data_4B5R

loop_
_pdbx_vrpt_database.id
_pdbx_vrpt_database.code
PDB   4B5R       
PDBE  EBI-53649  
#
_pdbx_vrpt_exptl.ordinal  1
_pdbx_vrpt_exptl.method   x-ray
#
_pdbx_vrpt_summary.entry_id                    4B5R
_pdbx_vrpt_summary.PDB_deposition_date         2012-08-07
_pdbx_vrpt_summary.PDB_revision_number         3
_pdbx_vrpt_summary.PDB_revision_date           2023-12-20
_pdbx_vrpt_summary.RNA_suiteness               0.45
_pdbx_vrpt_summary.report_creation_date        2023-12-13:06:02
_pdbx_vrpt_summary.attempted_validation_steps  molprobity,validation-pack,xtriage,eds,mogul,buster-report,percentiles,writexml,writecif,writepdf
_pdbx_vrpt_summary.ligands_for_buster_report   Y
#
loop_
_pdbx_vrpt_entity.id
_pdbx_vrpt_entity.type
_pdbx_vrpt_entity.description
1  polymer      "SAM-I RIBOSWITCH"  
2  non-polymer  S-ADENOSYLMETHIONINE  
3  non-polymer  "BARIUM ION"  
4  non-polymer  "POTASSIUM ION"  
#
loop_
_pdbx_vrpt_asym.label_asym_id
_pdbx_vrpt_asym.entity_id
A  1  
B  2  
C  3  
D  4  
E  4  
F  3  
G  4  
H  3  
I  4  
J  4  
K  3  
L  3  
M  3  
N  3  
O  3  
P  3  
Q  3  
R  3  
S  3  
T  4  
U  4  
#
loop_
_pdbx_vrpt_percentile_list.id
_pdbx_vrpt_percentile_list.range
_pdbx_vrpt_percentile_list.exp_method
1  all   x-ray  
2  2.95  x-ray  
#
loop_
_pdbx_vrpt_percentile_type.id
_pdbx_vrpt_percentile_type.type
1  all_atom_clashscore    
2  RSRZ_outliers_percent  
3  R_value_R_free         
4  RNAsuiteness_percent   
#
loop_
_pdbx_vrpt_percentile_conditions.id
_pdbx_vrpt_percentile_conditions.percentile_list_id
_pdbx_vrpt_percentile_conditions.type_id
_pdbx_vrpt_percentile_conditions.rank
_pdbx_vrpt_percentile_conditions.number_entries_total
_pdbx_vrpt_percentile_conditions.res_high
_pdbx_vrpt_percentile_conditions.res_low
1  1  1  20.06  141614     ?     ?  
2  2  1  50.75    3462  2.92  3.00  
3  1  2  80.23  127900     ?     ?  
4  2  2  65.41    2986  2.92  3.00  
5  1  3  68.17  130704     ?     ?  
6  2  3  95.12    3104  2.92  3.00  
7  1  4  31.14    3102     ?     ?  
8  2  4  33.24    1065  2.70  3.22  
#
loop_
_pdbx_vrpt_percentile_entity_view.ordinal
_pdbx_vrpt_percentile_entity_view.conditions_id
_pdbx_vrpt_percentile_entity_view.type_id
_pdbx_vrpt_percentile_entity_view.label_asym_id
_pdbx_vrpt_percentile_entity_view.PDB_model_num
_pdbx_vrpt_percentile_entity_view.entity_id
_pdbx_vrpt_percentile_entity_view.auth_asym_id
_pdbx_vrpt_percentile_entity_view.rank
1  3  2  A  1  1  A  80.23  
2  4  2  A  1  1  A  65.41  
#
_pdbx_vrpt_summary_entity_geometry.ordinal          1
_pdbx_vrpt_summary_entity_geometry.PDB_model_num    1
_pdbx_vrpt_summary_entity_geometry.entity_id        1
_pdbx_vrpt_summary_entity_geometry.label_asym_id    A
_pdbx_vrpt_summary_entity_geometry.auth_asym_id     A
_pdbx_vrpt_summary_entity_geometry.angles_RMSZ      0.92
_pdbx_vrpt_summary_entity_geometry.bonds_RMSZ       0.42
_pdbx_vrpt_summary_entity_geometry.num_bonds_RMSZ   2280
_pdbx_vrpt_summary_entity_geometry.num_angles_RMSZ  3556
#
_pdbx_vrpt_summary_geometry.ordinal          1
_pdbx_vrpt_summary_geometry.clashscore       12.48
_pdbx_vrpt_summary_geometry.num_H_reduce     1045
_pdbx_vrpt_summary_geometry.num_bonds_RMSZ   2280
_pdbx_vrpt_summary_geometry.bonds_RMSZ       0.42
_pdbx_vrpt_summary_geometry.num_angles_RMSZ  3556
_pdbx_vrpt_summary_geometry.angles_RMSZ      0.92
#
_pdbx_vrpt_summary_diffraction.exp_method                x-ray
_pdbx_vrpt_summary_diffraction.ordinal                   1
_pdbx_vrpt_summary_diffraction.Babinet_b                 10.000
_pdbx_vrpt_summary_diffraction.bulk_solvent_b            31.283
_pdbx_vrpt_summary_diffraction.Wilson_B_estimate         41.226
_pdbx_vrpt_summary_diffraction.I_over_sigma              5.03(2.95A)
_pdbx_vrpt_summary_diffraction.num_miller_indices        6185
_pdbx_vrpt_summary_diffraction.Babinet_k                 0.035
_pdbx_vrpt_summary_diffraction.bulk_solvent_k            0.317
_pdbx_vrpt_summary_diffraction.Padilla_Yeates_L_mean     0.456
_pdbx_vrpt_summary_diffraction.Padilla_Yeates_L2_mean    0.290
_pdbx_vrpt_summary_diffraction.Fo_Fc_correlation         0.921
_pdbx_vrpt_summary_diffraction.DCC_R                     0.19
_pdbx_vrpt_summary_diffraction.DCC_Rfree                 0.22
_pdbx_vrpt_summary_diffraction.EDS_R                     0.19
_pdbx_vrpt_summary_diffraction.EDS_res_high              2.95
_pdbx_vrpt_summary_diffraction.EDS_res_low               32.34
_pdbx_vrpt_summary_diffraction.Wilson_B_aniso            "[43.864,43.864,35.754,0.000,0.000,0.000]"
_pdbx_vrpt_summary_diffraction.data_anisotropy           0.197
_pdbx_vrpt_summary_diffraction.trans_NCS_details         "The largest off-origin peak in the Patterson function is 7.37% of the height of the origin peak. No significant pseudotranslation is detected."
_pdbx_vrpt_summary_diffraction.B_factor_type             FULL
_pdbx_vrpt_summary_diffraction.acentric_outliers         0
_pdbx_vrpt_summary_diffraction.centric_outliers          1
_pdbx_vrpt_summary_diffraction.data_completeness         99.71
_pdbx_vrpt_summary_diffraction.number_reflns_R_free      287
_pdbx_vrpt_summary_diffraction.percent_free_reflections  4.64
_pdbx_vrpt_summary_diffraction.percent_RSRZ_outliers     1.06
_pdbx_vrpt_summary_diffraction.PDB_resolution_high       2.95
_pdbx_vrpt_summary_diffraction.PDB_resolution_low        54.90
_pdbx_vrpt_summary_diffraction.PDB_R                     0.22
_pdbx_vrpt_summary_diffraction.PDB_Rfree                 0.25
#
loop_
_pdbx_vrpt_model_instance.id
_pdbx_vrpt_model_instance.PDB_model_num
_pdbx_vrpt_model_instance.entity_id
_pdbx_vrpt_model_instance.label_asym_id
_pdbx_vrpt_model_instance.label_seq_id
_pdbx_vrpt_model_instance.label_comp_id
_pdbx_vrpt_model_instance.auth_asym_id
_pdbx_vrpt_model_instance.auth_seq_id
_pdbx_vrpt_model_instance.label_alt_id
_pdbx_vrpt_model_instance.PDB_ins_code
_pdbx_vrpt_model_instance.count_bond_outliers
_pdbx_vrpt_model_instance.count_angle_outliers
_pdbx_vrpt_model_instance.count_clashes
_pdbx_vrpt_model_instance.count_mogul_bond_outliers
_pdbx_vrpt_model_instance.count_mogul_angle_outliers
_pdbx_vrpt_model_instance.count_mogul_torsion_outliers
  1  1  1  A   1  G    A     1  .  ?        1     1     1     ?     ?     ?  
  2  1  1  A   2  G    A     2  .  ?        ?     ?     1     ?     ?     ?  
  3  1  1  A   3  C    A     3  .  ?        ?     ?     2     ?     ?     ?  
  4  1  1  A   4  U    A     4  .  ?        ?     ?     2     ?     ?     ?  
  5  1  1  A   5  U    A     5  .  ?        ?     ?     1     ?     ?     ?  
  6  1  1  A   6  A    A     6  .  ?        ?     ?     1     ?     ?     ?  
  7  1  1  A   7  U    A     7  .  ?        ?     ?     ?     ?     ?     ?  
  8  1  1  A   8  C    A     8  .  ?        ?     ?     ?     ?     ?     ?  
  9  1  1  A   9  A    A     9  .  ?        ?     1     ?     ?     ?     ?  
 10  1  1  A  10  A    A    10  .  ?        ?     ?     ?     ?     ?     ?  
 11  1  1  A  11  G    A    11  .  ?        ?     ?     ?     ?     ?     ?  
 12  1  1  A  12  A    A    12  .  ?        ?     ?     ?     ?     ?     ?  
 13  1  1  A  13  G    A    13  .  ?        ?     ?     ?     ?     ?     ?  
 14  1  1  A  14  A    A    14  .  ?        ?     ?     ?     ?     ?     ?  
 15  1  1  A  15  G    A    15  .  ?        ?     ?     4     ?     ?     ?  
 16  1  1  A  16  G    A    16  .  ?        ?     1     ?     ?     ?     ?  
 17  1  1  A  17  G    A    17  .  ?        ?     ?     2     ?     ?     ?  
 18  1  1  A  18  G    A    18  .  ?        ?     2     3     ?     ?     ?  
 19  1  1  A  19  G    A    19  .  ?        ?     ?     7     ?     ?     ?  
 20  1  1  A  20  A    A    20  .  ?        ?     ?     2     ?     ?     ?  
 21  1  1  A  21  G    A    21  .  ?        ?     ?     ?     ?     ?     ?  
 22  1  1  A  22  C    A    22  .  ?        ?     ?     ?     ?     ?     ?  
 23  1  1  A  23  G    A    23  .  ?        ?     ?     ?     ?     ?     ?  
 24  1  1  A  24  A    A    24  .  ?        ?     ?     ?     ?     ?     ?  
 25  1  1  A  25  C    A    25  .  ?        ?     ?     ?     ?     ?     ?  
 26  1  1  A  26  U    A    26  .  ?        ?     ?     ?     ?     ?     ?  
 27  1  1  A  27  G    A    27  .  ?        ?     ?     ?     ?     ?     ?  
 28  1  1  A  28  G    A    28  .  ?        ?     ?     1     ?     ?     ?  
 29  1  1  A  29  C    A    29  .  ?        ?     ?     1     ?     ?     ?  
 30  1  1  A  30  G    A    30  .  ?        ?     ?     1     ?     ?     ?  
 31  1  1  A  31  C    A    31  .  ?        ?     ?     1     ?     ?     ?  
 32  1  1  A  32  G    A    32  .  ?        ?     ?     ?     ?     ?     ?  
 33  1  1  A  33  A    A    33  .  ?        ?     1     ?     ?     ?     ?  
 34  1  1  A  34  A    A    34  .  ?        ?     ?     ?     ?     ?     ?  
 35  1  1  A  35  G    A    35  .  ?        ?     ?    14     ?     ?     ?  
 36  1  1  A  36  A    A    36  .  ?        ?     1     ?     ?     ?     ?  
 37  1  1  A  37  A    A    37  .  ?        ?     ?     ?     ?     ?     ?  
 38  1  1  A  38  C    A    38  .  ?        ?     1     2     ?     ?     ?  
 39  1  1  A  39  C    A    39  .  ?        ?     ?     2     ?     ?     ?  
 40  1  1  A  40  C    A    40  .  ?        ?     ?     ?     ?     ?     ?  
 41  1  1  A  41  C    A    41  .  ?        ?     ?     ?     ?     ?     ?  
 42  1  1  A  42  G    A    42  .  ?        ?     ?     ?     ?     ?     ?  
 43  1  1  A  43  G    A    43  .  ?        ?     ?     1     ?     ?     ?  
 44  1  1  A  44  C    A    44  .  ?        ?     ?     1     ?     ?     ?  
 45  1  1  A  45  A    A    45  .  ?        ?     ?     1     ?     ?     ?  
 46  1  1  A  46  A    A    46  .  ?        ?     ?     2     ?     ?     ?  
 47  1  1  A  47  C    A    47  .  ?        ?     ?     1     ?     ?     ?  
 48  1  1  A  48  C    A    48  .  ?        ?     ?     2     ?     ?     ?  
 49  1  1  A  49  A    A    49  .  ?        ?     ?     3     ?     ?     ?  
 50  1  1  A  50  G    A    50  .  ?        ?     ?     3     ?     ?     ?  
 51  1  1  A  51  A    A    51  .  ?        ?     ?     ?     ?     ?     ?  
 52  1  1  A  52  A    A    52  .  ?        ?     ?     ?     ?     ?     ?  
 53  1  1  A  53  A    A    53  .  ?        ?     ?     1     ?     ?     ?  
 54  1  1  A  54  U    A    54  .  ?        ?     ?     ?     ?     ?     ?  
 55  1  1  A  55  G    A    55  .  ?        ?     ?     ?     ?     ?     ?  
 56  1  1  A  56  G    A    56  .  ?        ?     ?     3     ?     ?     ?  
 57  1  1  A  57  U    A    57  .  ?        ?     ?     ?     ?     ?     ?  
 58  1  1  A  58  G    A    58  .  ?        ?     ?     ?     ?     ?     ?  
 59  1  1  A  59  C    A    59  .  ?        ?     ?     ?     ?     ?     ?  
 60  1  1  A  60  C    A    60  .  ?        ?     ?     ?     ?     ?     ?  
 61  1  1  A  61  A    A    61  .  ?        ?     ?     ?     ?     ?     ?  
 62  1  1  A  62  A    A    62  .  ?        ?     ?     1     ?     ?     ?  
 63  1  1  A  63  U    A    63  .  ?        ?     ?     1     ?     ?     ?  
 64  1  1  A  64  U    A    64  .  ?        ?     ?     ?     ?     ?     ?  
 65  1  1  A  65  C    A    65  .  ?        ?     ?     ?     ?     ?     ?  
 66  1  1  A  66  C    A    66  .  ?        ?     ?     ?     ?     ?     ?  
 67  1  1  A  67  U    A    67  .  ?        ?     ?     ?     ?     ?     ?  
 68  1  1  A  68  G    A    68  .  ?        ?     ?     ?     ?     ?     ?  
 69  1  1  A  69  C    A    69  .  ?        ?     ?     ?     ?     ?     ?  
 70  1  1  A  70  A    A    70  .  ?        ?     ?     ?     ?     ?     ?  
 71  1  1  A  71  G    A    71  .  ?        ?     ?     ?     ?     ?     ?  
 72  1  1  A  72  C    A    72  .  ?        ?     ?     ?     ?     ?     ?  
 73  1  1  A  73  G    A    73  .  ?        ?     ?     ?     ?     ?     ?  
 74  1  1  A  74  G    A    74  .  ?        ?     ?     ?     ?     ?     ?  
 75  1  1  A  75  A    A    75  .  ?        ?     ?     ?     ?     ?     ?  
 76  1  1  A  76  A    A    76  .  ?        ?     ?     ?     ?     ?     ?  
 77  1  1  A  77  A    A    77  .  ?        ?     ?     1     ?     ?     ?  
 78  1  1  A  78  C    A    78  .  ?        ?     ?     1     ?     ?     ?  
 79  1  1  A  79  G    A    79  .  ?        ?     ?     ?     ?     ?     ?  
 80  1  1  A  80  U    A    80  .  ?        ?     ?     1     ?     ?     ?  
 81  1  1  A  81  U    A    81  .  ?        ?     ?     1     ?     ?     ?  
 82  1  1  A  82  G    A    82  .  ?        ?     ?     ?     ?     ?     ?  
 83  1  1  A  83  A    A    83  .  ?        ?     ?     ?     ?     ?     ?  
 84  1  1  A  84  A    A    84  .  ?        ?     ?     ?     ?     ?     ?  
 85  1  1  A  85  A    A    85  .  ?        ?     ?     ?     ?     ?     ?  
 86  1  1  A  86  G    A    86  .  ?        ?     ?     1     ?     ?     ?  
 87  1  1  A  87  A    A    87  .  ?        ?     ?     1     ?     ?     ?  
 88  1  1  A  88  U    A    88  .  ?        ?     ?     ?     ?     ?     ?  
 89  1  1  A  89  G    A    89  .  ?        ?     ?     ?     ?     ?     ?  
 90  1  1  A  90  A    A    90  .  ?        ?     ?     ?     ?     ?     ?  
 91  1  1  A  91  G    A    91  .  ?        ?     ?     ?     ?     ?     ?  
 92  1  1  A  92  C    A    92  .  ?        ?     ?     ?     ?     ?     ?  
 93  1  1  A  93  C    A    93  .  ?        ?     1     ?     ?     ?     ?  
 94  1  1  A  94  G    A    94  .  ?        ?     ?     ?     ?     ?     ?  
 95  1  2  B   .  SAM  A  1095  .  ?        ?     ?     ?     2     4     4  
 96  1  3  C   .  BA   A  1096  .  ?        ?     ?     ?     ?     ?     ?  
 97  1  4  D   .  K    A  1097  .  ?        ?     ?     ?     ?     ?     ?  
 98  1  4  E   .  K    A  1098  .  ?        ?     ?     ?     ?     ?     ?  
 99  1  3  F   .  BA   A  1099  .  ?        ?     ?     ?     ?     ?     ?  
100  1  4  G   .  K    A  1100  .  ?        ?     ?     ?     ?     ?     ?  
101  1  3  H   .  BA   A  1101  .  ?        ?     ?     ?     ?     ?     ?  
102  1  4  I   .  K    A  1102  .  ?        ?     ?     ?     ?     ?     ?  
103  1  4  J   .  K    A  1103  .  ?        ?     ?     ?     ?     ?     ?  
104  1  3  K   .  BA   A  1104  .  ?        ?     ?     ?     ?     ?     ?  
105  1  3  L   .  BA   A  1105  .  ?        ?     ?     ?     ?     ?     ?  
106  1  3  M   .  BA   A  1106  .  ?        ?     ?     ?     ?     ?     ?  
107  1  3  N   .  BA   A  1107  .  ?        ?     ?     ?     ?     ?     ?  
108  1  3  O   .  BA   A  1108  .  ?        ?     ?     ?     ?     ?     ?  
109  1  3  P   .  BA   A  1109  .  ?        ?     ?     ?     ?     ?     ?  
110  1  3  Q   .  BA   A  1110  .  ?        ?     ?     ?     ?     ?     ?  
111  1  3  R   .  BA   A  1111  .  ?        ?     ?     ?     ?     ?     ?  
112  1  3  S   .  BA   A  1112  .  ?        ?     ?     ?     ?     ?     ?  
113  1  4  T   .  K    A  1113  .  ?        ?     ?     ?     ?     ?     ?  
114  1  4  U   .  K    A  1114  .  ?        ?     ?     ?     ?     ?     ?  
#
loop_
_pdbx_vrpt_model_instance_geometry.ordinal
_pdbx_vrpt_model_instance_geometry.instance_id
_pdbx_vrpt_model_instance_geometry.RNA_score
_pdbx_vrpt_model_instance_geometry.RNA_suite
_pdbx_vrpt_model_instance_geometry.RNA_pucker
_pdbx_vrpt_model_instance_geometry.num_H_reduce
_pdbx_vrpt_model_instance_geometry.OWAB
_pdbx_vrpt_model_instance_geometry.num_bonds_RMSZ
_pdbx_vrpt_model_instance_geometry.bonds_RMSZ
_pdbx_vrpt_model_instance_geometry.num_angles_RMSZ
_pdbx_vrpt_model_instance_geometry.angles_RMSZ
_pdbx_vrpt_model_instance_geometry.program_for_bond_angle_geometry
_pdbx_vrpt_model_instance_geometry.average_occupancy
  1    1  0.00  NotAvailable       outlier    11   65.100    27  1.97    41  1.56  molprobity  1.000  
  2    2  0.00  Triaged/NotBinned  ?          11   45.140    26  0.27    41  0.88  molprobity  1.000  
  3    3  0.00  Triaged/NotBinned  ?          11   43.560    22  0.26    34  1.10  molprobity  1.000  
  4    4  0.00  Triaged/NotBinned  ?          10   42.590    22  0.41    34  0.67  molprobity  1.000  
  5    5  0.52  Rotameric          ?          10   41.700    22  0.26    34  0.70  molprobity  1.000  
  6    6  0.79  Rotameric          ?          11   36.800    25  0.46    39  0.81  molprobity  1.000  
  7    7  0.86  Rotameric          ?          10   36.300    22  0.30    34  0.90  molprobity  1.000  
  8    8  0.89  Rotameric          ?          11   35.450    22  0.24    34  0.57  molprobity  1.000  
  9    9  0.00  Triaged/NotBinned  outlier    11   68.130    25  0.52    39  2.21  molprobity  1.000  
 10   10  0.00  Triaged/NotBinned  ?          11   34.680    25  0.25    39  0.52  molprobity  1.000  
 11   11  0.44  Rotameric          ?          11   31.940    26  0.31    41  0.51  molprobity  1.000  
 12   12  0.26  Rotameric          ?          11   37.750    25  0.28    39  0.65  molprobity  1.000  
 13   13  0.49  Rotameric          ?          11   48.900    26  0.30    41  0.55  molprobity  1.000  
 14   14  0.26  Rotameric          ?          11   59.700    25  0.32    39  1.26  molprobity  1.000  
 15   15  0.00  Triaged/NotBinned  ?          11   44.390    26  0.27    41  0.93  molprobity  1.000  
 16   16  0.62  Rotameric          ?          11   38.460    26  0.29    41  1.06  molprobity  1.000  
 17   17  0.00  NonRotameric       ?          11   38.230    26  0.34    41  0.70  molprobity  1.000  
 18   18  0.00  Triaged/NotBinned  ?          11   39.630    26  0.36    41  1.98  molprobity  1.000  
 19   19  0.00  Triaged/NotBinned  ?          11   40.310    26  0.52    41  0.89  molprobity  1.000  
 20   20  0.27  Rotameric          ?          11   26.460    25  0.27    39  0.68  molprobity  1.000  
 21   21  0.79  Rotameric          ?          11   21.110    26  0.30    41  0.45  molprobity  1.000  
 22   22  0.82  Rotameric          ?          11   21.610    22  0.32    34  1.02  molprobity  1.000  
 23   23  0.45  Rotameric          ?          11   23.780    26  0.29    41  0.90  molprobity  1.000  
 24   24  0.00  NonRotameric       ?          11   25.950    25  0.29    39  1.14  molprobity  1.000  
 25   25  0.16  Rotameric          ?          11   32.170    22  0.26    34  0.91  molprobity  1.000  
 26   26  0.17  Rotameric          ?          10   34.340    22  0.41    34  0.95  molprobity  1.000  
 27   27  0.09  Rotameric          ?          11   40.270    26  0.32    41  1.03  molprobity  1.000  
 28   28  0.47  Rotameric          ?          11   37.190    26  0.42    41  1.06  molprobity  1.000  
 29   29  0.49  Rotameric          ?          11   33.160    22  0.40    34  0.82  molprobity  1.000  
 30   30  0.54  Rotameric          ?          11   26.310    26  0.36    41  0.54  molprobity  1.000  
 31   31  0.77  Rotameric          ?          11   24.530    22  0.51    34  0.68  molprobity  1.000  
 32   32  0.68  Rotameric          ?          11   26.110    26  0.31    41  0.85  molprobity  1.000  
 33   33  0.00  NonRotameric       outlier    11   28.630    25  0.37    39  1.83  molprobity  1.000  
 34   34  0.00  Triaged/NotBinned  ?          11   46.370    25  0.41    39  1.05  molprobity  1.000  
 35   35  0.00  Triaged/NotBinned  outlier    11   32.140    26  0.62    41  1.35  molprobity  1.000  
 36   36  0.00  Triaged/NotBinned  ?          11   24.220    25  0.40    39  1.18  molprobity  1.000  
 37   37  0.52  Rotameric          ?          11   28.450    25  0.21    39  0.68  molprobity  1.000  
 38   38  0.60  Rotameric          ?          11   30.980    22  0.28    34  1.07  molprobity  1.000  
 39   39  0.00  Triaged/NotBinned  ?          11   34.770    22  0.48    34  0.80  molprobity  1.000  
 40   40  0.58  Rotameric          ?          11   35.320    22  0.29    34  1.04  molprobity  1.000  
 41   41  0.00  Triaged/NotBinned  ?          11   36.870    22  0.35    34  1.10  molprobity  1.000  
 42   42  0.56  Rotameric          ?          11   32.570    26  0.38    41  0.68  molprobity  1.000  
 43   43  0.64  Rotameric          ?          11   31.820    26  0.34    41  0.76  molprobity  1.000  
 44   44  0.38  Rotameric          ?          11   33.660    22  0.21    34  0.91  molprobity  1.000  
 45   45  0.83  Rotameric          ?          11   38.290    25  0.29    39  0.80  molprobity  1.000  
 46   46  0.44  Rotameric          ?          11   43.470    25  0.32    39  0.63  molprobity  1.000  
 47   47  0.00  NonRotameric       ?          11   51.480    22  0.31    34  0.65  molprobity  1.000  
 48   48  0.04  Rotameric          ?          11   57.620    22  0.26    34  0.99  molprobity  1.000  
 49   49  0.00  Triaged/NotBinned  ?          11   72.260    25  0.27    39  0.88  molprobity  1.000  
 50   50  0.01  Rotameric          ?          11   73.690    26  0.22    41  0.96  molprobity  1.000  
 51   51  0.46  Rotameric          ?          11   55.060    25  0.25    39  0.67  molprobity  1.000  
 52   52  0.00  Triaged/NotBinned  ?          11   56.450    25  0.29    39  0.61  molprobity  1.000  
 53   53  0.47  Rotameric          ?          11   52.290    25  0.25    39  0.86  molprobity  1.000  
 54   54  0.00  NonRotameric       ?          10   56.020    22  0.43    34  0.68  molprobity  1.000  
 55   55  0.00  Triaged/NotBinned  ?          11   66.320    26  0.36    41  1.12  molprobity  1.000  
 56   56  0.22  Rotameric          ?          11   68.280    26  0.59    41  0.74  molprobity  1.000  
 57   57  0.05  Rotameric          ?          10   47.610    22  0.35    34  1.25  molprobity  1.000  
 58   58  0.24  Rotameric          ?          11   29.950    26  0.27    41  0.80  molprobity  1.000  
 59   59  0.01  Rotameric          ?          11   25.230    22  0.32    34  0.74  molprobity  1.000  
 60   60  0.00  NonRotameric       ?          11   24.460    22  0.36    34  0.92  molprobity  1.000  
 61   61  0.00  NonRotameric       ?          11   25.400    25  0.41    39  0.72  molprobity  1.000  
 62   62  0.41  Rotameric          ?          11   31.370    25  0.52    39  0.85  molprobity  1.000  
 63   63  0.04  Rotameric          ?          10   48.010    22  0.31    34  1.15  molprobity  1.000  
 64   64  0.08  Rotameric          outlier    10   31.500    22  0.44    34  0.97  molprobity  1.000  
 65   65  0.00  NonRotameric       ?          11   26.770    22  0.25    34  0.81  molprobity  1.000  
 66   66  0.79  Rotameric          ?          11   26.060    22  0.44    34  0.86  molprobity  1.000  
 67   67  0.46  Rotameric          ?          10   25.780    22  0.23    34  0.57  molprobity  1.000  
 68   68  0.82  Rotameric          ?          11   27.070    26  0.28    41  0.67  molprobity  1.000  
 69   69  0.00  Triaged/NotBinned  ?          11   25.250    22  0.38    34  0.90  molprobity  1.000  
 70   70  0.24  Rotameric          ?          11   26.540    25  0.26    39  0.69  molprobity  1.000  
 71   71  0.64  Rotameric          ?          11   30.000    26  0.34    41  0.66  molprobity  1.000  
 72   72  0.81  Rotameric          ?          11   27.500    22  0.31    34  1.04  molprobity  1.000  
 73   73  0.80  Rotameric          ?          11   32.410    26  0.29    41  0.53  molprobity  1.000  
 74   74  0.76  Rotameric          ?          11   38.160    26  0.31    41  0.84  molprobity  1.000  
 75   75  0.48  Rotameric          ?          11   46.810    25  0.68    39  0.73  molprobity  1.000  
 76   76  0.03  Rotameric          ?          11   38.080    25  0.29    39  0.79  molprobity  1.000  
 77   77  0.70  Rotameric          ?          11   37.890    25  0.31    39  0.74  molprobity  1.000  
 78   78  0.00  Triaged/NotBinned  ?          11   39.940    22  0.44    34  0.78  molprobity  1.000  
 79   79  0.73  Rotameric          ?          11   33.280    26  0.22    41  0.78  molprobity  1.000  
 80   80  0.84  Rotameric          ?          10   31.510    22  0.33    34  0.63  molprobity  1.000  
 81   81  0.56  Rotameric          ?          10   26.920    22  0.41    34  0.75  molprobity  1.000  
 82   82  0.15  Rotameric          ?          11   25.630    26  0.43    41  0.62  molprobity  1.000  
 83   83  0.00  Triaged/NotBinned  ?          11   27.860    25  0.38    39  0.98  molprobity  1.000  
 84   84  0.77  Rotameric          ?          11   27.740    25  0.29    39  0.57  molprobity  1.000  
 85   85  0.78  Rotameric          ?          11   29.400    25  0.26    39  0.96  molprobity  1.000  
 86   86  0.58  Rotameric          ?          11   27.340    26  0.32    41  0.69  molprobity  1.000  
 87   87  0.50  Rotameric          ?          11   28.690    25  0.53    39  0.63  molprobity  1.000  
 88   88  0.65  Rotameric          ?          10   33.320    22  0.32    34  0.89  molprobity  1.000  
 89   89  0.69  Rotameric          ?          11   45.100    26  0.44    41  0.82  molprobity  1.000  
 90   90  0.00  Triaged/NotBinned  ?          11   50.500    25  0.51    39  0.70  molprobity  1.000  
 91   91  0.81  Rotameric          ?          11   50.340    26  0.33    41  0.87  molprobity  1.000  
 92   92  0.00  Triaged/NotBinned  ?          11   47.740    22  0.72    34  0.91  molprobity  1.000  
 93   93  0.49  Rotameric          ?          11   45.410    22  0.26    34  1.18  molprobity  1.000  
 94   94  0.69  Rotameric          ?          12   52.260    25  0.29    37  0.60  molprobity  1.000  
 95   95     ?  ?                  ?          22   28.550    24  1.29    23  1.78  mogul       1.000  
 96   96     ?  ?                  ?           ?   48.420     ?     ?     ?     ?  ?           1.000  
 97   97     ?  ?                  ?           ?   48.820     ?     ?     ?     ?  ?           1.000  
 98   98     ?  ?                  ?           ?   48.090     ?     ?     ?     ?  ?           1.000  
 99   99     ?  ?                  ?           ?   85.090     ?     ?     ?     ?  ?           1.000  
100  100     ?  ?                  ?           ?   38.860     ?     ?     ?     ?  ?           1.000  
101  101     ?  ?                  ?           ?   82.360     ?     ?     ?     ?  ?           1.000  
102  102     ?  ?                  ?           ?   37.000     ?     ?     ?     ?  ?           1.000  
103  103     ?  ?                  ?           ?   26.330     ?     ?     ?     ?  ?           1.000  
104  104     ?  ?                  ?           ?   63.930     ?     ?     ?     ?  ?           1.000  
105  105     ?  ?                  ?           ?   35.360     ?     ?     ?     ?  ?           1.000  
106  106     ?  ?                  ?           ?  151.280     ?     ?     ?     ?  ?           1.000  
107  107     ?  ?                  ?           ?   49.690     ?     ?     ?     ?  ?           1.000  
108  108     ?  ?                  ?           ?   98.400     ?     ?     ?     ?  ?           1.000  
109  109     ?  ?                  ?           ?   75.620     ?     ?     ?     ?  ?           1.000  
110  110     ?  ?                  ?           ?  159.310     ?     ?     ?     ?  ?           1.000  
111  111     ?  ?                  ?           ?  122.920     ?     ?     ?     ?  ?           1.000  
112  112     ?  ?                  ?           ?  150.530     ?     ?     ?     ?  ?           1.000  
113  113     ?  ?                  ?           ?   42.250     ?     ?     ?     ?  ?           1.000  
114  114     ?  ?                  ?           ?   37.020     ?     ?     ?     ?  ?           1.000  
#
loop_
_pdbx_vrpt_instance_clashes.ordinal
_pdbx_vrpt_instance_clashes.instance_id
_pdbx_vrpt_instance_clashes.label_atom_id
_pdbx_vrpt_instance_clashes.cid
_pdbx_vrpt_instance_clashes.clashmag
_pdbx_vrpt_instance_clashes.dist
 1   1  N2       1  0.52  2.25  
 2   2  "H1'"    1  0.52  2.25  
 3   3  "C2'"    2  0.49  2.42  
 4   3  "O2'"    3  0.43  2.18  
 5   4  "H5'"    2  0.49  2.42  
 6   4  "H5'"    3  0.43  2.18  
 7   5  "H2'"    4  0.49  2.47  
 8   6  C8       4  0.49  2.47  
 9  15  H8       5  0.43  2.02  
10  15  OP2      5  0.43  2.02  
11  15  OP2      6  0.42  2.73  
12  15  C8       6  0.42  2.73  
13  17  "C2'"    7  0.47  2.45  
14  17  "H2'"    8  0.43  2.01  
15  18  "H5'"    7  0.47  2.45  
16  18  "H5'"    8  0.43  2.01  
17  18  C6       9  0.42  2.87  
18  19  N2      10  0.92  2.01  
19  19  N2      11  0.92  1.67  
20  19  H1      12  0.87  0.92  
21  19  H1      13  0.48  2.25  
22  19  N1      14  0.54  2.06  
23  19  N1       9  0.42  2.87  
24  19  C2      15  0.44  2.39  
25  20  N6      16  0.63  2.14  
26  20  H61     17  0.40  1.82  
27  28  "H2'"   18  0.46  2.15  
28  29  "O4'"   18  0.46  2.15  
29  30  "H2'"   19  0.41  1.86  
30  31  H6      19  0.41  1.86  
31  35  "O2'"   10  0.92  2.01  
32  35  "O2'"   14  0.54  2.06  
33  35  "O2'"   15  0.44  2.39  
34  35  "HO2'"  11  0.92  1.67  
35  35  "HO2'"  12  0.87  0.92  
36  35  OP1     20  0.77  1.85  
37  35  OP1     21  0.65  2.45  
38  35  "H4'"   20  0.77  1.85  
39  35  "C4'"   21  0.65  2.45  
40  35  "H1'"   16  0.63  2.14  
41  35  "H1'"   17  0.40  1.82  
42  35  C8      22  0.55  2.41  
43  35  "H5''"  22  0.55  2.41  
44  35  "C2'"   13  0.48  2.25  
45  38  "O2'"   23  0.42  2.20  
46  38  "C2'"   24  0.40  2.52  
47  39  "H5'"   23  0.42  2.20  
48  39  "H5'"   24  0.40  2.52  
49  43  "H2'"   25  0.45  1.81  
50  44  H6      25  0.45  1.81  
51  45  "H2'"   26  0.42  2.55  
52  46  "H1'"   27  0.56  1.70  
53  46  C8      26  0.42  2.55  
54  47  H5      27  0.56  1.70  
55  48  "C2'"   28  0.48  2.44  
56  48  O2      29  0.42  2.53  
57  49  "H2'"   30  0.56  2.06  
58  49  "H5'"   28  0.48  2.44  
59  49  "C2'"   31  0.46  2.63  
60  50  "O5'"   30  0.56  2.06  
61  50  "O5'"   31  0.46  2.63  
62  50  N2      32  0.41  2.53  
63  53  OP2     32  0.41  2.53  
64  56  H8      33  0.44  2.01  
65  56  "O5'"   33  0.44  2.01  
66  56  N2      29  0.42  2.53  
67  62  "H2'"   34  0.43  2.19  
68  63  OP1     34  0.43  2.19  
69  77  "H2'"   35  0.47  2.15  
70  78  "O4'"   35  0.47  2.15  
71  80  "H2'"   36  0.73  2.23  
72  81  C6      36  0.73  2.23  
73  86  "O2'"   37  0.49  2.12  
74  87  "H5'"   37  0.49  2.12  
#
_pdbx_vrpt_instance_intra_bond_outliers.ordinal      1
_pdbx_vrpt_instance_intra_bond_outliers.instance_id  1
_pdbx_vrpt_instance_intra_bond_outliers.atom_1       OP3
_pdbx_vrpt_instance_intra_bond_outliers.atom_2       P
_pdbx_vrpt_instance_intra_bond_outliers.obs          1.489
_pdbx_vrpt_instance_intra_bond_outliers.mean         1.607
_pdbx_vrpt_instance_intra_bond_outliers.stdev        0.012
_pdbx_vrpt_instance_intra_bond_outliers.Z            -9.86
#
loop_
_pdbx_vrpt_instance_intra_angle_outliers.ordinal
_pdbx_vrpt_instance_intra_angle_outliers.instance_id
_pdbx_vrpt_instance_intra_angle_outliers.atom_1
_pdbx_vrpt_instance_intra_angle_outliers.atom_2
_pdbx_vrpt_instance_intra_angle_outliers.atom_3
_pdbx_vrpt_instance_intra_angle_outliers.obs
_pdbx_vrpt_instance_intra_angle_outliers.mean
_pdbx_vrpt_instance_intra_angle_outliers.stdev
_pdbx_vrpt_instance_intra_angle_outliers.Z
_pdbx_vrpt_instance_intra_angle_outliers.link
1   1  P      "O3'"  "C3'"  127.661  119.700  1.200   6.63  Y     
2   9  P      "O3'"  "C3'"  132.552  119.700  1.200  10.71  Y     
3  16  P      "O3'"  "C3'"  113.596  119.700  1.200  -5.09  Y     
4  18  P      "O3'"  "C3'"  129.849  119.700  1.200   8.46  Y     
5  18  "C2'"  "C3'"  "O3'"  123.832  113.700  1.600   6.33  ?     
6  33  P      "O3'"  "C3'"  131.905  119.700  1.200  10.17  Y     
7  36  P      "O3'"  "C3'"  126.765  119.700  1.200   5.89  Y     
8  38  P      "O3'"  "C3'"  113.330  119.700  1.200  -5.31  Y     
9  93  P      "O3'"  "C3'"  112.320  119.700  1.200  -6.15  Y     
#
loop_
_pdbx_vrpt_instance_mogul_bond_outliers.ordinal
_pdbx_vrpt_instance_mogul_bond_outliers.instance_id
_pdbx_vrpt_instance_mogul_bond_outliers.atom_1
_pdbx_vrpt_instance_mogul_bond_outliers.atom_2
_pdbx_vrpt_instance_mogul_bond_outliers.obsval
_pdbx_vrpt_instance_mogul_bond_outliers.mean
_pdbx_vrpt_instance_mogul_bond_outliers.numobs
_pdbx_vrpt_instance_mogul_bond_outliers.stdev
_pdbx_vrpt_instance_mogul_bond_outliers.Zscore
_pdbx_vrpt_instance_mogul_bond_outliers.mindiff
1  95  C2  N1  1.39  1.33  3580  0.02  2.93  0.00  
2  95  C2  N3  1.38  1.32   173  0.02  3.95  0.00  
#
loop_
_pdbx_vrpt_instance_mogul_angle_outliers.ordinal
_pdbx_vrpt_instance_mogul_angle_outliers.instance_id
_pdbx_vrpt_instance_mogul_angle_outliers.atom_1
_pdbx_vrpt_instance_mogul_angle_outliers.atom_2
_pdbx_vrpt_instance_mogul_angle_outliers.atom_3
_pdbx_vrpt_instance_mogul_angle_outliers.obsval
_pdbx_vrpt_instance_mogul_angle_outliers.mean
_pdbx_vrpt_instance_mogul_angle_outliers.numobs
_pdbx_vrpt_instance_mogul_angle_outliers.stdev
_pdbx_vrpt_instance_mogul_angle_outliers.Zscore
_pdbx_vrpt_instance_mogul_angle_outliers.mindiff
1  95  OXT    C      CA     122.80  113.38   639  3.41   2.76  0.04  
2  95  OXT    C      O      117.65  124.09  7200  2.27  -2.84  0.04  
3  95  "C3'"  "C2'"  "C1'"  104.12  100.98    21  1.51   2.08  0.82  
4  95  N3     C2     N1     118.90  128.68   136  1.56  -6.26  5.39  
#
loop_
_pdbx_vrpt_instance_mogul_torsion_outliers.ordinal
_pdbx_vrpt_instance_mogul_torsion_outliers.instance_id
_pdbx_vrpt_instance_mogul_torsion_outliers.atom_1
_pdbx_vrpt_instance_mogul_torsion_outliers.atom_2
_pdbx_vrpt_instance_mogul_torsion_outliers.atom_3
_pdbx_vrpt_instance_mogul_torsion_outliers.atom_4
_pdbx_vrpt_instance_mogul_torsion_outliers.obsval
_pdbx_vrpt_instance_mogul_torsion_outliers.mean
_pdbx_vrpt_instance_mogul_torsion_outliers.numobs
_pdbx_vrpt_instance_mogul_torsion_outliers.stdev
_pdbx_vrpt_instance_mogul_torsion_outliers.mindiff
_pdbx_vrpt_instance_mogul_torsion_outliers.local_density
1  95  O    C   CA  CB     -43.58  54.48  439  23.91  0.05  2.51  
2  95  OXT  C   CA  CB     136.72  55.56  439  23.03  0.37  2.73  
3  95  C    CA  CB  CG     143.97  44.21   85  28.61  4.70  3.53  
4  95  CB   CG  SD  "C5'"  -29.96  72.11   41  52.32  1.43  4.88  
#
loop_
_pdbx_vrpt_model_instance_density.ordinal
_pdbx_vrpt_model_instance_density.instance_id
_pdbx_vrpt_model_instance_density.natoms_eds
_pdbx_vrpt_model_instance_density.RSRCC
_pdbx_vrpt_model_instance_density.RSR
_pdbx_vrpt_model_instance_density.RSRZ
  1    1  24  0.791  0.208   0.712  
  2    2  23  0.955  0.137  -0.380  
  3    3  20  0.954  0.194   0.354  
  4    4  20  0.961  0.182   0.128  
  5    5  20  0.972  0.156  -0.198  
  6    6  22  0.959  0.166  -0.057  
  7    7  20  0.972  0.123  -0.612  
  8    8  20  0.959  0.193   0.340  
  9    9  22  0.909  0.264   1.376  
 10   10  22  0.968  0.130  -0.583  
 11   11  23  0.956  0.135  -0.411  
 12   12  22  0.957  0.140  -0.437  
 13   13  23  0.930  0.188   0.405  
 14   14  22  0.935  0.196   0.382  
 15   15  23  0.934  0.224   0.958  
 16   16  23  0.962  0.167   0.082  
 17   17  23  0.963  0.135  -0.411  
 18   18  23  0.958  0.138  -0.365  
 19   19  23  0.951  0.146  -0.242  
 20   20  22  0.972  0.144  -0.379  
 21   21  23  0.972  0.150  -0.180  
 22   22  20  0.978  0.145  -0.321  
 23   23  23  0.978  0.155  -0.103  
 24   24  22  0.973  0.141  -0.423  
 25   25  20  0.980  0.176   0.106  
 26   26  20  0.971  0.158  -0.173  
 27   27  23  0.971  0.136  -0.395  
 28   28  23  0.967  0.158  -0.057  
 29   29  20  0.962  0.196   0.382  
 30   30  23  0.970  0.162   0.005  
 31   31  20  0.970  0.149  -0.266  
 32   32  23  0.973  0.127  -0.534  
 33   33  22  0.970  0.139  -0.452  
 34   34  22  0.945  0.154  -0.232  
 35   35  23  0.948  0.144  -0.272  
 36   36  22  0.979  0.125  -0.656  
 37   37  22  0.967  0.182   0.177  
 38   38  20  0.966  0.156  -0.169  
 39   39  20  0.957  0.183   0.202  
 40   40  20  0.961  0.163  -0.073  
 41   41  20  0.969  0.137  -0.431  
 42   42  23  0.953  0.152  -0.149  
 43   43  23  0.958  0.128  -0.518  
 44   44  20  0.962  0.123  -0.624  
 45   45  22  0.976  0.169  -0.013  
 46   46  22  0.958  0.188   0.265  
 47   47  20  0.955  0.208   0.547  
 48   48  20  0.906  0.209   0.561  
 49   49  22  0.910  0.194   0.352  
 50   50  23  0.819  0.176   0.220  
 51   51  22  0.944  0.155  -0.218  
 52   52  22  0.947  0.153  -0.247  
 53   53  22  0.938  0.226   0.820  
 54   54  20  0.951  0.239   0.842  
 55   55  23  0.912  0.208   0.712  
 56   56  23  0.845  0.293   2.020  
 57   57  20  0.950  0.187   0.190  
 58   58  23  0.972  0.159  -0.042  
 59   59  20  0.971  0.163  -0.073  
 60   60  20  0.982  0.105  -0.872  
 61   61  22  0.967  0.141  -0.423  
 62   62  22  0.953  0.175   0.075  
 63   63  20  0.970  0.188   0.203  
 64   64  20  0.963  0.190   0.228  
 65   65  20  0.973  0.193   0.340  
 66   66  20  0.962  0.180   0.161  
 67   67  20  0.979  0.123  -0.612  
 68   68  23  0.968  0.142  -0.303  
 69   69  20  0.969  0.149  -0.266  
 70   70  22  0.973  0.127  -0.627  
 71   71  23  0.971  0.155  -0.103  
 72   72  20  0.973  0.132  -0.500  
 73   73  23  0.970  0.134  -0.426  
 74   74  23  0.958  0.144  -0.272  
 75   75  22  0.944  0.183   0.192  
 76   76  22  0.965  0.137  -0.481  
 77   77  22  0.964  0.193   0.338  
 78   78  20  0.977  0.135  -0.459  
 79   79  23  0.966  0.139  -0.349  
 80   80  20  0.965  0.156  -0.198  
 81   81  20  0.972  0.132  -0.499  
 82   82  23  0.982  0.111  -0.780  
 83   83  22  0.975  0.124  -0.671  
 84   84  22  0.963  0.134  -0.525  
 85   85  22  0.973  0.135  -0.510  
 86   86  23  0.962  0.154  -0.118  
 87   87  22  0.971  0.127  -0.627  
 88   88  20  0.975  0.127  -0.561  
 89   89  23  0.948  0.179   0.266  
 90   90  22  0.931  0.216   0.674  
 91   91  23  0.934  0.190   0.435  
 92   92  20  0.965  0.206   0.519  
 93   93  20  0.944  0.227   0.809  
 94   94  23  0.870  0.279   1.805  
 95   95  27  0.974  0.193       ?  
 96   96   1  0.997  0.082       ?  
 97   97   1  0.944  0.168       ?  
 98   98   1  0.960  0.130       ?  
 99   99   1  0.964  0.044       ?  
100  100   1  0.959  0.206       ?  
101  101   1  0.957  0.064       ?  
102  102   1  0.977  0.111       ?  
103  103   1  0.992  0.167       ?  
104  104   1  0.997  0.047       ?  
105  105   1  0.998  0.126       ?  
106  106   1  0.982  0.075       ?  
107  107   1  0.989  0.116       ?  
108  108   1  0.985  0.037       ?  
109  109   1  0.979  0.098       ?  
110  110   1  0.981  0.050       ?  
111  111   1  0.866  0.065       ?  
112  112   1  0.980  0.123       ?  
113  113   1  0.949  0.173       ?  
114  114   1  0.987  0.178       ?  
#
loop_
_pdbx_vrpt_software.ordinal
_pdbx_vrpt_software.name
_pdbx_vrpt_software.version
_pdbx_vrpt_software.success_y_or_n
1  molprobity   4.02b-467                                                             Y  
2  mogul        "1.8.4, CSD as541be (2020)"                                           Y  
3  eds          2.36                                                                  Y  
4  dcc          '"2.27  (2023-04-10)"'                                                Y  
5  xtriage      1.13                                                                  Y  
6  percentiles  "20191225.v01 (using entries in the PDB archive December 25th 2019)"  Y  
##
