-pack,xtriage,eds,percentiles,writexml,writecif,writepdf
_pdbx_vrpt_summary.ligands_for_buster_report   N
#
loop_
_pdbx_vrpt_entity.id
_pdbx_vrpt_entity.type
_pdbx_vrpt_entity.description
1  polymer  Pro-Phe-Leu-Phe  
2  water    water            
#
loop_
_pdbx_vrpt_asym.label_asym_id
_pdbx_vrpt_asym.entity_id
A  1  
B  1  
C  1  
D  2  
E  2  
F  2  
#
loop_
_pdbx_vrpt_percentile_list.id
_pdbx_vrpt_percentile_list.range
_pdbx_vrpt_percentile_list.exp_method
1  all      x-ray  
2  1.09488  x-ray  
#
loop_
_pdbx_vrpt_percentile_type.id
_pdbx_vrpt_percentile_type.type
1  all_atom_clashscore           
2  Ramachandran_outlier_percent  
3  rotamer_outliers_percent      
4  RSRZ_outliers_percent         
5  R_value_R_free                
#
loop_
_pdbx_vrpt_percentile_conditions.id
_pdbx_vrpt_percentile_conditions.percentile_list_id
_pdbx_vrpt_percentile_conditions.type_id
_pdbx_vrpt_percentile_conditions.rank
_pdbx_vrpt_percentile_conditions.number_entries_total
_pdbx_vrpt_percentile_conditions.res_high
_pdbx_vrpt_percentile_conditions.res_low
 1  1  1   20.79  141614     ?     ?  
 2  2  1    8.02    1671  1.06  1.14  
 3  1  2  100.00  138981     ?     ?  
 4  2  2  100.00    1615  1.06  1.14  
 5  1  3  100.00  138945     ?     ?  
 6  2  3  100.00    1613  1.06  1.14  
 7  1  4  100.00  127900     ?     ?  
 8  2  4  100.00    1588  1.06  1.14  
 9  1  5   96.25  130704     ?     ?  
10  2  5   41.00    1619  1.06  1.14  
#
loop_
_pdbx_vrpt_percentile_entity_view.ordinal
_pdbx_vrpt_percentile_entity_view.conditions_id
_pdbx_vrpt_percentile_entity_view.type_id
_pdbx_vrpt_percentile_entity_view.label_asym_id
_pdbx_vrpt_percentile_entity_view.PDB_model_num
_pdbx_vrpt_percentile_entity_view.entity_id
_pdbx_vrpt_percentile_entity_view.auth_asym_id
_pdbx_vrpt_percentile_entity_view.rank
 1  3  2  A  1  1  A  100.00  
 2  4  2  A  1  1  A  100.00  
 3  5  3  A  1  1  A  100.00  
 4  6  3  A  1  1  A  100.00  
 5  7  4  A  1  1  A  100.00  
 6  8  4  A  1  1  A  100.00  
 7  3  2  B  1  1  B  100.00  
 8  4  2  B  1  1  B  100.00  
 9  5  3  B  1  1  B  100.00  
10  6  3  B  1  1  B  100.00  
11  7  4  B  1  1  B  100.00  
12  8  4  B  1  1  B  100.00  
13  3  2  C  1  1  C  100.00  
14  4  2  C  1  1  C  100.00  
15  5  3  C  1  1  C  100.00  
16  6  3  C  1  1  C  100.00  
17  7  4  C  1  1  C  100.00  
18  8  4  C  1  1  C  100.00  
#
loop_
_pdbx_vrpt_summary_entity_geometry.ordinal
_pdbx_vrpt_summary_entity_geometry.PDB_model_num
_pdbx_vrpt_summary_entity_geometry.entity_id
_pdbx_vrpt_summary_entity_geometry.label_asym_id
_pdbx_vrpt_summary_entity_geometry.auth_asym_id
_pdbx_vrpt_summary_entity_geometry.angles_RMSZ
_pdbx_vrpt_summary_entity_geometry.bonds_RMSZ
_pdbx_vrpt_summary_entity_geometry.num_bonds_RMSZ
_pdbx_vrpt_summary_entity_geometry.num_angles_RMSZ
1  1  1  A  A  0.69  0.49    60    75  
2  1  1  B  B  0.51  0.38    40    51  
3  1  1  C  C  0.50  0.52    40    51  
4  1  2  D  A     ?     ?     ?     ?  
5  1  2  E  B     ?     ?     ?     ?  
6  1  2  F  C     ?     ?     ?     ?  
#
_pdbx_vrpt_summary_geometry.ordinal                        1
_pdbx_vrpt_summary_geometry.percent_ramachandran_outliers  0.00
_pdbx_vrpt_summary_geometry.percent_rotamer_outliers       0.00
_pdbx_vrpt_summary_geometry.clashscore                     12.20
_pdbx_vrpt_summary_geometry.num_H_reduce                   122
_pdbx_vrpt_summary_geometry.num_bonds_RMSZ                 140
_pdbx_vrpt_summary_geometry.bonds_RMSZ                     0.47
_pdbx_vrpt_summary_geometry.num_angles_RMSZ                177
_pdbx_vrpt_summary_geometry.angles_RMSZ                    0.59
#
_pdbx_vrpt_summary_diffraction.exp_method                x-ray
_pdbx_vrpt_summary_diffraction.ordinal                   1
_pdbx_vrpt_summary_diffraction.Babinet_b                 23.030
_pdbx_vrpt_summary_diffraction.bulk_solvent_b            24.282
_pdbx_vrpt_summary_diffraction.Wilson_B_estimate         8.748
_pdbx_vrpt_summary_diffraction.I_over_sigma              0.98(1.09A)
_pdbx_vrpt_summary_diffraction.num_miller_indices        4366
_pdbx_vrpt_summary_diffraction.Babinet_k                 0.445
_pdbx_vrpt_summary_diffraction.bulk_solvent_k            0.321
_pdbx_vrpt_summary_diffraction.Padilla_Yeates_L_mean     0.504
_pdbx_vrpt_summary_diffraction.Padilla_Yeates_L2_mean    0.340
_pdbx_vrpt_summary_diffraction.Fo_Fc_correlation         0.982
_pdbx_vrpt_summary_diffraction.DCC_R                     0.16
_pdbx_vrpt_summary_diffraction.DCC_Rfree                 0.17
_pdbx_vrpt_summary_diffraction.EDS_R                     0.17
_pdbx_vrpt_summary_diffraction.EDS_res_high              1.09
_pdbx_vrpt_summary_diffraction.EDS_res_low               21.46
_pdbx_vrpt_summary_diffraction.Wilson_B_aniso            "[9.335,6.663,11.226,0.000,0.000,0.000]"
_pdbx_vrpt_summary_diffraction.data_anisotropy           0.503
_pdbx_vrpt_summary_diffraction.trans_NCS_details         "The analyses of the Patterson function reveals a significant off-origin peak that is 27.29 % of the origin peak, indicating pseudo-translational symmetry.  The chance of finding a peak of this or larger height by random in a structure without pseudo-translational symmetry is equal to 2.2564e-03. The detected translational NCS is most likely also responsible for the elevated intensity ratio.  See the relevant section of the logfile for more details."
_pdbx_vrpt_summary_diffraction.B_factor_type             FULL
_pdbx_vrpt_summary_diffraction.acentric_outliers         4
_pdbx_vrpt_summary_diffraction.centric_outliers          1
_pdbx_vrpt_summary_diffraction.data_completeness         99.05
_pdbx_vrpt_summary_diffraction.number_reflns_R_free      218
_pdbx_vrpt_summary_diffraction.percent_free_reflections  4.99
_pdbx_vrpt_summary_diffraction.percent_RSRZ_outliers     0.00
_pdbx_vrpt_summary_diffraction.PDB_resolution_high       1.09
_pdbx_vrpt_summary_diffraction.PDB_resolution_low        21.46
_pdbx_vrpt_summary_diffraction.PDB_R                     0.16
_pdbx_vrpt_summary_diffraction.PDB_Rfree                 0.17
#
loop_
_pdbx_vrpt_model_instance.id
_pdbx_vrpt_model_instance.PDB_model_num
_pdbx_vrpt_model_instance.entity_id
_pdbx_vrpt_model_instance.label_asym_id
_pdbx_vrpt_model_instance.label_seq_id
_pdbx_vrpt_model_instance.label_comp_id
_pdbx_vrpt_model_instance.auth_asym_id
_pdbx_vrpt_model_instance.auth_seq_id
_pdbx_vrpt_model_instance.label_alt_id
_pdbx_vrpt_model_instance.PDB_ins_code
_pdbx_vrpt_model_instance.count_clashes
 1  1  1  A  1  PRO  A    1  .  ?        ?  
 2  1  1  A  2  PHE  A    2  .  ?        ?  
 3  1  1  A  3  LEU  A    3  A  ?        ?  
 4  1  1  A  3  LEU  A    3  B  ?        5  
 5  1  1  A  4  PHE  A    4  A  ?        ?  
 6  1  1  A  4  PHE  A    4  B  ?        ?  
 7  1  1  B  1  PRO  B   54  .  ?        ?  
 8  1  1  B  2  PHE  B   55  .  ?        ?  
 9  1  1  B  3  LEU  B   56  .  ?        ?  
10  1  1  B  4  PHE  B   57  .  ?        ?  
11  1  1  C  1  PRO  C    1  .  ?        ?  
12  1  1  C  2  PHE  C    2  .  ?        ?  
13  1  1  C  3  LEU  C    3  .  ?        ?  
14  1  1  C  4  PHE  C    4  .  ?        ?  
15  1  2  D  .  HOH  A  101  .  ?        ?  
16  1  2  E  .  HOH  B  101  .  ?        ?  
17  1  2  E  .  HOH  B  102  .  ?        ?  
18  1  2  E  .  HOH  B  103  .  ?        ?  
19  1  2  F  .  HOH  C  101  .  ?        ?  
20  1  2  F  .  HOH  C  102  .  ?        ?  
21  1  2  F  .  HOH  C  103  .  ?        ?  
22  1  2  F  .  HOH  C  104  .  ?        ?  
23  1  2  F  .  HOH  C  105  .  ?        ?  
24  1  2  F  .  HOH  C  106  .  ?        ?  
#
loop_
_pdbx_vrpt_model_instance_geometry.ordinal
_pdbx_vrpt_model_instance_geometry.instance_id
_pdbx_vrpt_model_instance_geometry.rotamer_class
_pdbx_vrpt_model_instance_geometry.phi
_pdbx_vrpt_model_instance_geometry.psi
_pdbx_vrpt_model_instance_geometry.ramachandran_class
_pdbx_vrpt_model_instance_geometry.num_H_reduce
_pdbx_vrpt_model_instance_geometry.OWAB
_pdbx_vrpt_model_instance_geometry.num_bonds_RMSZ
_pdbx_vrpt_model_instance_geometry.bonds_RMSZ
_pdbx_vrpt_model_instance_geometry.num_angles_RMSZ
_pdbx_vrpt_model_instance_geometry.angles_RMSZ
_pdbx_vrpt_model_instance_geometry.program_for_bond_angle_geometry
_pdbx_vrpt_model_instance_geometry.average_occupancy
 1   1  Cg_exo       ?      ?  ?           9   9.660     8  0.30    11  0.55  molprobity  1.000  
 2   2  m-30    -119.1  124.1  Favored     9   9.780    12  0.51    16  0.79  molprobity  1.000  
 3   3  tp      -117.6  122.0  Favored    11  10.270     8  0.59    11  0.71  molprobity  1.000  
 4   4  tp      -117.6  122.0  Favored    11  10.270     8  0.59    11  0.71  molprobity  1.000  
 5   5  p90          ?      ?  ?           ?  10.500    12  0.47    13  0.66  molprobity  1.000  
 6   6  p90          ?      ?  ?           ?  10.500    12  0.47    13  0.66  molprobity  1.000  
 7   7  Cg_exo       ?      ?  ?           7   9.370     8  0.37    11  0.38  molprobity  1.000  
 8   8  t80     -129.1  113.6  Favored     9  10.150    12  0.34    16  0.60  molprobity  1.000  
 9   9  mt      -119.2  127.4  Favored    11   9.300     8  0.27    11  0.52  molprobity  1.000  
10  10  p90          ?      ?  ?           9  10.670    12  0.47    13  0.48  molprobity  1.000  
11  11  Cg_exo       ?      ?  ?           9  11.100     8  0.35    11  0.31  molprobity  1.000  
12  12  t80     -142.3  118.3  Favored     9   9.850    12  0.60    16  0.57  molprobity  1.000  
13  13  tp      -106.0  126.6  Favored    11  11.100     8  0.32    11  0.44  molprobity  1.000  
14  14  p90          ?      ?  ?           9  12.520    12  0.62    13  0.58  molprobity  1.000  
15  15  ?            ?      ?  ?           ?  20.680     ?     ?     ?     ?  ?           1.000  
16  16  ?            ?      ?  ?           ?  15.760     ?     ?     ?     ?  ?           1.000  
17  17  ?            ?      ?  ?           ?  31.250     ?     ?     ?     ?  ?           1.000  
18  18  ?            ?      ?  ?           ?  35.580     ?     ?     ?     ?  ?           1.000  
19  19  ?            ?      ?  ?           ?  32.190     ?     ?     ?     ?  ?           1.000  
20  20  ?            ?      ?  ?           ?  26.440     ?     ?     ?     ?  ?           1.000  
21  21  ?            ?      ?  ?           ?  19.170     ?     ?     ?     ?  ?           1.000  
22  22  ?            ?      ?  ?           ?  17.950     ?     ?     ?     ?  ?           1.000  
23  23  ?            ?      ?  ?           ?  25.370     ?     ?     ?     ?  ?           1.000  
24  24  ?            ?      ?  ?           ?  32.220     ?     ?     ?     ?  ?           1.000  
#
loop_
_pdbx_vrpt_instance_clashes.ordinal
_pdbx_vrpt_instance_clashes.instance_id
_pdbx_vrpt_instance_clashes.label_atom_id
_pdbx_vrpt_instance_clashes.cid
_pdbx_vrpt_instance_clashes.clashmag
_pdbx_vrpt_instance_clashes.dist
1  4  C     1  0.62  2.20  
2  4  C     2  0.42  2.86  
3  4  HD23  1  0.62  2.20  
4  4  HD23  3  0.44  2.33  
5  4  CD2   2  0.42  2.86  
#
loop_
_pdbx_vrpt_model_instance_density.ordinal
_pdbx_vrpt_model_instance_density.instance_id
_pdbx_vrpt_model_instance_density.natoms_eds
_pdbx_vrpt_model_instance_density.RSRCC
_pdbx_vrpt_model_instance_density.RSR
_pdbx_vrpt_model_instance_density.RSRZ
 1   1   7  0.968  0.081  0.233  
 2   2  11  0.963  0.086  0.612  
 3   3  16  0.963  0.100  0.928  
 4   4  16  0.963  0.100  0.928  
 5   5  12  0.966  0.082  0.478  
 6   6  12  0.966  0.082  0.478  
 7   7   7  0.968  0.083  0.284  
 8   8  11  0.969  0.080  0.411  
 9   9   8  0.971  0.083  0.348  
10  10  12  0.963  0.093  0.846  
11  11   7  0.975  0.077  0.132  
12  12  11  0.958  0.084  0.545  
13  13   8  0.957  0.095  0.758  
14  14  12  0.931  0.094  0.880  
15  15   1  0.950  0.123      ?  
16  16   1  0.950  0.094      ?  
17  17   1  0.788  0.212      ?  
18  18   1  0.805  0.271      ?  
19  19   1  0.803  0.152      ?  
20  20   1  0.935  0.117      ?  
21  21   1  0.949  0.084      ?  
22  22   1  0.951  0.120      ?  
23  23   1  0.951  0.083      ?  
24  24   1  0.781  0.205      ?  
#
loop_
_pdbx_vrpt_software.ordinal
_pdbx_vrpt_software.name
_pdbx_vrpt_software.version
_pdbx_vrpt_software.success_y_or_n
1  molprobity   4.02b-467                                                             Y  
2  eds          2.28.1                                                                Y  
3  dcc          "2.26  (2020-01-20)"                                                  Y  
4  xtriage      1.13                                                                  Y  
5  percentiles  "20191225.v01 (using entries in the PDB archive December 25th 2019)"  Y  
##
