data_3GNA

loop_
_pdbx_vrpt_database.id
_pdbx_vrpt_database.code
PDB  3GNA    
NDB  PD1261  
#
_pdbx_vrpt_exptl.ordinal  1
_pdbx_vrpt_exptl.method   x-ray
#
_pdbx_vrpt_summary.entry_id                    3GNA
_pdbx_vrpt_summary.PDB_deposition_date         2009-03-16
_pdbx_vrpt_summary.PDB_revision_number         3
_pdbx_vrpt_summary.PDB_revision_date           2024-02-21
_pdbx_vrpt_summary.report_creation_date        2024-02-12:09:30
_pdbx_vrpt_summary.attempted_validation_steps  molprobity,validation-pack,xtriage,eds,percentiles,writexml,writecif,writepdf
_pdbx_vrpt_summary.ligands_for_buster_report   N
#
loop_
_pdbx_vrpt_entity.id
_pdbx_vrpt_entity.type
_pdbx_vrpt_entity.description
1  polymer  "V(D)J recombination-activating protein 1"  
2  polymer  "5'-D(*AP*CP*TP*TP*AP*AP*CP*AP*AP*AP*AP*AP*CP*C)-3'"  
3  polymer  "5'-D(*TP*GP*GP*TP*TP*TP*TP*TP*GP*TP*TP*AP*AP*G)-3'"  
4  water    water  
#
loop_
_pdbx_vrpt_asym.label_asym_id
_pdbx_vrpt_asym.entity_id
A  1  
B  2  
C  3  
D  4  
#
loop_
_pdbx_vrpt_percentile_list.id
_pdbx_vrpt_percentile_list.range
_pdbx_vrpt_percentile_list.exp_method
1  all  x-ray  
2  2.4  x-ray  
#
loop_
_pdbx_vrpt_percentile_type.id
_pdbx_vrpt_percentile_type.type
1  all_atom_clashscore           
2  Ramachandran_outlier_percent  
3  rotamer_outliers_percent      
4  RSRZ_outliers_percent         
#
loop_
_pdbx_vrpt_percentile_conditions.id
_pdbx_vrpt_percentile_conditions.percentile_list_id
_pdbx_vrpt_percentile_conditions.type_id
_pdbx_vrpt_percentile_conditions.rank
_pdbx_vrpt_percentile_conditions.number_entries_total
_pdbx_vrpt_percentile_conditions.res_high
_pdbx_vrpt_percentile_conditions.res_low
1  1  1   12.76  141614     ?     ?  
2  2  1   17.89    4398  2.40  2.40  
3  1  2  100.00  138981     ?     ?  
4  2  2  100.00    4318  2.40  2.40  
5  1  3   58.54  138945     ?     ?  
6  2  3   76.48    4319  2.40  2.40  
7  1  4    8.08  127900     ?     ?  
8  2  4    7.35    3811  2.40  2.40  
#
loop_
_pdbx_vrpt_percentile_entity_view.ordinal
_pdbx_vrpt_percentile_entity_view.conditions_id
_pdbx_vrpt_percentile_entity_view.type_id
_pdbx_vrpt_percentile_entity_view.label_asym_id
_pdbx_vrpt_percentile_entity_view.PDB_model_num
_pdbx_vrpt_percentile_entity_view.entity_id
_pdbx_vrpt_percentile_entity_view.auth_asym_id
_pdbx_vrpt_percentile_entity_view.rank
 1  3  2  A  1  1  A  100.00  
 2  4  2  A  1  1  A  100.00  
 3  5  3  A  1  1  A   60.43  
 4  6  3  A  1  1  A   77.70  
 5  7  4  A  1  1  A    2.88  
 6  8  4  A  1  1  A    2.60  
 7  7  4  B  1  2  D  100.00  
 8  8  4  B  1  2  D  100.00  
 9  7  4  C  1  3  E  100.00  
10  8  4  C  1  3  E  100.00  
#
loop_
_pdbx_vrpt_summary_entity_geometry.ordinal
_pdbx_vrpt_summary_entity_geometry.PDB_model_num
_pdbx_vrpt_summary_entity_geometry.entity_id
_pdbx_vrpt_summary_entity_geometry.label_asym_id
_pdbx_vrpt_summary_entity_geometry.auth_asym_id
_pdbx_vrpt_summary_entity_geometry.angles_RMSZ
_pdbx_vrpt_summary_entity_geometry.bonds_RMSZ
_pdbx_vrpt_summary_entity_geometry.num_bonds_RMSZ
_pdbx_vrpt_summary_entity_geometry.num_angles_RMSZ
1  1  1  A  A  0.58  0.37  564  751  
2  1  2  B  D  1.45  0.70  304  465  
3  1  3  C  E  1.37  0.66  310  478  
#
_pdbx_vrpt_summary_geometry.ordinal                        1
_pdbx_vrpt_summary_geometry.percent_ramachandran_outliers  0.00
_pdbx_vrpt_summary_geometry.percent_rotamer_outliers       1.75
_pdbx_vrpt_summary_geometry.clashscore                     16.52
_pdbx_vrpt_summary_geometry.num_H_reduce                   893
_pdbx_vrpt_summary_geometry.num_bonds_RMSZ                 1178
_pdbx_vrpt_summary_geometry.bonds_RMSZ                     0.55
_pdbx_vrpt_summary_geometry.num_angles_RMSZ                1694
_pdbx_vrpt_summary_geometry.angles_RMSZ                    1.12
#
_pdbx_vrpt_summary_diffraction.exp_method                x-ray
_pdbx_vrpt_summary_diffraction.ordinal                   1
_pdbx_vrpt_summary_diffraction.Babinet_b                 78.771
_pdbx_vrpt_summary_diffraction.bulk_solvent_b            79.032
_pdbx_vrpt_summary_diffraction.Wilson_B_estimate         93.950
_pdbx_vrpt_summary_diffraction.I_over_sigma              2.57(2.41A)
_pdbx_vrpt_summary_diffraction.num_miller_indices        6804
_pdbx_vrpt_summary_diffraction.Babinet_k                 0.292
_pdbx_vrpt_summary_diffraction.bulk_solvent_k            0.286
_pdbx_vrpt_summary_diffraction.Padilla_Yeates_L_mean     0.452
_pdbx_vrpt_summary_diffraction.Padilla_Yeates_L2_mean    0.279
_pdbx_vrpt_summary_diffraction.Fo_Fc_correlation         0.950
_pdbx_vrpt_summary_diffraction.DCC_R                     0.24
_pdbx_vrpt_summary_diffraction.EDS_R                     0.25
_pdbx_vrpt_summary_diffraction.EDS_res_high              2.40
_pdbx_vrpt_summary_diffraction.EDS_res_low               19.98
_pdbx_vrpt_summary_diffraction.Wilson_B_aniso            "[95.561,95.561,89.836,0.000,0.000,0.000]"
_pdbx_vrpt_summary_diffraction.data_anisotropy           0.061
_pdbx_vrpt_summary_diffraction.trans_NCS_details         "The largest off-origin peak in the Patterson function is 8.44% of the height of the origin peak. No significant pseudotranslation is detected."
_pdbx_vrpt_summary_diffraction.B_factor_type             PARTIAL
_pdbx_vrpt_summary_diffraction.acentric_outliers         0
_pdbx_vrpt_summary_diffraction.centric_outliers          0
_pdbx_vrpt_summary_diffraction.data_completeness         99.66
_pdbx_vrpt_summary_diffraction.number_reflns_R_free      0
_pdbx_vrpt_summary_diffraction.percent_free_reflections  0.00
_pdbx_vrpt_summary_diffraction.percent_RSRZ_outliers     9.38
_pdbx_vrpt_summary_diffraction.PDB_resolution_high       2.40
_pdbx_vrpt_summary_diffraction.PDB_resolution_low        20.00
_pdbx_vrpt_summary_diffraction.PDB_R                     0.24
_pdbx_vrpt_summary_diffraction.PDB_Rfree                 0.27
#
loop_
_pdbx_vrpt_model_instance.id
_pdbx_vrpt_model_instance.PDB_model_num
_pdbx_vrpt_model_instance.entity_id
_pdbx_vrpt_model_instance.label_asym_id
_pdbx_vrpt_model_instance.label_seq_id
_pdbx_vrpt_model_instance.label_comp_id
_pdbx_vrpt_model_instance.auth_asym_id
_pdbx_vrpt_model_instance.auth_seq_id
_pdbx_vrpt_model_instance.label_alt_id
_pdbx_vrpt_model_instance.PDB_ins_code
_pdbx_vrpt_model_instance.count_angle_outliers
_pdbx_vrpt_model_instance.count_clashes
  1  1  1  A  21  GLY  A  389  .  ?        ?     ?  
  2  1  1  A  22  GLY  A  390  .  ?        ?     ?  
  3  1  1  A  23  ARG  A  391  .  ?        ?     ?  
  4  1  1  A  24  PRO  A  392  .  ?        ?     ?  
  5  1  1  A  25  ARG  A  393  .  ?        ?     ?  
  6  1  1  A  26  GLN  A  394  .  ?        ?     ?  
  7  1  1  A  27  HIS  A  395  .  ?        ?     ?  
  8  1  1  A  28  LEU  A  396  .  ?        ?     ?  
  9  1  1  A  29  LEU  A  397  .  ?        ?     ?  
 10  1  1  A  30  SER  A  398  .  ?        ?     ?  
 11  1  1  A  31  LEU  A  399  .  ?        ?     ?  
 12  1  1  A  32  THR  A  400  .  ?        ?     ?  
 13  1  1  A  33  ARG  A  401  .  ?        ?     ?  
 14  1  1  A  34  ARG  A  402  .  ?        ?     ?  
 15  1  1  A  35  ALA  A  403  .  ?        ?     ?  
 16  1  1  A  36  GLN  A  404  .  ?        ?     ?  
 17  1  1  A  37  LYS  A  405  .  ?        ?     ?  
 18  1  1  A  38  HIS  A  406  .  ?        ?     ?  
 19  1  1  A  39  ARG  A  407  .  ?        ?     ?  
 20  1  1  A  40  LEU  A  408  .  ?        ?     ?  
 21  1  1  A  41  ARG  A  409  .  ?        ?     1  
 22  1  1  A  42  GLU  A  410  .  ?        ?     ?  
 23  1  1  A  43  LEU  A  411  .  ?        ?     1  
 24  1  1  A  44  LYS  A  412  .  ?        ?     ?  
 25  1  1  A  45  ILE  A  413  .  ?        ?     ?  
 26  1  1  A  46  GLN  A  414  .  ?        ?     ?  
 27  1  1  A  47  VAL  A  415  .  ?        ?     1  
 28  1  1  A  48  LYS  A  416  .  ?        ?     ?  
 29  1  1  A  49  GLU  A  417  .  ?        ?     ?  
 30  1  1  A  50  PHE  A  418  .  ?        ?     ?  
 31  1  1  A  51  ALA  A  419  .  ?        ?     ?  
 32  1  1  A  52  ASP  A  420  .  ?        ?     ?  
 33  1  1  A  53  LYS  A  421  .  ?        ?     ?  
 34  1  1  A  54  GLU  A  422  .  ?        ?     ?  
 35  1  1  A  55  GLU  A  423  .  ?        ?     ?  
 36  1  1  A  56  GLY  A  424  .  ?        ?     ?  
 37  1  1  A  57  GLY  A  425  .  ?        ?     ?  
 38  1  1  A  58  ASP  A  426  .  ?        ?     ?  
 39  1  1  A  59  VAL  A  427  .  ?        ?     ?  
 40  1  1  A  60  LYS  A  428  .  ?        ?     ?  
 41  1  1  A  61  ALA  A  429  .  ?        ?     ?  
 42  1  1  A  62  VAL  A  430  .  ?        ?     ?  
 43  1  1  A  63  CYS  A  431  A  ?        ?     ?  
 44  1  1  A  63  CYS  A  431  B  ?        ?     ?  
 45  1  1  A  64  LEU  A  432  .  ?        ?     ?  
 46  1  1  A  65  THR  A  433  .  ?        ?     ?  
 47  1  1  A  66  LEU  A  434  .  ?        ?     ?  
 48  1  1  A  67  PHE  A  435  .  ?        ?     ?  
 49  1  1  A  68  LEU  A  436  .  ?        ?     ?  
 50  1  1  A  69  LEU  A  437  .  ?        ?     ?  
 51  1  1  A  70  ALA  A  438  .  ?        ?     ?  
 52  1  1  A  71  LEU  A  439  .  ?        ?     ?  
 53  1  1  A  72  ARG  A  440  .  ?        ?     ?  
 54  1  1  A  73  ALA  A  441  .  ?        ?     ?  
 55  1  1  A  74  ARG  A  442  .  ?        ?     ?  
 56  1  1  A  75  ASN  A  443  .  ?        ?     ?  
 57  1  1  A  76  GLU  A  444  .  ?        ?     ?  
 58  1  1  A  77  HIS  A  445  .  ?        ?     ?  
 59  1  1  A  78  ARG  A  446  .  ?        ?     ?  
 60  1  1  A  79  GLN  A  447  .  ?        ?     ?  
 61  1  1  A  80  ALA  A  448  .  ?        ?     ?  
 62  1  1  A  81  ASP  A  449  .  ?        ?     ?  
 63  1  1  A  82  GLU  A  450  .  ?        ?     ?  
 64  1  1  A  83  LEU  A  451  .  ?        ?     ?  
 65  1  1  A  84  GLU  A  452  .  ?        ?     ?  
 66  1  1  A  85  ALA  A  453  .  ?        ?     ?  
 67  1  1  A  86  ILE  A  454  .  ?        ?     ?  
 68  1  1  A  87  MET  A  455  .  ?        ?     ?  
 69  1  1  A  88  GLN  A  456  .  ?        ?     ?  
 70  1  2  B   1  DA   D    1  A  ?        ?     5  
 71  1  2  B   2  DC   D    2  A  ?        ?     8  
 72  1  2  B   3  DT   D    3  A  ?        ?     4  
 73  1  2  B   4  DT   D    4  A  ?        ?     2  
 74  1  2  B   5  DA   D    5  A  ?        ?     2  
 75  1  2  B   6  DA   D    6  A  ?        ?     1  
 76  1  2  B   7  DC   D    7  A  ?        ?     5  
 77  1  2  B   8  DA   D    8  A  ?        2     5  
 78  1  2  B   9  DA   D    9  A  ?        ?     ?  
 79  1  2  B  10  DA   D   10  A  ?        ?     1  
 80  1  2  B  11  DA   D   11  A  ?        ?     1  
 81  1  2  B  12  DA   D   12  A  ?        ?     3  
 82  1  2  B  13  DC   D   13  A  ?        2     3  
 83  1  2  B  14  DC   D   14  A  ?        ?     ?  
 84  1  3  C   1  DT   E    1  B  ?        ?     2  
 85  1  3  C   2  DG   E    2  B  ?        ?     2  
 86  1  3  C   3  DG   E    3  B  ?        ?     ?  
 87  1  3  C   4  DT   E    4  B  ?        ?     ?  
 88  1  3  C   5  DT   E    5  B  ?        ?     ?  
 89  1  3  C   6  DT   E    6  B  ?        ?     ?  
 90  1  3  C   7  DT   E    7  B  ?        ?     2  
 91  1  3  C   8  DT   E    8  B  ?        ?     5  
 92  1  3  C   9  DG   E    9  B  ?        ?     4  
 93  1  3  C  10  DT   E   10  B  ?        ?     2  
 94  1  3  C  11  DT   E   11  B  ?        ?     1  
 95  1  3  C  12  DA   E   12  B  ?        ?     ?  
 96  1  3  C  13  DA   E   13  B  ?        2     2  
 97  1  3  C  14  DG   E   14  B  ?        ?     2  
 98  1  4  D   .  HOH  A    1  .  ?        ?     ?  
 99  1  4  D   .  HOH  A    3  .  ?        ?     ?  
100  1  4  D   .  HOH  A    4  .  ?        ?     1  
101  1  4  D   .  HOH  A    5  .  ?        ?     ?  
102  1  4  D   .  HOH  A    6  .  ?        ?     ?  
103  1  4  D   .  HOH  A    8  .  ?        ?     ?  
104  1  4  D   .  HOH  A    9  .  ?        ?     ?  
105  1  4  D   .  HOH  A   10  .  ?        ?     ?  
#
loop_
_pdbx_vrpt_model_instance_geometry.ordinal
_pdbx_vrpt_model_instance_geometry.instance_id
_pdbx_vrpt_model_instance_geometry.rotamer_class
_pdbx_vrpt_model_instance_geometry.phi
_pdbx_vrpt_model_instance_geometry.psi
_pdbx_vrpt_model_instance_geometry.ramachandran_class
_pdbx_vrpt_model_instance_geometry.flippable_sidechain
_pdbx_vrpt_model_instance_geometry.num_H_reduce
_pdbx_vrpt_model_instance_geometry.OWAB
_pdbx_vrpt_model_instance_geometry.num_bonds_RMSZ
_pdbx_vrpt_model_instance_geometry.bonds_RMSZ
_pdbx_vrpt_model_instance_geometry.num_angles_RMSZ
_pdbx_vrpt_model_instance_geometry.angles_RMSZ
_pdbx_vrpt_model_instance_geometry.program_for_bond_angle_geometry
_pdbx_vrpt_model_instance_geometry.average_occupancy
  1    1  ?             ?      ?  ?           ?     2  91.380     4  1.26     5  0.15  molprobity  1.000  
  2    2  ?         117.7  149.1  Favored     ?     3  90.120     4  0.26     5  0.51  molprobity  1.000  
  3    3  ttt180    -66.4  132.8  Favored     ?    13  91.520    11  0.31    15  0.68  molprobity  1.000  
  4    4  Cg_exo    -63.3  141.7  Favored     ?     7  91.070     8  0.35    11  0.26  molprobity  1.000  
  5    5  mtt180    -75.3  133.1  Favored     ?    13  90.970    11  0.40    14  0.55  molprobity  1.000  
  6    6  mt-30     -78.9  168.7  Favored     ?     8  92.190     9  0.30    12  0.72  molprobity  1.000  
  7    7  t60       -70.0  143.5  Favored     1     7  93.990    11  0.20    15  0.59  molprobity  1.000  
  8    8  tp        -50.7  -42.8  Favored     ?    11  92.290     8  0.28    11  0.59  molprobity  1.000  
  9    9  mt        -73.3  -13.7  Favored     ?    11  93.460     8  0.23    11  0.45  molprobity  1.000  
 10   10  p         -91.4  -17.4  Favored     ?     5  93.450     6  0.23     8  0.24  molprobity  1.000  
 11   11  mt        -73.0  160.6  Favored     ?    11  92.140     8  0.32    11  0.79  molprobity  1.000  
 12   12  p         -68.5  156.5  Favored     ?     7  90.920     7  0.35    10  0.74  molprobity  1.000  
 13   13  mtm-85    -56.4  -36.1  Favored     ?    13  94.250    11  0.33    14  0.94  molprobity  1.000  
 14   14  tpt85     -58.4  -51.6  Favored     ?    13  93.700    11  0.39    14  1.32  molprobity  1.000  
 15   15  ?         -71.8  -38.3  Favored     ?     5  90.810     5  0.16     7  0.26  molprobity  1.000  
 16   16  mt-30     -54.9  -45.3  Favored     ?     8  91.630     9  0.43    12  0.69  molprobity  1.000  
 17   17  tttt      -62.8  -37.9  Favored     ?    13  93.090     9  0.35    11  0.85  molprobity  1.000  
 18   18  t-80      -66.2  -37.7  Favored     ?     7  93.520    11  0.19    15  0.34  molprobity  1.000  
 19   19  mtp180    -75.9  -36.2  Favored     ?    13  91.360    11  0.68    14  1.09  molprobity  1.000  
 20   20  mt        -84.5   -6.6  Favored     ?    11  93.470     8  0.29    11  0.24  molprobity  1.000  
 21   21  ttt-85    -33.8  -47.4  Allowed     ?    13  97.070    11  0.54    14  0.92  molprobity  1.000  
 22   22  mm-40     -77.8  -37.5  Favored     ?     6  95.220     9  0.74    12  0.54  molprobity  1.000  
 23   23  tp        -69.3  -35.0  Favored     ?    11  92.710     8  0.29    11  0.25  molprobity  1.000  
 24   24  tttt      -58.0  -37.8  Favored     ?    13  93.240     9  0.46    11  0.35  molprobity  1.000  
 25   25  mt        -68.5  -46.8  Favored     ?    11  92.280     8  0.26    11  0.53  molprobity  1.000  
 26   26  mt-30     -59.9  -38.2  Favored     ?     8  91.690     9  0.32    12  0.35  molprobity  0.944  
 27   27  t         -67.7  -44.6  Favored     ?     9  91.440     7  0.17    10  0.51  molprobity  1.000  
 28   28  tptp      -55.9  -52.8  Favored     ?    13  93.190     9  0.35    11  0.42  molprobity  1.000  
 29   29  mt-10     -56.4  -38.8  Favored     ?     6  94.760     9  0.48    12  0.36  molprobity  1.000  
 30   30  t80       -69.8  -53.0  Favored     ?     9  93.650    12  0.58    16  0.30  molprobity  1.000  
 31   31  ?         -53.6  -40.1  Favored     ?     5  91.510     5  0.17     7  0.18  molprobity  1.000  
 32   32  m-20      -66.9  -48.9  Favored     ?     4  93.330     8  0.33    11  0.67  molprobity  1.000  
 33   33  mttt      -70.9  -34.0  Favored     ?    13  94.910     9  0.44    11  0.43  molprobity  1.000  
 34   34  mm-40    -119.0  -23.8  Favored     ?     6  94.060     9  0.46    12  0.92  molprobity  1.000  
 35   35  mm-40    -126.5   25.7  Favored     ?     6  94.820     9  0.37    12  0.49  molprobity  1.000  
 36   36  ?          57.5   41.2  Favored     ?     3  93.690     4  0.26     5  0.21  molprobity  1.000  
 37   37  ?          63.1   22.6  Favored     ?     3  92.640     4  0.37     5  0.70  molprobity  1.000  
 38   38  t0        -89.5   80.2  Favored     ?     4  91.190     8  0.29    11  0.60  molprobity  1.000  
 39   39  t         -64.6  -45.8  Favored     ?     9  87.680     7  0.27    10  0.30  molprobity  1.000  
 40   40  tttt      -54.0  -53.7  Favored     ?    13  91.280     9  0.43    11  0.39  molprobity  1.000  
 41   41  ?         -62.1  -40.2  Favored     ?     5  91.260     5  0.31     7  0.43  molprobity  1.000  
 42   42  t         -62.1  -55.1  Favored     ?     9  90.060     7  0.20    10  0.37  molprobity  1.000  
 43   43  m         -69.4  -30.7  Favored     ?     5  92.010     6  0.35     8  0.45  molprobity  1.000  
 44   44  m         -69.4  -30.7  Favored     ?     5  92.010     6  0.35     8  0.45  molprobity  1.000  
 45   45  tp        -61.6  -48.3  Favored     ?    11  91.650     8  0.27    11  0.39  molprobity  1.000  
 46   46  m         -69.3  -40.0  Favored     ?     7  90.950     7  0.40    10  0.40  molprobity  1.000  
 47   47  mt        -56.0  -49.0  Favored     ?    11  92.800     8  0.34    11  0.81  molprobity  1.000  
 48   48  t80       -64.0  -48.2  Favored     ?     9  91.220    12  0.35    16  0.23  molprobity  1.000  
 49   49  mt        -56.6  -51.0  Favored     ?    11  91.490     8  0.26    11  0.31  molprobity  1.000  
 50   50  mt        -65.6  -30.6  Favored     ?    11  92.420     8  0.29    11  0.29  molprobity  1.000  
 51   51  ?         -67.5  -38.6  Favored     ?     5  90.760     5  0.43     7  0.46  molprobity  1.000  
 52   52  mt        -65.8  -51.8  Favored     ?    11  90.660     8  0.29    11  0.48  molprobity  1.000  
 53   53  mtt-85    -68.1  -26.5  Favored     ?    13  91.510    11  0.35    14  0.72  molprobity  1.000  
 54   54  ?         -64.5  -28.5  Favored     ?     5  90.770     5  0.23     7  0.68  molprobity  1.000  
 55   55  mtt-85    -96.0    8.9  Favored     ?    13  95.450    11  0.33    14  0.91  molprobity  1.000  
 56   56  m120       61.6   30.3  Favored     1     6  92.090     8  0.34    11  0.62  molprobity  1.000  
 57   57  mt-10     -98.3   61.8  Allowed     ?     6  95.910     9  0.35    12  0.77  molprobity  1.000  
 58   58  m80       -66.1  -41.3  Favored     1     7  94.010    11  0.14    15  0.19  molprobity  1.000  
 59   59  mtt180    -57.7  -46.6  Favored     ?    13  93.650    11  0.29    14  0.37  molprobity  1.000  
 60   60  mt-30     -65.8  -42.0  Favored     ?     8  94.340     9  0.30    12  0.39  molprobity  1.000  
 61   61  ?         -63.2  -37.7  Favored     ?     5  93.490     5  0.09     7  0.27  molprobity  1.000  
 62   62  m-20      -65.7  -40.6  Favored     ?     4  93.560     8  0.20    11  0.37  molprobity  1.000  
 63   63  mt-10     -67.7  -39.0  Favored     ?     6  94.530     9  0.37    12  0.26  molprobity  1.000  
 64   64  tp        -66.5  -34.8  Favored     ?    11  92.300     8  0.30    11  0.38  molprobity  1.000  
 65   65  tt0       -73.3  -23.1  Favored     ?     6  95.590     9  0.25    12  0.30  molprobity  1.000  
 66   66  ?         -76.2  -40.1  Favored     ?     5  94.580     5  0.18     7  0.40  molprobity  1.000  
 67   67  mt        -63.9  -42.6  Favored     ?    11  94.410     8  0.36    11  0.81  molprobity  1.000  
 68   68  mmm       -93.3  115.2  Favored     ?     9  95.820     8  0.23    10  0.43  molprobity  1.000  
 69   69  OUTLIER       ?      ?  ?           ?     8  96.920     8  0.58     9  0.76  molprobity  1.000  
 70   70  ?             ?      ?  ?           ?     7  92.880     9  0.60    14  1.26  molprobity  0.500  
 71   71  ?             ?      ?  ?           ?    11  90.850    21  0.63    32  1.13  molprobity  0.500  
 72   72  ?             ?      ?  ?           ?    12  92.160    22  0.76    34  1.40  molprobity  0.500  
 73   73  ?             ?      ?  ?           ?    12  92.950    22  0.73    34  1.46  molprobity  0.500  
 74   74  ?             ?      ?  ?           ?    11  93.770    24  0.49    37  0.99  molprobity  0.500  
 75   75  ?             ?      ?  ?           ?    11  92.840    24  0.52    37  1.08  molprobity  0.500  
 76   76  ?             ?      ?  ?           ?    11  91.600    21  0.71    32  1.40  molprobity  0.500  
 77   77  ?             ?      ?  ?           ?    11  93.410    24  1.03    37  1.99  molprobity  0.500  
 78   78  ?             ?      ?  ?           ?    11  92.710    24  0.51    37  1.42  molprobity  0.500  
 79   79  ?             ?      ?  ?           ?    11  94.830    24  0.57    37  1.25  molprobity  0.500  
 80   80  ?             ?      ?  ?           ?    11  93.660    24  0.74    37  1.46  molprobity  0.500  
 81   81  ?             ?      ?  ?           ?    11  93.030    24  0.54    37  0.77  molprobity  0.500  
 82   82  ?             ?      ?  ?           ?    11  94.720    21  0.84    32  2.39  molprobity  0.500  
 83   83  ?             ?      ?  ?           ?    12  95.440    20  0.86    28  1.61  molprobity  0.500  
 84   84  ?             ?      ?  ?           ?     7  93.820     9  0.47    14  1.70  molprobity  0.500  
 85   85  ?             ?      ?  ?           ?    11  88.820    25  0.61    39  0.98  molprobity  0.500  
 86   86  ?             ?      ?  ?           ?    11  94.310    25  0.66    39  0.91  molprobity  0.500  
 87   87  ?             ?      ?  ?           ?    12  93.780    22  0.74    34  1.41  molprobity  0.500  
 88   88  ?             ?      ?  ?           ?    12  92.930    22  0.73    34  1.41  molprobity  0.500  
 89   89  ?             ?      ?  ?           ?    12  92.120    22  0.67    34  1.27  molprobity  0.500  
 90   90  ?             ?      ?  ?           ?    12  92.000    22  0.69    34  1.67  molprobity  0.500  
 91   91  ?             ?      ?  ?           ?    12  93.420    22  0.82    34  1.72  molprobity  0.500  
 92   92  ?             ?      ?  ?           ?    11  92.280    25  0.48    39  0.85  molprobity  0.500  
 93   93  ?             ?      ?  ?           ?    12  93.910    22  0.72    34  1.55  molprobity  0.500  
 94   94  ?             ?      ?  ?           ?    12  94.200    22  0.77    34  1.55  molprobity  0.500  
 95   95  ?             ?      ?  ?           ?    11  93.830    24  0.48    37  0.80  molprobity  0.500  
 96   96  ?             ?      ?  ?           ?    11  94.300    24  0.55    37  2.09  molprobity  0.500  
 97   97  ?             ?      ?  ?           ?    12  93.240    24  0.62    35  0.84  molprobity  0.500  
 98   98  ?             ?      ?  ?           ?     ?  72.220     ?     ?     ?     ?  ?           1.000  
 99   99  ?             ?      ?  ?           ?     ?  88.400     ?     ?     ?     ?  ?           1.000  
100  100  ?             ?      ?  ?           ?     ?  86.440     ?     ?     ?     ?  ?           1.000  
101  101  ?             ?      ?  ?           ?     ?  84.430     ?     ?     ?     ?  ?           1.000  
102  102  ?             ?      ?  ?           ?     ?  73.190     ?     ?     ?     ?  ?           0.500  
103  103  ?             ?      ?  ?           ?     ?  89.130     ?     ?     ?     ?  ?           1.000  
104  104  ?             ?      ?  ?           ?     ?  88.290     ?     ?     ?     ?  ?           1.000  
105  105  ?             ?      ?  ?           ?     ?  76.550     ?     ?     ?     ?  ?           1.000  
#
loop_
_pdbx_vrpt_instance_clashes.ordinal
_pdbx_vrpt_instance_clashes.instance_id
_pdbx_vrpt_instance_clashes.label_atom_id
_pdbx_vrpt_instance_clashes.cid
_pdbx_vrpt_instance_clashes.clashmag
_pdbx_vrpt_instance_clashes.dist
 1   21  HG3      1  0.42  2.19  
 2   23  O        2  0.42  2.19  
 3   27  HG23     2  0.42  2.19  
 4   70  "C2'"    3  0.81  2.10  
 5   70  "H2''"   4  0.74  1.69  
 6   70  "H2'"    5  0.52  2.45  
 7   70  "H2'"    6  0.49  1.92  
 8   70  "H2'"    7  0.47  1.79  
 9   71  "H5'"    3  0.81  2.10  
10   71  "H5'"    4  0.74  1.69  
11   71  "H5'"    6  0.49  1.92  
12   71  "H2''"   8  0.58  1.84  
13   71  C6       5  0.52  2.45  
14   71  H6       7  0.47  1.79  
15   71  "H2'"    9  0.44  2.52  
16   71  "C2'"   10  0.43  2.48  
17   72  "H5'"    8  0.58  1.84  
18   72  "H5'"   10  0.43  2.48  
19   72  C6       9  0.44  2.52  
20   72  "H2'"   11  0.41  2.56  
21   73  "H2'"   12  0.46  2.51  
22   73  C6      11  0.41  2.56  
23   74  "H2''"  13  0.57  2.03  
24   74  C8      12  0.46  2.51  
25   75  "O5'"   13  0.57  2.03  
26   76  "H2''"  14  0.96  1.96  
27   76  "H2''"  15  0.95  1.48  
28   76  "H2''"  16  0.72  1.71  
29   76  "C2'"   17  0.67  2.23  
30   76  "C2'"   18  0.63  2.76  
31   77  "C5'"   14  0.96  1.96  
32   77  "C5'"   18  0.63  2.76  
33   77  "H5'"   15  0.95  1.48  
34   77  "H5''"  16  0.72  1.71  
35   77  "H5''"  17  0.67  2.23  
36   79  "H2''"  19  0.47  2.15  
37   80  OP2     19  0.47  2.15  
38   81  C2      20  0.65  2.84  
39   81  C5      21  0.48  3.01  
40   81  C6      22  0.41  3.08  
41   82  C2      20  0.65  2.84  
42   82  C4      21  0.48  3.01  
43   82  C4      22  0.41  3.08  
44   84  "C2'"   23  0.59  2.33  
45   84  "H2''"  24  0.45  1.96  
46   85  "H5'"   23  0.59  2.33  
47   85  "H5'"   24  0.45  1.96  
48   90  "H2''"  25  0.98  1.45  
49   90  "H2''"  26  0.79  2.12  
50   91  "H2''"  27  1.03  1.56  
51   91  "H2''"  28  0.60  2.31  
52   91  "H5'"   25  0.98  1.45  
53   91  "C5'"   26  0.79  2.12  
54   91  "C2'"   29  0.64  2.41  
55   92  "O5'"   27  1.03  1.56  
56   92  "O5'"   29  0.64  2.41  
57   92  "C5'"   28  0.60  2.31  
58   92  "H2''"  30  0.42  2.19  
59   93  OP2     30  0.42  2.19  
60   93  "H2''"  31  0.41  2.21  
61   94  OP2     31  0.41  2.21  
62   96  "H2'"   32  0.78  1.66  
63   96  "C2'"   33  0.67  2.24  
64   97  "H5'"   32  0.78  1.66  
65   97  "H5'"   33  0.67  2.24  
66  100  O        1  0.42  2.19  
#
loop_
_pdbx_vrpt_instance_intra_angle_outliers.ordinal
_pdbx_vrpt_instance_intra_angle_outliers.instance_id
_pdbx_vrpt_instance_intra_angle_outliers.atom_1
_pdbx_vrpt_instance_intra_angle_outliers.atom_2
_pdbx_vrpt_instance_intra_angle_outliers.atom_3
_pdbx_vrpt_instance_intra_angle_outliers.obs
_pdbx_vrpt_instance_intra_angle_outliers.mean
_pdbx_vrpt_instance_intra_angle_outliers.stdev
_pdbx_vrpt_instance_intra_angle_outliers.Z
1  77  C2     N3     C4     113.624  110.600  0.500   6.05  
2  77  N1     C2     N3     126.011  129.300  0.500  -6.58  
3  82  "O4'"  "C1'"  N1     112.779  108.000  0.700   6.83  
4  82  "O4'"  "C4'"  "C3'"  100.809  106.000  0.600  -8.65  
5  96  "O4'"  "C1'"  N9     112.102  108.000  0.700   5.86  
6  96  "O4'"  "C4'"  "C3'"  100.724  106.000  0.600  -8.79  
#
loop_
_pdbx_vrpt_model_instance_density.ordinal
_pdbx_vrpt_model_instance_density.instance_id
_pdbx_vrpt_model_instance_density.natoms_eds
_pdbx_vrpt_model_instance_density.RSRCC
_pdbx_vrpt_model_instance_density.RSR
_pdbx_vrpt_model_instance_density.RSRZ
  1    1   4  0.758  0.263   1.731  
  2    2   4  0.941  0.204   0.863  
  3    3  11  0.915  0.238   0.724  
  4    4   7  0.941  0.219   1.109  
  5    5  11  0.860  0.178  -0.072  
  6    6   9  0.970  0.154  -0.299  
  7    7  10  0.883  0.197   0.615  
  8    8   8  0.970  0.149  -0.308  
  9    9   8  0.945  0.137  -0.504  
 10   10   6  0.982  0.243   1.436  
 11   11   8  0.949  0.163  -0.080  
 12   12   7  0.975  0.126  -0.422  
 13   13  11  0.908  0.215   0.419  
 14   14  11  0.961  0.228   0.592  
 15   15   5  0.963  0.100  -0.789  
 16   16   9  0.964  0.131  -0.612  
 17   17   9  0.950  0.207   0.105  
 18   18  10  0.938  0.140  -0.242  
 19   19  11  0.920  0.177  -0.085  
 20   20   8  0.971  0.114  -0.879  
 21   21  11  0.698  0.367   2.435  
 22   22   9  0.659  0.226   0.463  
 23   23   8  0.986  0.167  -0.015  
 24   24   9  0.952  0.166  -0.403  
 25   25   8  0.956  0.195   0.487  
 26   26   9  0.966  0.190   0.190  
 27   27   7  0.981  0.268   1.811  
 28   28   9  0.913  0.279   0.998  
 29   29   9  0.791  0.349   1.991  
 30   30  11  0.964  0.188   0.499  
 31   31   5  0.819  0.214   1.058  
 32   32   8  0.816  0.246   1.173  
 33   33   9  0.940  0.290   1.134  
 34   34   9  0.921  0.186  -0.034  
 35   35   9  0.961  0.138  -0.630  
 36   36   4  0.939  0.260   1.687  
 37   37   4  0.937  0.321   2.584  
 38   38   8  0.935  0.122  -0.573  
 39   39   7  0.989  0.168   0.136  
 40   40   9  0.899  0.204   0.068  
 41   41   5  0.971  0.159   0.167  
 42   42   7  0.964  0.282   2.045  
 43   43   9  0.940  0.393   5.162  
 44   44   9  0.940  0.393   5.162  
 45   45   8  0.970  0.302   2.188  
 46   46   7  0.976  0.308   2.532  
 47   47   8  0.972  0.390   3.623  
 48   48  11  0.951  0.354   3.280  
 49   49   8  0.971  0.248   1.307  
 50   50   8  0.955  0.219   0.834  
 51   51   5  0.959  0.156   0.118  
 52   52   8  0.941  0.157  -0.178  
 53   53  11  0.958  0.119  -0.854  
 54   54   5  0.963  0.199   0.815  
 55   55  11  0.875  0.245   0.817  
 56   56   8  0.937  0.183   0.338  
 57   57   9  0.857  0.179  -0.120  
 58   58  10  0.928  0.202   0.690  
 59   59  11  0.782  0.322   1.838  
 60   60   9  0.920  0.120  -0.762  
 61   61   5  0.974  0.113  -0.579  
 62   62   8  0.875  0.181   0.258  
 63   63   9  0.854  0.278   1.109  
 64   64   8  0.932  0.263   1.551  
 65   65   9  0.873  0.223   0.426  
 66   66   5  0.933  0.119  -0.481  
 67   67   8  0.982  0.166   0.002  
 68   68   8  0.916  0.211   0.938  
 69   69   9  0.601  0.379   2.762  
 70   70   8  0.580  0.286   1.822  
 71   71  19  0.961  0.106  -0.934  
 72   72  20  0.953  0.147  -0.343  
 73   73  20  0.966  0.126  -0.640  
 74   74  21  0.935  0.145  -0.328  
 75   75  21  0.932  0.249   1.258  
 76   76  19  0.959  0.230   1.112  
 77   77  21  0.948  0.141  -0.389  
 78   78  21  0.940  0.114  -0.800  
 79   79  21  0.884  0.161  -0.084  
 80   80  21  0.814  0.201   0.526  
 81   81  21  0.954  0.118  -0.739  
 82   82  19  0.920  0.117  -0.752  
 83   83  19  0.913  0.198   0.584  
 84   84   8  0.732  0.254   1.168  
 85   85  22  0.960  0.113  -0.824  
 86   86  22  0.964  0.135  -0.437  
 87   87  20  0.965  0.131  -0.569  
 88   88  20  0.938  0.143  -0.400  
 89   89  20  0.952  0.253   1.154  
 90   90  20  0.972  0.232   0.857  
 91   91  20  0.961  0.125  -0.654  
 92   92  22  0.948  0.122  -0.665  
 93   93  20  0.907  0.147  -0.343  
 94   94  20  0.878  0.183   0.165  
 95   95  21  0.958  0.132  -0.526  
 96   96  21  0.920  0.107  -0.907  
 97   97  22  0.923  0.209   0.866  
 98   98   1  0.815  0.107       ?  
 99   99   1  0.941  0.595       ?  
100  100   1  0.798  0.466       ?  
101  101   1  0.748  0.211       ?  
102  102   1  0.911  0.418       ?  
103  103   1  0.860  0.178       ?  
104  104   1  0.699  0.152       ?  
105  105   1  0.944  0.245       ?  
#
loop_
_pdbx_vrpt_software.ordinal
_pdbx_vrpt_software.name
_pdbx_vrpt_software.version
_pdbx_vrpt_software.success_y_or_n
1  molprobity   4.02b-467                                                             Y  
2  eds          2.36                                                                  Y  
3  dcc          '"2.27  (2023-04-10)"'                                                Y  
4  xtriage      1.13                                                                  Y  
5  percentiles  "20191225.v01 (using entries in the PDB archive December 25th 2019)"  Y  
##
