data_5XSG

_audit_conform.dict_name      mmcif_pdbx_vrpt.dic
_audit_conform.dict_version   0.068
_audit_conform.dict_location  https://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx_vrpt.dic
#
_pdbx_vrpt_database.id    PDB
_pdbx_vrpt_database.code  5XSG
#
_pdbx_vrpt_exptl.ordinal  1
_pdbx_vrpt_exptl.method   "electron crystallography"
#
_pdbx_vrpt_summary.entry_id                    5XSG
_pdbx_vrpt_summary.PDB_deposition_date         2017-06-14
_pdbx_vrpt_summary.PDB_revision_number         3
_pdbx_vrpt_summary.PDB_revision_date           2024-03-27
_pdbx_vrpt_summary.report_creation_date        2025-02-20:12:54
_pdbx_vrpt_summary.attempted_validation_steps  molprobity,validation-pack,xtriage,eds_mogul,validation_schema,percentiles,writexml,writecif,writepdf
_pdbx_vrpt_summary.ligands_for_buster_report   N
#
loop_
_pdbx_vrpt_entity.id
_pdbx_vrpt_entity.type
_pdbx_vrpt_entity.description
1  polymer  "RNA-binding protein FUS"  
2  water    water  
#
loop_
_pdbx_vrpt_asym.label_asym_id
_pdbx_vrpt_asym.entity_id
A  1  
B  2  
#
loop_
_pdbx_vrpt_percentile_list.id
_pdbx_vrpt_percentile_list.range
_pdbx_vrpt_percentile_list.exp_method
1  all  pdb  
2  all  "electron microscopy"  
#
loop_
_pdbx_vrpt_percentile_type.id
_pdbx_vrpt_percentile_type.type
1  all_atom_clashscore           
2  Ramachandran_outlier_percent  
3  rotamer_outliers_percent      
4  RSRZ_outliers_percent         
5  R_value_R_free                
#
loop_
_pdbx_vrpt_percentile_conditions.id
_pdbx_vrpt_percentile_conditions.percentile_list_id
_pdbx_vrpt_percentile_conditions.type_id
_pdbx_vrpt_percentile_conditions.rank
_pdbx_vrpt_percentile_conditions.number_entries_total
_pdbx_vrpt_percentile_conditions.res_high
_pdbx_vrpt_percentile_conditions.res_low
 1  1  1   99.96  210492  ?     ?     
 2  2  1   99.83   15764  ?     ?     
 3  1  2  100.00  207382  ?     ?     
 4  2  2  100.00   16835  ?     ?     
 5  1  3  100.00  206894  ?     ?     
 6  2  3  100.00   16415  ?     ?     
 7  1  4  100.00  164674  ?     ?     
 8  2  4  100.00      54  ?     ?     
 9  1  5   36.32  164678  ?     ?     
10  2  5   91.49      53  ?     ?     
#
loop_
_pdbx_vrpt_percentile_entity_view.ordinal
_pdbx_vrpt_percentile_entity_view.conditions_id
_pdbx_vrpt_percentile_entity_view.type_id
_pdbx_vrpt_percentile_entity_view.label_asym_id
_pdbx_vrpt_percentile_entity_view.PDB_model_num
_pdbx_vrpt_percentile_entity_view.entity_id
_pdbx_vrpt_percentile_entity_view.auth_asym_id
_pdbx_vrpt_percentile_entity_view.rank
1  3  2  A  1  1  A  100.00  
2  4  2  A  1  1  A  100.00  
3  5  3  A  1  1  A  100.00  
4  6  3  A  1  1  A  100.00  
5  7  4  A  1  1  A  100.00  
6  8  4  A  1  1  A  100.00  
#
_pdbx_vrpt_summary_entity_geometry.ordinal          1
_pdbx_vrpt_summary_entity_geometry.PDB_model_num    1
_pdbx_vrpt_summary_entity_geometry.entity_id        1
_pdbx_vrpt_summary_entity_geometry.label_asym_id    A
_pdbx_vrpt_summary_entity_geometry.auth_asym_id     A
_pdbx_vrpt_summary_entity_geometry.angles_RMSZ      0.72
_pdbx_vrpt_summary_entity_geometry.bonds_RMSZ       0.83
_pdbx_vrpt_summary_entity_geometry.num_bonds_RMSZ   48
_pdbx_vrpt_summary_entity_geometry.num_angles_RMSZ  62
#
_pdbx_vrpt_summary_geometry.ordinal                        1
_pdbx_vrpt_summary_geometry.percent_ramachandran_outliers  0.00
_pdbx_vrpt_summary_geometry.percent_rotamer_outliers       0.00
_pdbx_vrpt_summary_geometry.clashscore                     0.00
_pdbx_vrpt_summary_geometry.num_H_reduce                   35
_pdbx_vrpt_summary_geometry.num_bonds_RMSZ                 48
_pdbx_vrpt_summary_geometry.bonds_RMSZ                     0.83
_pdbx_vrpt_summary_geometry.num_angles_RMSZ                62
_pdbx_vrpt_summary_geometry.angles_RMSZ                    0.72
#
_pdbx_vrpt_summary_diffraction.exp_method                "electron crystallography"
_pdbx_vrpt_summary_diffraction.ordinal                   1
_pdbx_vrpt_summary_diffraction.bulk_solvent_b            115.749
_pdbx_vrpt_summary_diffraction.bulk_solvent_k            35.516
_pdbx_vrpt_summary_diffraction.Fo_Fc_correlation         0.910
_pdbx_vrpt_summary_diffraction.DCC_R                     0.2668
_pdbx_vrpt_summary_diffraction.DCC_Rfree                 0.2541
_pdbx_vrpt_summary_diffraction.EDS_R                     0.2529
_pdbx_vrpt_summary_diffraction.EDS_res_high              0.73
_pdbx_vrpt_summary_diffraction.EDS_res_low               2.00
_pdbx_vrpt_summary_diffraction.B_factor_type             FULL
_pdbx_vrpt_summary_diffraction.data_completeness         80.65
_pdbx_vrpt_summary_diffraction.number_reflns_R_free      3600
_pdbx_vrpt_summary_diffraction.percent_free_reflections  10.15
_pdbx_vrpt_summary_diffraction.percent_RSRZ_outliers     0.00
_pdbx_vrpt_summary_diffraction.density_fitness_version   1.0.11
_pdbx_vrpt_summary_diffraction.CCP4_version              "9.0.004 (Gargrove)"
#
loop_
_pdbx_vrpt_model_instance.id
_pdbx_vrpt_model_instance.PDB_model_num
_pdbx_vrpt_model_instance.entity_id
_pdbx_vrpt_model_instance.label_asym_id
_pdbx_vrpt_model_instance.label_seq_id
_pdbx_vrpt_model_instance.label_comp_id
_pdbx_vrpt_model_instance.auth_asym_id
_pdbx_vrpt_model_instance.auth_seq_id
_pdbx_vrpt_model_instance.label_alt_id
_pdbx_vrpt_model_instance.PDB_ins_code
1  1  1  A  1  SER  A   73  .  ?     
2  1  1  A  2  TYR  A   74  .  ?     
3  1  1  A  3  SER  A   75  .  ?     
4  1  1  A  4  GLY  A   76  .  ?     
5  1  1  A  5  TYR  A   77  .  ?     
6  1  1  A  6  SER  A   78  .  ?     
7  1  2  B  .  HOH  A  101  .  ?     
#
loop_
_pdbx_vrpt_model_instance_geometry.ordinal
_pdbx_vrpt_model_instance_geometry.instance_id
_pdbx_vrpt_model_instance_geometry.rotamer_class
_pdbx_vrpt_model_instance_geometry.phi
_pdbx_vrpt_model_instance_geometry.psi
_pdbx_vrpt_model_instance_geometry.ramachandran_class
_pdbx_vrpt_model_instance_geometry.num_H_reduce
_pdbx_vrpt_model_instance_geometry.OWAB
_pdbx_vrpt_model_instance_geometry.num_bonds_RMSZ
_pdbx_vrpt_model_instance_geometry.bonds_RMSZ
_pdbx_vrpt_model_instance_geometry.num_angles_RMSZ
_pdbx_vrpt_model_instance_geometry.angles_RMSZ
_pdbx_vrpt_model_instance_geometry.program_for_bond_angle_geometry
_pdbx_vrpt_model_instance_geometry.average_occupancy
1  1  m          ?       ?  ?           4   8.670     6  0.79     8  0.59  molprobity  1.000  
2  2  t80   -124.4   134.3  Favored     9  14.930    13  0.90    18  0.66  molprobity  1.000  
3  3  p     -129.6   128.0  Favored     5   6.800     6  0.69     8  0.45  molprobity  1.000  
4  4  ?      133.3  -137.7  Favored     3   5.170     4  0.40     5  1.04  molprobity  1.000  
5  5  t80   -124.0   128.2  Favored     9   8.460    13  1.02    18  0.88  molprobity  1.000  
6  6  p          ?       ?  ?           5   8.630     6  0.59     5  0.33  molprobity  1.000  
7  7  ?          ?       ?  ?           ?   3.870     ?     ?     ?     ?  ?           1.000  
#
loop_
_pdbx_vrpt_model_instance_density.ordinal
_pdbx_vrpt_model_instance_density.instance_id
_pdbx_vrpt_model_instance_density.natoms_eds
_pdbx_vrpt_model_instance_density.RSRCC
_pdbx_vrpt_model_instance_density.RSR
_pdbx_vrpt_model_instance_density.RSRZ
_pdbx_vrpt_model_instance_density.EDIAm
_pdbx_vrpt_model_instance_density.OPIA
1  1  13  0.988  0.034  -0.645  0.812  83.330  
2  2  21  0.980  0.031  -0.790  0.816  58.330  
3  3  11  0.995  0.015  -1.226  0.591  50.000  
4  4   7  0.986  0.027  -0.721  0.874  75.000  
5  5  21  0.990  0.028  -0.921  0.811  63.640  
6  6  12  0.978  0.036  -0.584  0.847  50.000  
7  7   1  0.996  0.030       ?  0.590   0.000  
#
loop_
_pdbx_vrpt_software.ordinal
_pdbx_vrpt_software.name
_pdbx_vrpt_software.version
_pdbx_vrpt_software.success_y_or_n
1  molprobity   4.02b-467                                                             Y  
2  eds          3.0                                                                   Y  
3  dcc          '"2.29  (2024-07-11))"'                                               Y  
4  xtriage      1.21                                                                  N  
5  percentiles  "20231227.v01 (using entries in the PDB archive December 27th 2023)"  Y  
##
