data_3LT9

_pdbx_vrpt_database.id    PDB
_pdbx_vrpt_database.code  3LT9
#
_pdbx_vrpt_exptl.ordinal  1
_pdbx_vrpt_exptl.method   x-ray
#
_pdbx_vrpt_summary.entry_id                    3LT9
_pdbx_vrpt_summary.PDB_deposition_date         2010-02-15
_pdbx_vrpt_summary.PDB_revision_number         3
_pdbx_vrpt_summary.PDB_revision_date           2023-09-06
_pdbx_vrpt_summary.report_creation_date        2023-08-29:08:27
_pdbx_vrpt_summary.attempted_validation_steps  molprobity,validation-pack,xtriage,eds,mogul,buster-report,percentiles,writexml,writecif,writepdf
_pdbx_vrpt_summary.ligands_for_buster_report   Y
#
loop_
_pdbx_vrpt_entity.id
_pdbx_vrpt_entity.type
_pdbx_vrpt_entity.description
1  polymer      "ATP BINDING PROTEIN-D65V"  
2  non-polymer  "ZINC ION"  
3  non-polymer  "ADENOSINE-5'-DIPHOSPHATE"  
4  non-polymer  DI(HYDROXYETHYL)ETHER  
5  non-polymer  "CHLORIDE ION"  
6  water        water  
#
loop_
_pdbx_vrpt_asym.label_asym_id
_pdbx_vrpt_asym.entity_id
A  1  
B  2  
C  3  
D  4  
E  4  
F  4  
G  5  
H  6  
#
loop_
_pdbx_vrpt_percentile_list.id
_pdbx_vrpt_percentile_list.range
_pdbx_vrpt_percentile_list.exp_method
1  all   x-ray  
2  2.55  x-ray  
#
loop_
_pdbx_vrpt_percentile_type.id
_pdbx_vrpt_percentile_type.type
1  all_atom_clashscore           
2  Ramachandran_outlier_percent  
3  rotamer_outliers_percent      
4  RSRZ_outliers_percent         
5  R_value_R_free                
#
loop_
_pdbx_vrpt_percentile_conditions.id
_pdbx_vrpt_percentile_conditions.percentile_list_id
_pdbx_vrpt_percentile_conditions.type_id
_pdbx_vrpt_percentile_conditions.rank
_pdbx_vrpt_percentile_conditions.number_entries_total
_pdbx_vrpt_percentile_conditions.res_high
_pdbx_vrpt_percentile_conditions.res_low
 1  1  1   39.72  141614     ?     ?  
 2  2  1   45.87    1332  2.52  2.56  
 3  1  2   10.08  138981     ?     ?  
 4  2  2   13.69    1315  2.52  2.56  
 5  1  3   17.99  138945     ?     ?  
 6  2  3   23.73    1315  2.52  2.56  
 7  1  4  100.00  127900     ?     ?  
 8  2  4  100.00    1272  2.52  2.56  
 9  1  5   46.99  130704     ?     ?  
10  2  5   75.36    1284  2.52  2.56  
#
loop_
_pdbx_vrpt_percentile_entity_view.ordinal
_pdbx_vrpt_percentile_entity_view.conditions_id
_pdbx_vrpt_percentile_entity_view.type_id
_pdbx_vrpt_percentile_entity_view.label_asym_id
_pdbx_vrpt_percentile_entity_view.PDB_model_num
_pdbx_vrpt_percentile_entity_view.entity_id
_pdbx_vrpt_percentile_entity_view.auth_asym_id
_pdbx_vrpt_percentile_entity_view.rank
1  3  2  A  1  1  A   10.08  
2  4  2  A  1  1  A   13.69  
3  5  3  A  1  1  A   17.99  
4  6  3  A  1  1  A   23.73  
5  7  4  A  1  1  A  100.00  
6  8  4  A  1  1  A  100.00  
#
_pdbx_vrpt_summary_entity_geometry.ordinal          1
_pdbx_vrpt_summary_entity_geometry.PDB_model_num    1
_pdbx_vrpt_summary_entity_geometry.entity_id        1
_pdbx_vrpt_summary_entity_geometry.label_asym_id    A
_pdbx_vrpt_summary_entity_geometry.auth_asym_id     A
_pdbx_vrpt_summary_entity_geometry.angles_RMSZ      0.74
_pdbx_vrpt_summary_entity_geometry.bonds_RMSZ       0.66
_pdbx_vrpt_summary_entity_geometry.num_bonds_RMSZ   598
_pdbx_vrpt_summary_entity_geometry.num_angles_RMSZ  806
#
_pdbx_vrpt_summary_geometry.ordinal                        1
_pdbx_vrpt_summary_geometry.percent_ramachandran_outliers  1.49
_pdbx_vrpt_summary_geometry.percent_rotamer_outliers       6.15
_pdbx_vrpt_summary_geometry.clashscore                     7.25
_pdbx_vrpt_summary_geometry.num_H_reduce                   608
_pdbx_vrpt_summary_geometry.num_bonds_RMSZ                 598
_pdbx_vrpt_summary_geometry.bonds_RMSZ                     0.66
_pdbx_vrpt_summary_geometry.num_angles_RMSZ                806
_pdbx_vrpt_summary_geometry.angles_RMSZ                    0.74
#
_pdbx_vrpt_summary_diffraction.exp_method                x-ray
_pdbx_vrpt_summary_diffraction.ordinal                   1
_pdbx_vrpt_summary_diffraction.Babinet_b                 119.383
_pdbx_vrpt_summary_diffraction.bulk_solvent_b            37.532
_pdbx_vrpt_summary_diffraction.Wilson_B_estimate         37.200
_pdbx_vrpt_summary_diffraction.I_over_sigma              5.80(2.54A)
_pdbx_vrpt_summary_diffraction.num_miller_indices        5560
_pdbx_vrpt_summary_diffraction.Babinet_k                 0.231
_pdbx_vrpt_summary_diffraction.bulk_solvent_k            0.349
_pdbx_vrpt_summary_diffraction.Padilla_Yeates_L_mean     0.484
_pdbx_vrpt_summary_diffraction.Padilla_Yeates_L2_mean    0.313
_pdbx_vrpt_summary_diffraction.Fo_Fc_correlation         0.946
_pdbx_vrpt_summary_diffraction.twin_fraction             -h,-k,l:0.048
_pdbx_vrpt_summary_diffraction.DCC_R                     0.18
_pdbx_vrpt_summary_diffraction.DCC_Rfree                 0.24
_pdbx_vrpt_summary_diffraction.EDS_R                     0.18
_pdbx_vrpt_summary_diffraction.EDS_res_high              2.55
_pdbx_vrpt_summary_diffraction.EDS_res_low               41.35
_pdbx_vrpt_summary_diffraction.Wilson_B_aniso            "[37.510,37.510,36.491,-0.000,0.000,0.000]"
_pdbx_vrpt_summary_diffraction.data_anisotropy           0.027
_pdbx_vrpt_summary_diffraction.trans_NCS_details         "The largest off-origin peak in the Patterson function is 7.33% of the height of the origin peak. No significant pseudotranslation is detected."
_pdbx_vrpt_summary_diffraction.B_factor_type             FULL
_pdbx_vrpt_summary_diffraction.acentric_outliers         0
_pdbx_vrpt_summary_diffraction.centric_outliers          0
_pdbx_vrpt_summary_diffraction.data_completeness         99.93
_pdbx_vrpt_summary_diffraction.number_reflns_R_free      251
_pdbx_vrpt_summary_diffraction.percent_free_reflections  4.51
_pdbx_vrpt_summary_diffraction.percent_RSRZ_outliers     0.00
_pdbx_vrpt_summary_diffraction.PDB_resolution_high       2.55
_pdbx_vrpt_summary_diffraction.PDB_resolution_low        41.34
_pdbx_vrpt_summary_diffraction.PDB_R                     0.18
_pdbx_vrpt_summary_diffraction.PDB_Rfree                 0.24
#
loop_
_pdbx_vrpt_model_instance.id
_pdbx_vrpt_model_instance.PDB_model_num
_pdbx_vrpt_model_instance.entity_id
_pdbx_vrpt_model_instance.label_asym_id
_pdbx_vrpt_model_instance.label_seq_id
_pdbx_vrpt_model_instance.label_comp_id
_pdbx_vrpt_model_instance.auth_asym_id
_pdbx_vrpt_model_instance.auth_seq_id
_pdbx_vrpt_model_instance.label_alt_id
_pdbx_vrpt_model_instance.PDB_ins_code
_pdbx_vrpt_model_instance.count_clashes
_pdbx_vrpt_model_instance.count_mogul_bond_outliers
_pdbx_vrpt_model_instance.count_mogul_angle_outliers
_pdbx_vrpt_model_instance.count_mogul_torsion_outliers
  1  1  1  A   7  ASP  A    5  .  ?        ?     ?     ?     ?  
  2  1  1  A   8  ASP  A    6  .  ?        ?     ?     ?     ?  
  3  1  1  A   9  ASP  A    7  .  ?        ?     ?     ?     ?  
  4  1  1  A  10  ASP  A    8  .  ?        ?     ?     ?     ?  
  5  1  1  A  11  LYS  A    9  .  ?        ?     ?     ?     ?  
  6  1  1  A  12  LYS  A   10  .  ?        ?     ?     ?     ?  
  7  1  1  A  13  THR  A   11  .  ?        ?     ?     ?     ?  
  8  1  1  A  14  ASN  A   12  .  ?        ?     ?     ?     ?  
  9  1  1  A  15  TRP  A   13  .  ?        ?     ?     ?     ?  
 10  1  1  A  16  LEU  A   14  .  ?        ?     ?     ?     ?  
 11  1  1  A  17  LYS  A   15  .  ?        ?     ?     ?     ?  
 12  1  1  A  18  ARG  A   16  .  ?        ?     ?     ?     ?  
 13  1  1  A  19  ILE  A   17  .  ?        ?     ?     ?     ?  
 14  1  1  A  20  TYR  A   18  .  ?        ?     ?     ?     ?  
 15  1  1  A  21  ARG  A   19  .  ?        ?     ?     ?     ?  
 16  1  1  A  22  VAL  A   20  .  ?        ?     ?     ?     ?  
 17  1  1  A  23  ARG  A   21  .  ?        1     ?     ?     ?  
 18  1  1  A  24  PRO  A   22  .  ?        ?     ?     ?     ?  
 19  1  1  A  25  CYS  A   23  .  ?        ?     ?     ?     ?  
 20  1  1  A  26  VAL  A   24  .  ?        ?     ?     ?     ?  
 21  1  1  A  27  LYS  A   25  .  ?        ?     ?     ?     ?  
 22  1  1  A  28  CYS  A   26  .  ?        2     ?     ?     ?  
 23  1  1  A  29  LYS  A   27  .  ?        1     ?     ?     ?  
 24  1  1  A  30  VAL  A   28  .  ?        ?     ?     ?     ?  
 25  1  1  A  31  ALA  A   29  .  ?        ?     ?     ?     ?  
 26  1  1  A  32  PRO  A   30  .  ?        ?     ?     ?     ?  
 27  1  1  A  33  ARG  A   31  .  ?        ?     ?     ?     ?  
 28  1  1  A  34  ASN  A   32  .  ?        ?     ?     ?     ?  
 29  1  1  A  35  TRP  A   33  .  ?        ?     ?     ?     ?  
 30  1  1  A  36  LYS  A   34  .  ?        ?     ?     ?     ?  
 31  1  1  A  37  VAL  A   35  .  ?        ?     ?     ?     ?  
 32  1  1  A  38  LYS  A   36  .  ?        4     ?     ?     ?  
 33  1  1  A  39  ASN  A   37  .  ?        3     ?     ?     ?  
 34  1  1  A  40  LYS  A   38  .  ?        3     ?     ?     ?  
 35  1  1  A  41  HIS  A   39  .  ?        ?     ?     ?     ?  
 36  1  1  A  42  LEU  A   40  .  ?        ?     ?     ?     ?  
 37  1  1  A  43  ARG  A   41  .  ?        ?     ?     ?     ?  
 38  1  1  A  44  ILE  A   42  .  ?        ?     ?     ?     ?  
 39  1  1  A  45  TYR  A   43  .  ?        1     ?     ?     ?  
 40  1  1  A  46  ASN  A   44  .  ?        ?     ?     ?     ?  
 41  1  1  A  47  MET  A   45  .  ?        ?     ?     ?     ?  
 42  1  1  A  48  CYS  A   46  .  ?        ?     ?     ?     ?  
 43  1  1  A  49  LYS  A   47  .  ?        ?     ?     ?     ?  
 44  1  1  A  50  THR  A   48  .  ?        ?     ?     ?     ?  
 45  1  1  A  51  CYS  A   49  .  ?        1     ?     ?     ?  
 46  1  1  A  52  PHE  A   50  .  ?        ?     ?     ?     ?  
 47  1  1  A  53  ASN  A   51  .  ?        ?     ?     ?     ?  
 48  1  1  A  54  ASN  A   52  .  ?        ?     ?     ?     ?  
 49  1  1  A  55  SER  A   53  .  ?        ?     ?     ?     ?  
 50  1  1  A  56  ILE  A   54  .  ?        ?     ?     ?     ?  
 51  1  1  A  57  ASP  A   55  .  ?        ?     ?     ?     ?  
 52  1  1  A  58  ILE  A   56  .  ?        ?     ?     ?     ?  
 53  1  1  A  59  GLY  A   57  .  ?        ?     ?     ?     ?  
 54  1  1  A  60  ASP  A   58  .  ?        ?     ?     ?     ?  
 55  1  1  A  61  ASP  A   59  .  ?        ?     ?     ?     ?  
 56  1  1  A  62  THR  A   60  .  ?        ?     ?     ?     ?  
 57  1  1  A  63  TYR  A   61  .  ?        ?     ?     ?     ?  
 58  1  1  A  64  HIS  A   62  .  ?        ?     ?     ?     ?  
 59  1  1  A  65  GLY  A   63  .  ?        ?     ?     ?     ?  
 60  1  1  A  66  HIS  A   64  .  ?        ?     ?     ?     ?  
 61  1  1  A  67  VAL  A   65  .  ?        ?     ?     ?     ?  
 62  1  1  A  68  ASP  A   66  .  ?        ?     ?     ?     ?  
 63  1  1  A  69  TRP  A   67  .  ?        ?     ?     ?     ?  
 64  1  1  A  70  LEU  A   68  .  ?        ?     ?     ?     ?  
 65  1  1  A  71  MET  A   69  .  ?        ?     ?     ?     ?  
 66  1  1  A  72  TYR  A   70  .  ?        ?     ?     ?     ?  
 67  1  1  A  73  ALA  A   71  .  ?        ?     ?     ?     ?  
 68  1  1  A  74  ASP  A   72  .  ?        ?     ?     ?     ?  
 69  1  1  A  75  SER  A   73  .  ?        ?     ?     ?     ?  
 70  1  2  B   .  ZN   A   80  .  ?        ?     ?     ?     ?  
 71  1  3  C   .  ADP  A   81  .  ?        1     1     5     5  
 72  1  4  D   .  PEG  A   82  .  ?        ?     ?     ?     2  
 73  1  4  E   .  PEG  A   83  .  ?        1     ?     ?     3  
 74  1  4  F   .  PEG  A   84  .  ?        ?     ?     ?     1  
 75  1  5  G   .  CL   A   85  .  ?        ?     ?     ?     ?  
 76  1  6  H   .  HOH  A   86  .  ?        ?     ?     ?     ?  
 77  1  6  H   .  HOH  A   87  .  ?        ?     ?     ?     ?  
 78  1  6  H   .  HOH  A   88  .  ?        ?     ?     ?     ?  
 79  1  6  H   .  HOH  A   89  .  ?        ?     ?     ?     ?  
 80  1  6  H   .  HOH  A   90  .  ?        ?     ?     ?     ?  
 81  1  6  H   .  HOH  A   91  .  ?        ?     ?     ?     ?  
 82  1  6  H   .  HOH  A   92  .  ?        ?     ?     ?     ?  
 83  1  6  H   .  HOH  A   93  .  ?        ?     ?     ?     ?  
 84  1  6  H   .  HOH  A   94  .  ?        ?     ?     ?     ?  
 85  1  6  H   .  HOH  A   95  .  ?        ?     ?     ?     ?  
 86  1  6  H   .  HOH  A   96  .  ?        ?     ?     ?     ?  
 87  1  6  H   .  HOH  A   97  .  ?        ?     ?     ?     ?  
 88  1  6  H   .  HOH  A   98  .  ?        ?     ?     ?     ?  
 89  1  6  H   .  HOH  A   99  .  ?        ?     ?     ?     ?  
 90  1  6  H   .  HOH  A  100  .  ?        ?     ?     ?     ?  
 91  1  6  H   .  HOH  A  101  .  ?        ?     ?     ?     ?  
 92  1  6  H   .  HOH  A  102  .  ?        ?     ?     ?     ?  
 93  1  6  H   .  HOH  A  103  .  ?        ?     ?     ?     ?  
 94  1  6  H   .  HOH  A  104  .  ?        ?     ?     ?     ?  
 95  1  6  H   .  HOH  A  105  .  ?        ?     ?     ?     ?  
 96  1  6  H   .  HOH  A  106  .  ?        ?     ?     ?     ?  
 97  1  6  H   .  HOH  A  107  .  ?        ?     ?     ?     ?  
 98  1  6  H   .  HOH  A  108  .  ?        ?     ?     ?     ?  
 99  1  6  H   .  HOH  A  109  .  ?        ?     ?     ?     ?  
100  1  6  H   .  HOH  A  110  .  ?        ?     ?     ?     ?  
101  1  6  H   .  HOH  A  111  .  ?        ?     ?     ?     ?  
102  1  6  H   .  HOH  A  112  .  ?        ?     ?     ?     ?  
103  1  6  H   .  HOH  A  113  .  ?        ?     ?     ?     ?  
104  1  6  H   .  HOH  A  114  .  ?        ?     ?     ?     ?  
105  1  6  H   .  HOH  A  115  .  ?        ?     ?     ?     ?  
106  1  6  H   .  HOH  A  116  .  ?        ?     ?     ?     ?  
#
loop_
_pdbx_vrpt_model_instance_geometry.ordinal
_pdbx_vrpt_model_instance_geometry.instance_id
_pdbx_vrpt_model_instance_geometry.rotamer_class
_pdbx_vrpt_model_instance_geometry.phi
_pdbx_vrpt_model_instance_geometry.psi
_pdbx_vrpt_model_instance_geometry.ramachandran_class
_pdbx_vrpt_model_instance_geometry.num_H_reduce
_pdbx_vrpt_model_instance_geometry.OWAB
_pdbx_vrpt_model_instance_geometry.num_bonds_RMSZ
_pdbx_vrpt_model_instance_geometry.bonds_RMSZ
_pdbx_vrpt_model_instance_geometry.num_angles_RMSZ
_pdbx_vrpt_model_instance_geometry.angles_RMSZ
_pdbx_vrpt_model_instance_geometry.program_for_bond_angle_geometry
_pdbx_vrpt_model_instance_geometry.average_occupancy
  1    1  t70           ?      ?  ?           3  44.280     8  0.83    11  0.76  molprobity  1.000  
  2    2  m-20      -69.7  -40.0  Favored     4  37.420     8  0.47    11  0.98  molprobity  1.000  
  3    3  m-20      -52.4  -34.2  Favored     4  38.170     8  0.36    11  0.65  molprobity  1.000  
  4    4  m-20      -72.3  -30.4  Favored     4  39.840     8  0.52    11  0.84  molprobity  1.000  
  5    5  mttp      -63.1  -47.9  Favored    13  34.890     9  0.81    11  0.94  molprobity  1.000  
  6    6  OUTLIER   -59.1  -49.5  Favored    13  29.740     9  0.56    11  0.44  molprobity  1.000  
  7    7  m         -57.9  -48.5  Favored     7  29.670     7  0.60    10  0.50  molprobity  1.000  
  8    8  m-20      -65.0  -34.5  Favored     6  34.070     8  0.74    11  0.46  molprobity  1.000  
  9    9  m95       -62.8  -50.8  Favored    10  28.630    16  0.51    23  0.36  molprobity  1.000  
 10   10  mt        -57.1  -38.2  Favored    11  24.700     8  0.70    11  0.79  molprobity  1.000  
 11   11  OUTLIER   -61.3  -48.9  Favored    13  36.880     9  1.98    11  1.49  molprobity  1.000  
 12   12  ttt85     -63.6  -51.5  Favored    13  36.180    11  0.63    14  0.69  molprobity  1.000  
 13   13  mt        -50.4  -44.3  Favored    11  25.240     8  0.58    11  0.65  molprobity  1.000  
 14   14  t80       -67.4  -34.6  Favored     9  26.140    13  0.85    18  0.59  molprobity  1.000  
 15   15  ttp-105   -82.2  -39.7  Favored    13  37.920    11  1.07    14  1.22  molprobity  1.000  
 16   16  m         -87.2   -2.6  Favored     9  31.470     7  0.46    10  0.61  molprobity  1.000  
 17   17  mtp85    -129.4   91.0  Favored    13  38.670    11  0.66    15  0.59  molprobity  1.000  
 18   18  Cg_endo   -68.3  174.9  Favored     7  31.270     8  0.23    11  0.57  molprobity  1.000  
 19   19  t         -32.6  128.7  Allowed     4  30.350     6  0.69     8  1.09  molprobity  1.000  
 20   20  m         -66.2  -19.6  Favored     9  31.250     7  0.55    10  0.95  molprobity  1.000  
 21   21  tptt      -95.3  -54.2  Favored    13  29.540     9  0.38    11  0.43  molprobity  1.000  
 22   22  p         -90.1  -17.1  Favored     4  34.990     6  0.43     8  0.48  molprobity  1.000  
 23   23  mmtt       72.6  -11.0  Allowed    13  39.630     9  0.71    11  1.38  molprobity  1.000  
 24   24  t        -107.9  -57.1  Favored     9  36.650     7  0.53    10  0.97  molprobity  1.000  
 25   25  ?         -55.9  148.7  Favored     5  31.360     5  0.77     8  0.61  molprobity  1.000  
 26   26  Cg_endo   -75.6  162.4  Favored     7  28.930     8  0.58    11  0.45  molprobity  1.000  
 27   27  mtt180    -75.2  152.9  Favored    13  27.470    11  0.70    14  0.77  molprobity  1.000  
 28   28  t30       -65.8  160.2  Favored     6  26.850     8  0.48    11  0.31  molprobity  1.000  
 29   29  p-90     -163.8  160.2  Favored    10  26.890    16  0.53    23  0.48  molprobity  1.000  
 30   30  pttt     -149.3  162.3  Favored    13  35.790     9  0.56    11  0.72  molprobity  1.000  
 31   31  t         -92.3  117.4  Favored     9  39.630     7  0.81    10  0.91  molprobity  1.000  
 32   32  OUTLIER  -115.0   80.7  Allowed    13  47.510     9  0.87    11  1.30  molprobity  1.000  
 33   33  OUTLIER    71.8  -88.6  OUTLIER     6  50.560     8  0.64    11  1.31  molprobity  1.000  
 34   34  mttt     -107.0   -1.8  Favored    13  48.570     9  1.09    11  0.93  molprobity  1.000  
 35   35  m80      -115.0  153.8  Favored     7  36.320    11  0.32    15  0.59  molprobity  1.000  
 36   36  tp        -99.4  120.2  Favored    11  28.340     8  0.64    11  0.93  molprobity  1.000  
 37   37  ttm180    -93.2  112.6  Favored    13  27.520    11  0.49    14  0.41  molprobity  1.000  
 38   38  mt        -97.8  108.1  Favored    11  26.190     8  0.62    11  0.70  molprobity  1.000  
 39   39  m-85      -67.7  154.0  Favored     9  26.160    13  0.69    18  0.59  molprobity  1.000  
 40   40  m-20      -68.3  -25.3  Favored     6  27.240     8  0.48    11  0.48  molprobity  1.000  
 41   41  mtm      -124.3  160.3  Favored     9  25.840     8  0.58    10  0.75  molprobity  1.000  
 42   42  p         -70.9  174.9  Favored     4  27.770     6  0.34     8  0.86  molprobity  1.000  
 43   43  tptm      -71.8  -37.0  Favored    13  31.290     9  0.62    11  0.45  molprobity  1.000  
 44   44  m         -59.4  -46.1  Favored     7  28.840     7  0.55    10  0.83  molprobity  1.000  
 45   45  m         -75.6  -31.0  Favored     4  29.050     6  0.59     8  0.72  molprobity  1.000  
 46   46  t80       -63.4  -49.6  Favored     9  29.030    12  0.74    16  0.33  molprobity  1.000  
 47   47  m-20      -59.7  -43.8  Favored     6  31.140     8  0.59    11  0.56  molprobity  1.000  
 48   48  t30       -58.6  -41.1  Favored     6  28.890     8  0.39    11  0.45  molprobity  1.000  
 49   49  p         -60.0  -32.0  Favored     5  30.830     6  0.55     8  0.40  molprobity  1.000  
 50   50  mm        -67.0  -55.4  Favored    11  33.330     8  0.51    11  1.12  molprobity  1.000  
 51   51  m-20      -47.2  -45.0  Favored     4  33.440     8  0.42    11  0.96  molprobity  1.000  
 52   52  pt        -87.9   -6.5  Favored    11  32.790     8  0.47    11  0.63  molprobity  1.000  
 53   53  ?          80.1   32.1  Favored     3  31.540     4  0.58     5  0.50  molprobity  1.000  
 54   54  t0       -117.0  118.7  Favored     4  31.240     8  0.76    11  0.97  molprobity  1.000  
 55   55  p-10     -109.3   13.3  Favored     4  35.130     8  0.71    11  0.57  molprobity  1.000  
 56   56  m         -54.9  -38.5  Favored     7  30.740     7  0.54    10  0.99  molprobity  1.000  
 57   57  m-85      -98.2    1.2  Favored     9  34.040    13  0.70    18  0.80  molprobity  1.000  
 58   58  m170      -59.9  135.7  Favored     7  28.270    11  0.46    15  0.44  molprobity  1.000  
 59   59  ?         148.9  179.9  Favored     3  28.710     4  0.33     5  0.43  molprobity  1.000  
 60   60  p-80     -162.1  169.9  Favored     7  28.530    11  0.36    15  0.45  molprobity  1.000  
 61   61  t        -134.5  126.9  Favored     9  25.610     7  0.48    10  0.66  molprobity  1.000  
 62   62  m-20      -95.7  141.1  Favored     4  25.160     8  0.33    11  0.88  molprobity  1.000  
 63   63  m95      -130.6  124.3  Favored    10  22.820    16  1.07    23  0.44  molprobity  1.000  
 64   64  tp        -63.3  130.4  Favored    11  28.960     8  0.34    11  0.70  molprobity  1.000  
 65   65  mtm       -84.3   -7.3  Favored     9  34.020     8  0.32    10  0.74  molprobity  1.000  
 66   66  m-85     -113.1  168.7  Favored     9  45.090    13  0.41    18  0.37  molprobity  1.000  
 67   67  ?         -83.9  -31.6  Favored     5  35.160     5  0.16     7  0.59  molprobity  1.000  
 68   68  t0       -107.7  130.2  Favored     4  38.620     8  0.24    11  0.53  molprobity  1.000  
 69   69  p             ?      ?  ?           5  37.820     5  0.83     5  1.19  molprobity  1.000  
 70   70  ?             ?      ?  ?           ?  37.780     ?     ?     ?     ?  ?           1.000  
 71   71  ?             ?      ?  ?          12  44.010    24  0.96    29  1.47  mogul       1.000  
 72   72  ?             ?      ?  ?          10  33.540     6  0.56     5  0.41  mogul       1.000  
 73   73  ?             ?      ?  ?          10  49.650     6  0.72     5  0.42  mogul       1.000  
 74   74  ?             ?      ?  ?          10  50.710     6  0.52     5  0.27  mogul       1.000  
 75   75  ?             ?      ?  ?           ?  30.410     ?     ?     ?     ?  ?           0.500  
 76   76  ?             ?      ?  ?           ?  22.740     ?     ?     ?     ?  ?           1.000  
 77   77  ?             ?      ?  ?           ?  40.920     ?     ?     ?     ?  ?           1.000  
 78   78  ?             ?      ?  ?           ?  21.230     ?     ?     ?     ?  ?           0.500  
 79   79  ?             ?      ?  ?           ?  28.770     ?     ?     ?     ?  ?           1.000  
 80   80  ?             ?      ?  ?           ?  39.930     ?     ?     ?     ?  ?           1.000  
 81   81  ?             ?      ?  ?           ?  48.800     ?     ?     ?     ?  ?           1.000  
 82   82  ?             ?      ?  ?           ?  29.360     ?     ?     ?     ?  ?           1.000  
 83   83  ?             ?      ?  ?           ?  33.530     ?     ?     ?     ?  ?           1.000  
 84   84  ?             ?      ?  ?           ?  41.210     ?     ?     ?     ?  ?           1.000  
 85   85  ?             ?      ?  ?           ?  42.210     ?     ?     ?     ?  ?           1.000  
 86   86  ?             ?      ?  ?           ?  34.860     ?     ?     ?     ?  ?           1.000  
 87   87  ?             ?      ?  ?           ?  37.000     ?     ?     ?     ?  ?           1.000  
 88   88  ?             ?      ?  ?           ?  48.310     ?     ?     ?     ?  ?           1.000  
 89   89  ?             ?      ?  ?           ?  35.390     ?     ?     ?     ?  ?           1.000  
 90   90  ?             ?      ?  ?           ?  46.270     ?     ?     ?     ?  ?           1.000  
 91   91  ?             ?      ?  ?           ?  29.760     ?     ?     ?     ?  ?           1.000  
 92   92  ?             ?      ?  ?           ?  23.870     ?     ?     ?     ?  ?           1.000  
 93   93  ?             ?      ?  ?           ?  30.980     ?     ?     ?     ?  ?           1.000  
 94   94  ?             ?      ?  ?           ?  23.930     ?     ?     ?     ?  ?           1.000  
 95   95  ?             ?      ?  ?           ?  41.260     ?     ?     ?     ?  ?           1.000  
 96   96  ?             ?      ?  ?           ?  20.220     ?     ?     ?     ?  ?           1.000  
 97   97  ?             ?      ?  ?           ?  66.140     ?     ?     ?     ?  ?           1.000  
 98   98  ?             ?      ?  ?           ?  30.450     ?     ?     ?     ?  ?           1.000  
 99   99  ?             ?      ?  ?           ?  34.630     ?     ?     ?     ?  ?           1.000  
100  100  ?             ?      ?  ?           ?  38.790     ?     ?     ?     ?  ?           1.000  
101  101  ?             ?      ?  ?           ?  29.370     ?     ?     ?     ?  ?           1.000  
102  102  ?             ?      ?  ?           ?  36.100     ?     ?     ?     ?  ?           1.000  
103  103  ?             ?      ?  ?           ?  21.660     ?     ?     ?     ?  ?           1.000  
104  104  ?             ?      ?  ?           ?  23.550     ?     ?     ?     ?  ?           1.000  
105  105  ?             ?      ?  ?           ?  35.950     ?     ?     ?     ?  ?           1.000  
106  106  ?             ?      ?  ?           ?  45.950     ?     ?     ?     ?  ?           1.000  
#
loop_
_pdbx_vrpt_instance_clashes.ordinal
_pdbx_vrpt_instance_clashes.instance_id
_pdbx_vrpt_instance_clashes.label_atom_id
_pdbx_vrpt_instance_clashes.cid
_pdbx_vrpt_instance_clashes.clashmag
_pdbx_vrpt_instance_clashes.dist
 1  17  NH1  1  0.58  2.19  
 2  22  HB3  2  0.43  2.58  
 3  22  C    3  0.42  2.39  
 4  23  HG2  3  0.42  2.39  
 5  32  O    4  0.72  1.89  
 6  32  O    5  0.42  2.62  
 7  32  HG3  4  0.72  1.89  
 8  32  CG   5  0.42  2.62  
 9  33  OD1  6  0.56  2.32  
10  33  CG   7  0.54  2.61  
11  33  CG   8  0.53  2.12  
12  34  N    6  0.56  2.32  
13  34  N    7  0.54  2.61  
14  34  H    8  0.53  2.12  
15  39  HB3  9  0.47  2.50  
16  45  SG   2  0.43  2.58  
17  71  C6   9  0.47  2.50  
18  73  H31  1  0.58  2.19  
#
_pdbx_vrpt_instance_mogul_bond_outliers.ordinal      1
_pdbx_vrpt_instance_mogul_bond_outliers.instance_id  71
_pdbx_vrpt_instance_mogul_bond_outliers.atom_1       C5
_pdbx_vrpt_instance_mogul_bond_outliers.atom_2       C4
_pdbx_vrpt_instance_mogul_bond_outliers.obsval       1.47
_pdbx_vrpt_instance_mogul_bond_outliers.mean         1.40
_pdbx_vrpt_instance_mogul_bond_outliers.numobs       24
_pdbx_vrpt_instance_mogul_bond_outliers.stdev        0.03
_pdbx_vrpt_instance_mogul_bond_outliers.Zscore       2.44
_pdbx_vrpt_instance_mogul_bond_outliers.mindiff      0.00
#
loop_
_pdbx_vrpt_instance_mogul_angle_outliers.ordinal
_pdbx_vrpt_instance_mogul_angle_outliers.instance_id
_pdbx_vrpt_instance_mogul_angle_outliers.atom_1
_pdbx_vrpt_instance_mogul_angle_outliers.atom_2
_pdbx_vrpt_instance_mogul_angle_outliers.atom_3
_pdbx_vrpt_instance_mogul_angle_outliers.obsval
_pdbx_vrpt_instance_mogul_angle_outliers.mean
_pdbx_vrpt_instance_mogul_angle_outliers.numobs
_pdbx_vrpt_instance_mogul_angle_outliers.stdev
_pdbx_vrpt_instance_mogul_angle_outliers.Zscore
_pdbx_vrpt_instance_mogul_angle_outliers.mindiff
1  71  PA     O3A    PB     122.78  132.83    29  3.43  -2.93  4.74  
2  71  "O3'"  "C3'"  "C2'"  104.66  111.82  2473  3.23  -2.21  0.03  
3  71  "O4'"  "C1'"  "C2'"  103.69  106.93    21  1.46  -2.22  0.35  
4  71  C4     C5     N7     106.96  109.40    21  1.04  -2.34  0.55  
5  71  N3     C2     N1     123.96  128.68   136  1.56  -3.02  1.21  
#
loop_
_pdbx_vrpt_instance_mogul_torsion_outliers.ordinal
_pdbx_vrpt_instance_mogul_torsion_outliers.instance_id
_pdbx_vrpt_instance_mogul_torsion_outliers.atom_1
_pdbx_vrpt_instance_mogul_torsion_outliers.atom_2
_pdbx_vrpt_instance_mogul_torsion_outliers.atom_3
_pdbx_vrpt_instance_mogul_torsion_outliers.atom_4
_pdbx_vrpt_instance_mogul_torsion_outliers.obsval
_pdbx_vrpt_instance_mogul_torsion_outliers.mean
_pdbx_vrpt_instance_mogul_torsion_outliers.numobs
_pdbx_vrpt_instance_mogul_torsion_outliers.stdev
_pdbx_vrpt_instance_mogul_torsion_outliers.mindiff
_pdbx_vrpt_instance_mogul_torsion_outliers.local_density
 1  71  "C5'"  "O5'"  PA     O1A    -153.01  70.79     43  42.77   4.67  4.65  
 2  71  "C5'"  "O5'"  PA     O2A     -19.52  79.20     43  53.48  11.30  0.00  
 3  71  "C5'"  "O5'"  PA     O3A      94.44  33.11     46  17.73   8.98  4.35  
 4  71  "O4'"  "C4'"  "C5'"  "O5'"  -110.03  45.30    451   9.02   2.41  0.44  
 5  71  "C3'"  "C4'"  "C5'"  "O5'"     5.06  64.55    451  41.06   2.26  0.44  
 6  72  O1     C1     C2     O2      145.63  73.45    642  20.33   1.10  1.25  
 7  72  O2     C3     C4     O4     -128.71  60.15    642  12.86   4.70  0.31  
 8  73  O1     C1     C2     O2      155.08  81.05    642  24.89   1.99  1.25  
 9  73  C1     C2     O2     C3     -126.80  42.65  10000  10.72   0.06  2.14  
10  73  O2     C3     C4     O4     -149.22  76.34    642  22.01   0.55  1.25  
11  74  C1     C2     O2     C3      145.12  31.15  10000  16.33   0.00  4.45  
#
loop_
_pdbx_vrpt_model_instance_density.ordinal
_pdbx_vrpt_model_instance_density.instance_id
_pdbx_vrpt_model_instance_density.natoms_eds
_pdbx_vrpt_model_instance_density.RSRCC
_pdbx_vrpt_model_instance_density.RSR
_pdbx_vrpt_model_instance_density.RSRZ
  1    1   8  0.935  0.139  -0.334  
  2    2   8  0.965  0.119  -0.615  
  3    3   8  0.968  0.169   0.089  
  4    4   8  0.947  0.178   0.215  
  5    5   9  0.975  0.153  -0.564  
  6    6   9  0.985  0.133  -0.812  
  7    7   7  0.981  0.116  -0.584  
  8    8   8  0.950  0.125  -0.514  
  9    9  14  0.988  0.141  -0.139  
 10   10   8  0.981  0.136  -0.520  
 11   11   9  0.902  0.249   0.626  
 12   12  11  0.968  0.170  -0.178  
 13   13   8  0.968  0.144  -0.366  
 14   14  12  0.976  0.119  -0.594  
 15   15  11  0.894  0.209   0.340  
 16   16   7  0.991  0.111  -0.819  
 17   17  11  0.972  0.157  -0.350  
 18   18   7  0.979  0.105  -0.672  
 19   19   6  0.983  0.093  -0.778  
 20   20   7  0.975  0.128  -0.534  
 21   21   9  0.987  0.134  -0.799  
 22   22   6  0.984  0.103  -0.580  
 23   23   9  0.969  0.144  -0.675  
 24   24   7  0.971  0.186   0.437  
 25   25   5  0.987  0.147  -0.028  
 26   26   7  0.988  0.127  -0.328  
 27   27  11  0.986  0.136  -0.629  
 28   28   8  0.989  0.111  -0.720  
 29   29  14  0.987  0.131  -0.326  
 30   30   9  0.980  0.203   0.056  
 31   31   7  0.981  0.148  -0.199  
 32   32   9  0.934  0.274   0.936  
 33   33   8  0.898  0.262   1.498  
 34   34   9  0.918  0.294   1.183  
 35   35  10  0.969  0.170   0.209  
 36   36   8  0.981  0.159  -0.145  
 37   37  11  0.985  0.144  -0.523  
 38   38   8  0.975  0.124  -0.701  
 39   39  12  0.984  0.147  -0.102  
 40   40   8  0.992  0.141  -0.279  
 41   41   8  0.990  0.132  -0.353  
 42   42   6  0.984  0.128  -0.085  
 43   43   9  0.973  0.142  -0.700  
 44   44   7  0.979  0.147  -0.081  
 45   45   6  0.987  0.142   0.192  
 46   46  11  0.978  0.141  -0.288  
 47   47   8  0.975  0.157  -0.044  
 48   48   8  0.989  0.127  -0.485  
 49   49   6  0.979  0.126  -0.380  
 50   50   8  0.979  0.114  -0.868  
 51   51   8  0.986  0.119  -0.615  
 52   52   8  0.990  0.144  -0.366  
 53   53   4  0.974  0.125  -0.299  
 54   54   8  0.981  0.127  -0.503  
 55   55   8  0.951  0.163   0.004  
 56   56   7  0.990  0.135  -0.276  
 57   57  12  0.983  0.132  -0.366  
 58   58  10  0.988  0.117  -0.588  
 59   59   4  0.990  0.137  -0.122  
 60   60  10  0.985  0.124  -0.483  
 61   61   7  0.973  0.122  -0.635  
 62   62   8  0.981  0.135  -0.390  
 63   63  14  0.984  0.135  -0.251  
 64   64   8  0.986  0.180   0.197  
 65   65   8  0.989  0.136  -0.288  
 66   66  12  0.952  0.224   1.251  
 67   67   5  0.979  0.158   0.151  
 68   68   8  0.962  0.155  -0.108  
 69   69   6  0.958  0.129  -0.334  
 70   70   1  0.986  0.030       ?  
 71   71  27  0.945  0.133       ?  
 72   72   7  0.969  0.167       ?  
 73   73   7  0.826  0.168       ?  
 74   74   7  0.918  0.140       ?  
 75   75   1  0.997  0.169       ?  
 76   76   1  0.965  0.148       ?  
 77   77   1  0.895  0.176       ?  
 78   78   1  0.920  0.256       ?  
 79   79   1  0.840  0.254       ?  
 80   80   1  0.847  0.365       ?  
 81   81   1  0.713  0.331       ?  
 82   82   1  0.799  0.171       ?  
 83   83   1  0.933  0.131       ?  
 84   84   1  0.865  0.351       ?  
 85   85   1  0.819  0.434       ?  
 86   86   1  0.852  0.377       ?  
 87   87   1  0.677  0.541       ?  
 88   88   1  0.841  0.430       ?  
 89   89   1  0.921  0.214       ?  
 90   90   1  0.761  0.212       ?  
 91   91   1  0.954  0.287       ?  
 92   92   1  0.983  0.141       ?  
 93   93   1  0.992  0.160       ?  
 94   94   1  0.977  0.227       ?  
 95   95   1  0.908  0.102       ?  
 96   96   1  0.910  0.212       ?  
 97   97   1  0.437  0.561       ?  
 98   98   1  0.954  0.098       ?  
 99   99   1  0.792  0.276       ?  
100  100   1  0.627  0.200       ?  
101  101   1  0.955  0.191       ?  
102  102   1  0.855  0.245       ?  
103  103   1  0.922  0.195       ?  
104  104   1  0.917  0.127       ?  
105  105   1  0.956  0.230       ?  
106  106   1  0.616  0.226       ?  
#
loop_
_pdbx_vrpt_software.ordinal
_pdbx_vrpt_software.name
_pdbx_vrpt_software.version
_pdbx_vrpt_software.success_y_or_n
1  molprobity   4.02b-467                                                             Y  
2  mogul        "1.8.5 (274361), CSD as541be (2020)"                                  Y  
3  eds          2.35                                                                  Y  
4  dcc          '"2.27  (2023-04-10)"'                                                Y  
5  xtriage      1.13                                                                  Y  
6  percentiles  "20191225.v01 (using entries in the PDB archive December 25th 2019)"  Y  
##
