data_6AXZ

_audit_conform.dict_name      mmcif_pdbx_vrpt.dic
_audit_conform.dict_version   0.068
_audit_conform.dict_location  https://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx_vrpt.dic
#
loop_
_pdbx_vrpt_database.id
_pdbx_vrpt_database.code
PDB   6AXZ      
EMDB  EMD-7017  
#
_pdbx_vrpt_exptl.ordinal  1
_pdbx_vrpt_exptl.method   "electron crystallography"
#
_pdbx_vrpt_summary.entry_id                    6AXZ
_pdbx_vrpt_summary.PDB_deposition_date         2017-09-07
_pdbx_vrpt_summary.PDB_revision_number         4
_pdbx_vrpt_summary.PDB_revision_date           2024-03-13
_pdbx_vrpt_summary.EMDB_deposition_date        2017-09-07
_pdbx_vrpt_summary.report_creation_date        2025-02-20:15:40
_pdbx_vrpt_summary.attempted_validation_steps  visualanalysis,molprobity,validation-pack,validation_schema,percentiles,writexml,writecif,writepdf
_pdbx_vrpt_summary.ligands_for_buster_report   N
#
loop_
_pdbx_vrpt_entity.id
_pdbx_vrpt_entity.type
_pdbx_vrpt_entity.description
1  polymer  "Major prion protein"  
2  water    water  
#
loop_
_pdbx_vrpt_asym.label_asym_id
_pdbx_vrpt_asym.entity_id
A  1  
B  2  
#
loop_
_pdbx_vrpt_percentile_list.id
_pdbx_vrpt_percentile_list.range
_pdbx_vrpt_percentile_list.exp_method
1  all  pdb  
2  all  "electron microscopy"  
#
loop_
_pdbx_vrpt_percentile_type.id
_pdbx_vrpt_percentile_type.type
1  all_atom_clashscore           
2  Ramachandran_outlier_percent  
3  rotamer_outliers_percent      
#
loop_
_pdbx_vrpt_percentile_conditions.id
_pdbx_vrpt_percentile_conditions.percentile_list_id
_pdbx_vrpt_percentile_conditions.type_id
_pdbx_vrpt_percentile_conditions.rank
_pdbx_vrpt_percentile_conditions.number_entries_total
_pdbx_vrpt_percentile_conditions.res_high
_pdbx_vrpt_percentile_conditions.res_low
1  1  1   99.96  210492  ?     ?     
2  2  1   99.83   15764  ?     ?     
3  1  2  100.00  207382  ?     ?     
4  2  2  100.00   16835  ?     ?     
5  1  3  100.00  206894  ?     ?     
6  2  3  100.00   16415  ?     ?     
#
loop_
_pdbx_vrpt_percentile_entity_view.ordinal
_pdbx_vrpt_percentile_entity_view.conditions_id
_pdbx_vrpt_percentile_entity_view.type_id
_pdbx_vrpt_percentile_entity_view.label_asym_id
_pdbx_vrpt_percentile_entity_view.PDB_model_num
_pdbx_vrpt_percentile_entity_view.entity_id
_pdbx_vrpt_percentile_entity_view.auth_asym_id
_pdbx_vrpt_percentile_entity_view.rank
1  3  2  A  1  1  A  100.00  
2  4  2  A  1  1  A  100.00  
3  5  3  A  1  1  A  100.00  
4  6  3  A  1  1  A  100.00  
#
_pdbx_vrpt_summary_entity_geometry.ordinal          1
_pdbx_vrpt_summary_entity_geometry.PDB_model_num    1
_pdbx_vrpt_summary_entity_geometry.entity_id        1
_pdbx_vrpt_summary_entity_geometry.label_asym_id    A
_pdbx_vrpt_summary_entity_geometry.auth_asym_id     A
_pdbx_vrpt_summary_entity_geometry.angles_RMSZ      0.57
_pdbx_vrpt_summary_entity_geometry.bonds_RMSZ       0.72
_pdbx_vrpt_summary_entity_geometry.num_bonds_RMSZ   82
_pdbx_vrpt_summary_entity_geometry.num_angles_RMSZ  109
#
_pdbx_vrpt_summary_entity_fit_to_map.ordinal        1
_pdbx_vrpt_summary_entity_fit_to_map.PDB_model_num  1
_pdbx_vrpt_summary_entity_fit_to_map.entity_id      1
_pdbx_vrpt_summary_entity_fit_to_map.label_asym_id  A
_pdbx_vrpt_summary_entity_fit_to_map.auth_asym_id   A
_pdbx_vrpt_summary_entity_fit_to_map.Q_score        0.184
#
_pdbx_vrpt_summary_geometry.ordinal                        1
_pdbx_vrpt_summary_geometry.percent_ramachandran_outliers  0.00
_pdbx_vrpt_summary_geometry.percent_rotamer_outliers       0.00
_pdbx_vrpt_summary_geometry.clashscore                     0.00
_pdbx_vrpt_summary_geometry.num_H_reduce                   66
_pdbx_vrpt_summary_geometry.num_bonds_RMSZ                 82
_pdbx_vrpt_summary_geometry.bonds_RMSZ                     0.72
_pdbx_vrpt_summary_geometry.num_angles_RMSZ                109
_pdbx_vrpt_summary_geometry.angles_RMSZ                    0.57
#
_pdbx_vrpt_summary_em.exp_method  "electron crystallography"
_pdbx_vrpt_summary_em.ordinal     1
_pdbx_vrpt_summary_em.Q_score     0.184
#
loop_
_pdbx_vrpt_model_instance.id
_pdbx_vrpt_model_instance.PDB_model_num
_pdbx_vrpt_model_instance.entity_id
_pdbx_vrpt_model_instance.label_asym_id
_pdbx_vrpt_model_instance.label_seq_id
_pdbx_vrpt_model_instance.label_comp_id
_pdbx_vrpt_model_instance.auth_asym_id
_pdbx_vrpt_model_instance.auth_seq_id
_pdbx_vrpt_model_instance.label_alt_id
_pdbx_vrpt_model_instance.PDB_ins_code
 1  1  1  A  1  GLN  A  168  .  ?     
 2  1  1  A  2  TYR  A  169  .  ?     
 3  1  1  A  3  ASN  A  170  .  ?     
 4  1  1  A  4  ASN  A  171  .  ?     
 5  1  1  A  5  GLN  A  172  .  ?     
 6  1  1  A  6  ASN  A  173  .  ?     
 7  1  1  A  7  ASN  A  174  .  ?     
 8  1  1  A  8  PHE  A  175  .  ?     
 9  1  1  A  9  VAL  A  176  .  ?     
10  1  2  B  .  HOH  A  201  .  ?     
11  1  2  B  .  HOH  A  202  .  ?     
#
loop_
_pdbx_vrpt_model_instance_geometry.ordinal
_pdbx_vrpt_model_instance_geometry.instance_id
_pdbx_vrpt_model_instance_geometry.rotamer_class
_pdbx_vrpt_model_instance_geometry.phi
_pdbx_vrpt_model_instance_geometry.psi
_pdbx_vrpt_model_instance_geometry.ramachandran_class
_pdbx_vrpt_model_instance_geometry.num_H_reduce
_pdbx_vrpt_model_instance_geometry.num_bonds_RMSZ
_pdbx_vrpt_model_instance_geometry.bonds_RMSZ
_pdbx_vrpt_model_instance_geometry.num_angles_RMSZ
_pdbx_vrpt_model_instance_geometry.angles_RMSZ
_pdbx_vrpt_model_instance_geometry.program_for_bond_angle_geometry
1  1  tt0        ?      ?  ?        7   9  0.34  12  0.52  molprobity  
2  2  t80   -112.7  117.8  Favored  9  13  0.95  18  0.97  molprobity  
3  3  m-20  -123.0  119.7  Favored  6   8  0.72  11  0.35  molprobity  
4  4  t30   -139.2  135.2  Favored  6   8  1.00  11  0.37  molprobity  
5  5  tm0?  -152.0  134.2  Favored  8   9  0.48  12  0.59  molprobity  
6  6  m-80  -142.2  142.9  Favored  6   8  0.74  11  0.56  molprobity  
7  7  m-20  -120.4  128.6  Favored  6   8  0.99  11  0.49  molprobity  
8  8  m-85  -122.9  109.8  Favored  9  12  0.49  16  0.29  molprobity  
9  9  t          ?      ?  ?        9   7  0.25   7  0.35  molprobity  
#
loop_
_pdbx_vrpt_model_instance_map_fitting.ordinal
_pdbx_vrpt_model_instance_map_fitting.instance_id
_pdbx_vrpt_model_instance_map_fitting.Q_score
1  1  0.000  
2  2  0.000  
3  3  0.007  
4  4  0.049  
5  5  0.374  
6  6  0.197  
7  7  0.294  
8  8  0.350  
9  9  0.420  
#
loop_
_pdbx_vrpt_software.ordinal
_pdbx_vrpt_software.name
_pdbx_vrpt_software.version
_pdbx_vrpt_software.success_y_or_n
1  molprobity   4.02b-467                                                             Y  
2  percentiles  "20231227.v01 (using entries in the PDB archive December 27th 2023)"  Y  
3  chimera      1.16                                                                  Y  
4  mapq         1.8.1                                                                 Y  
##
