data_2YDH

loop_
_pdbx_vrpt_database.id
_pdbx_vrpt_database.code
PDB   2YDH       
PDBE  EBI-47769  
#
_pdbx_vrpt_exptl.ordinal  1
_pdbx_vrpt_exptl.method   x-ray
#
_pdbx_vrpt_summary.entry_id                    2YDH
_pdbx_vrpt_summary.PDB_deposition_date         2011-03-21
_pdbx_vrpt_summary.PDB_revision_number         4
_pdbx_vrpt_summary.PDB_revision_date           2023-12-20
_pdbx_vrpt_summary.RNA_suiteness               0.34
_pdbx_vrpt_summary.report_creation_date        2023-12-14:17:06
_pdbx_vrpt_summary.attempted_validation_steps  molprobity,validation-pack,xtriage,eds,mogul,buster-report,percentiles,writexml,writecif,writepdf
_pdbx_vrpt_summary.ligands_for_buster_report   Y
#
loop_
_pdbx_vrpt_entity.id
_pdbx_vrpt_entity.type
_pdbx_vrpt_entity.description
1  polymer      "SAM-I RIBOSWITCH"  
2  non-polymer  "BARIUM ION"  
3  non-polymer  S-ADENOSYLMETHIONINE  
4  water        water  
#
loop_
_pdbx_vrpt_asym.label_asym_id
_pdbx_vrpt_asym.entity_id
A  1  
B  2  
C  2  
D  2  
E  2  
F  2  
G  3  
H  4  
#
loop_
_pdbx_vrpt_percentile_list.id
_pdbx_vrpt_percentile_list.range
_pdbx_vrpt_percentile_list.exp_method
1  all  x-ray  
2  2.9  x-ray  
#
loop_
_pdbx_vrpt_percentile_type.id
_pdbx_vrpt_percentile_type.type
1  all_atom_clashscore    
2  RSRZ_outliers_percent  
3  R_value_R_free         
4  RNAsuiteness_percent   
#
loop_
_pdbx_vrpt_percentile_conditions.id
_pdbx_vrpt_percentile_conditions.percentile_list_id
_pdbx_vrpt_percentile_conditions.type_id
_pdbx_vrpt_percentile_conditions.rank
_pdbx_vrpt_percentile_conditions.number_entries_total
_pdbx_vrpt_percentile_conditions.res_high
_pdbx_vrpt_percentile_conditions.res_low
1  1  1   38.61  141614     ?     ?  
2  2  1   64.78    2172  2.90  2.90  
3  1  2  100.00  127900     ?     ?  
4  2  2  100.00    1906  2.90  2.90  
5  1  3    2.13  130704     ?     ?  
6  2  3    4.61    1957  2.90  2.90  
7  1  4   16.83    3102     ?     ?  
8  2  4   14.40    1007  2.64  3.16  
#
loop_
_pdbx_vrpt_percentile_entity_view.ordinal
_pdbx_vrpt_percentile_entity_view.conditions_id
_pdbx_vrpt_percentile_entity_view.type_id
_pdbx_vrpt_percentile_entity_view.label_asym_id
_pdbx_vrpt_percentile_entity_view.PDB_model_num
_pdbx_vrpt_percentile_entity_view.entity_id
_pdbx_vrpt_percentile_entity_view.auth_asym_id
_pdbx_vrpt_percentile_entity_view.rank
1  3  2  A  1  1  A  100.00  
2  4  2  A  1  1  A  100.00  
#
_pdbx_vrpt_summary_entity_geometry.ordinal          1
_pdbx_vrpt_summary_entity_geometry.PDB_model_num    1
_pdbx_vrpt_summary_entity_geometry.entity_id        1
_pdbx_vrpt_summary_entity_geometry.label_asym_id    A
_pdbx_vrpt_summary_entity_geometry.auth_asym_id     A
_pdbx_vrpt_summary_entity_geometry.angles_RMSZ      1.67
_pdbx_vrpt_summary_entity_geometry.bonds_RMSZ       0.95
_pdbx_vrpt_summary_entity_geometry.num_bonds_RMSZ   2268
_pdbx_vrpt_summary_entity_geometry.num_angles_RMSZ  3535
#
_pdbx_vrpt_summary_geometry.ordinal          1
_pdbx_vrpt_summary_geometry.clashscore       7.45
_pdbx_vrpt_summary_geometry.num_H_reduce     1041
_pdbx_vrpt_summary_geometry.num_bonds_RMSZ   2268
_pdbx_vrpt_summary_geometry.bonds_RMSZ       0.95
_pdbx_vrpt_summary_geometry.num_angles_RMSZ  3535
_pdbx_vrpt_summary_geometry.angles_RMSZ      1.67
#
_pdbx_vrpt_summary_diffraction.exp_method                x-ray
_pdbx_vrpt_summary_diffraction.ordinal                   1
_pdbx_vrpt_summary_diffraction.bulk_solvent_b            54.758
_pdbx_vrpt_summary_diffraction.Wilson_B_estimate         105.937
_pdbx_vrpt_summary_diffraction.I_over_sigma              1.98(2.88A)
_pdbx_vrpt_summary_diffraction.num_miller_indices        6786
_pdbx_vrpt_summary_diffraction.bulk_solvent_k            0.225
_pdbx_vrpt_summary_diffraction.Padilla_Yeates_L_mean     0.489
_pdbx_vrpt_summary_diffraction.Padilla_Yeates_L2_mean    0.325
_pdbx_vrpt_summary_diffraction.Fo_Fc_correlation         0.921
_pdbx_vrpt_summary_diffraction.DCC_R                     0.27
_pdbx_vrpt_summary_diffraction.DCC_Rfree                 0.32
_pdbx_vrpt_summary_diffraction.EDS_R                     0.28
_pdbx_vrpt_summary_diffraction.EDS_res_high              2.90
_pdbx_vrpt_summary_diffraction.EDS_res_low               20.46
_pdbx_vrpt_summary_diffraction.Wilson_B_aniso            "[113.539,113.539,95.363,0.000,0.000,0.000]"
_pdbx_vrpt_summary_diffraction.data_anisotropy           0.169
_pdbx_vrpt_summary_diffraction.trans_NCS_details         "The largest off-origin peak in the Patterson function is 5.49% of the height of the origin peak. No significant pseudotranslation is detected."
_pdbx_vrpt_summary_diffraction.B_factor_type             FULL
_pdbx_vrpt_summary_diffraction.acentric_outliers         0
_pdbx_vrpt_summary_diffraction.centric_outliers          0
_pdbx_vrpt_summary_diffraction.data_completeness         92.90
_pdbx_vrpt_summary_diffraction.number_reflns_R_free      666
_pdbx_vrpt_summary_diffraction.percent_free_reflections  9.81
_pdbx_vrpt_summary_diffraction.percent_RSRZ_outliers     0.00
_pdbx_vrpt_summary_diffraction.PDB_resolution_high       2.90
_pdbx_vrpt_summary_diffraction.PDB_resolution_low        57.62
_pdbx_vrpt_summary_diffraction.PDB_R                     0.27
_pdbx_vrpt_summary_diffraction.PDB_Rfree                 0.32
#
loop_
_pdbx_vrpt_model_instance.id
_pdbx_vrpt_model_instance.PDB_model_num
_pdbx_vrpt_model_instance.entity_id
_pdbx_vrpt_model_instance.label_asym_id
_pdbx_vrpt_model_instance.label_seq_id
_pdbx_vrpt_model_instance.label_comp_id
_pdbx_vrpt_model_instance.auth_asym_id
_pdbx_vrpt_model_instance.auth_seq_id
_pdbx_vrpt_model_instance.label_alt_id
_pdbx_vrpt_model_instance.PDB_ins_code
_pdbx_vrpt_model_instance.count_bond_outliers
_pdbx_vrpt_model_instance.count_angle_outliers
_pdbx_vrpt_model_instance.count_clashes
_pdbx_vrpt_model_instance.count_mogul_bond_outliers
_pdbx_vrpt_model_instance.count_mogul_angle_outliers
_pdbx_vrpt_model_instance.count_mogul_torsion_outliers
  1  1  1  A   1  G    A     1  .  ?        1     4     2     ?     ?     ?  
  2  1  1  A   2  G    A     2  .  ?        ?     ?     ?     ?     ?     ?  
  3  1  1  A   3  C    A     3  .  ?        ?     1     ?     ?     ?     ?  
  4  1  1  A   4  U    A     4  .  ?        ?     ?     ?     ?     ?     ?  
  5  1  1  A   5  U    A     5  .  ?        ?     ?     ?     ?     ?     ?  
  6  1  1  A   6  A    A     6  .  ?        ?     ?     ?     ?     ?     ?  
  7  1  1  A   7  U    A     7  .  ?        ?     ?     ?     ?     ?     ?  
  8  1  1  A   8  C    A     8  .  ?        ?     4     ?     ?     ?     ?  
  9  1  1  A   9  A    A     9  .  ?        ?     2     1     ?     ?     ?  
 10  1  1  A  10  A    A    10  .  ?        ?     ?     ?     ?     ?     ?  
 11  1  1  A  11  G    A    11  .  ?        ?     ?     ?     ?     ?     ?  
 12  1  1  A  12  A    A    12  .  ?        ?     ?     ?     ?     ?     ?  
 13  1  1  A  13  G    A    13  .  ?        ?     ?     ?     ?     ?     ?  
 14  1  1  A  14  A    A    14  .  ?        ?     ?     ?     ?     ?     ?  
 15  1  1  A  15  G    A    15  .  ?        ?     ?     ?     ?     ?     ?  
 16  1  1  A  16  G    A    16  .  ?        ?     ?     ?     ?     ?     ?  
 17  1  1  A  17  U    A    17  .  ?        ?     ?     ?     ?     ?     ?  
 18  1  1  A  18  U    A    18  .  ?        ?     ?     ?     ?     ?     ?  
 19  1  1  A  19  U    A    19  .  ?        ?     ?     ?     ?     ?     ?  
 20  1  1  A  20  A    A    20  .  ?        ?     ?     1     ?     ?     ?  
 21  1  1  A  21  G    A    21  .  ?        ?     ?     ?     ?     ?     ?  
 22  1  1  A  22  G    A    22  .  ?        ?     ?     1     ?     ?     ?  
 23  1  1  A  23  G    A    23  .  ?        ?     1     ?     ?     ?     ?  
 24  1  1  A  24  A    A    24  .  ?        ?     ?     ?     ?     ?     ?  
 25  1  1  A  25  C    A    25  .  ?        ?     ?     ?     ?     ?     ?  
 26  1  1  A  26  U    A    26  .  ?        ?     ?     ?     ?     ?     ?  
 27  1  1  A  27  G    A    27  .  ?        ?     ?     ?     ?     ?     ?  
 28  1  1  A  28  G    A    28  .  ?        ?     ?     ?     ?     ?     ?  
 29  1  1  A  29  C    A    29  .  ?        ?     ?     ?     ?     ?     ?  
 30  1  1  A  30  C    A    30  .  ?        ?     ?     ?     ?     ?     ?  
 31  1  1  A  31  C    A    31  .  ?        ?     ?     ?     ?     ?     ?  
 32  1  1  A  32  G    A    32  .  ?        ?     ?     ?     ?     ?     ?  
 33  1  1  A  33  A    A    33  .  ?        ?     1     ?     ?     ?     ?  
 34  1  1  A  34  C    A    34  .  ?        ?     ?     ?     ?     ?     ?  
 35  1  1  A  35  G    A    35  .  ?        ?     ?     1     ?     ?     ?  
 36  1  1  A  36  A    A    36  .  ?        ?     ?     ?     ?     ?     ?  
 37  1  1  A  37  A    A    37  .  ?        ?     ?     1     ?     ?     ?  
 38  1  1  A  38  A    A    38  .  ?        ?     ?     ?     ?     ?     ?  
 39  1  1  A  39  C    A    39  .  ?        ?     ?     ?     ?     ?     ?  
 40  1  1  A  40  C    A    40  .  ?        ?     1     1     ?     ?     ?  
 41  1  1  A  41  C    A    41  .  ?        ?     ?     1     ?     ?     ?  
 42  1  1  A  42  G    A    42  .  ?        ?     ?     ?     ?     ?     ?  
 43  1  1  A  43  G    A    43  .  ?        ?     2     2     ?     ?     ?  
 44  1  1  A  44  C    A    44  .  ?        ?     ?     2     ?     ?     ?  
 45  1  1  A  45  A    A    45  .  ?        ?     ?     ?     ?     ?     ?  
 46  1  1  A  46  A    A    46  .  ?        ?     2     ?     ?     ?     ?  
 47  1  1  A  47  C    A    47  .  ?        ?     ?     1     ?     ?     ?  
 48  1  1  A  48  C    A    48  .  ?        ?     ?     ?     ?     ?     ?  
 49  1  1  A  49  A    A    49  .  ?        ?     ?     ?     ?     ?     ?  
 50  1  1  A  50  G    A    50  .  ?        ?     7     ?     ?     ?     ?  
 51  1  1  A  51  A    A    51  .  ?        ?     ?     ?     ?     ?     ?  
 52  1  1  A  52  A    A    52  .  ?        ?     ?     ?     ?     ?     ?  
 53  1  1  A  53  A    A    53  .  ?        ?     ?     ?     ?     ?     ?  
 54  1  1  A  54  U    A    54  .  ?        ?     1     ?     ?     ?     ?  
 55  1  1  A  55  G    A    55  .  ?        ?     ?     ?     ?     ?     ?  
 56  1  1  A  56  G    A    56  .  ?        ?     ?     ?     ?     ?     ?  
 57  1  1  A  57  U    A    57  .  ?        ?     ?     1     ?     ?     ?  
 58  1  1  A  58  G    A    58  .  ?        ?     3     1     ?     ?     ?  
 59  1  1  A  59  C    A    59  .  ?        ?     ?     2     ?     ?     ?  
 60  1  1  A  60  C    A    60  .  ?        ?     ?     ?     ?     ?     ?  
 61  1  1  A  61  A    A    61  .  ?        ?     2     ?     ?     ?     ?  
 62  1  1  A  62  A    A    62  .  ?        ?     1     2     ?     ?     ?  
 63  1  1  A  63  U    A    63  .  ?        ?     ?     1     ?     ?     ?  
 64  1  1  A  64  U    A    64  .  ?        ?     1     1     ?     ?     ?  
 65  1  1  A  65  C    A    65  .  ?        ?     ?     1     ?     ?     ?  
 66  1  1  A  66  C    A    66  .  ?        ?     1     1     ?     ?     ?  
 67  1  1  A  67  U    A    67  .  ?        ?     ?     ?     ?     ?     ?  
 68  1  1  A  68  G    A    68  .  ?        ?     1     ?     ?     ?     ?  
 69  1  1  A  69  C    A    69  .  ?        ?     ?     1     ?     ?     ?  
 70  1  1  A  70  A    A    70  .  ?        ?     ?     1     ?     ?     ?  
 71  1  1  A  71  G    A    71  .  ?        ?     1     1     ?     ?     ?  
 72  1  1  A  72  C    A    72  .  ?        ?     ?     1     ?     ?     ?  
 73  1  1  A  73  G    A    73  .  ?        ?     ?     ?     ?     ?     ?  
 74  1  1  A  74  G    A    74  .  ?        ?     ?     1     ?     ?     ?  
 75  1  1  A  75  A    A    75  .  ?        ?     ?     ?     ?     ?     ?  
 76  1  1  A  76  A    A    76  .  ?        ?     1     1     ?     ?     ?  
 77  1  1  A  77  A    A    77  .  ?        ?     ?     ?     ?     ?     ?  
 78  1  1  A  78  C    A    78  .  ?        ?     ?     ?     ?     ?     ?  
 79  1  1  A  79  G    A    79  .  ?        ?     ?     ?     ?     ?     ?  
 80  1  1  A  80  U    A    80  .  ?        ?     ?     ?     ?     ?     ?  
 81  1  1  A  81  U    A    81  .  ?        ?     ?     ?     ?     ?     ?  
 82  1  1  A  82  G    A    82  .  ?        ?     ?     1     ?     ?     ?  
 83  1  1  A  83  A    A    83  .  ?        ?     ?     2     ?     ?     ?  
 84  1  1  A  84  A    A    84  .  ?        ?     ?     1     ?     ?     ?  
 85  1  1  A  85  A    A    85  .  ?        ?     ?     ?     ?     ?     ?  
 86  1  1  A  86  G    A    86  .  ?        ?     ?     ?     ?     ?     ?  
 87  1  1  A  87  A    A    87  .  ?        1     1     ?     ?     ?     ?  
 88  1  1  A  88  U    A    88  .  ?        ?     1     ?     ?     ?     ?  
 89  1  1  A  89  G    A    89  .  ?        ?     ?     ?     ?     ?     ?  
 90  1  1  A  90  A    A    90  .  ?        ?     2     ?     ?     ?     ?  
 91  1  1  A  91  G    A    91  .  ?        ?     1     ?     ?     ?     ?  
 92  1  1  A  92  C    A    92  .  ?        ?     1     ?     ?     ?     ?  
 93  1  1  A  93  C    A    93  .  ?        ?     ?     ?     ?     ?     ?  
 94  1  1  A  94  G    A    94  .  ?        ?     5     ?     ?     ?     ?  
 95  1  2  B   .  BA   A  1095  .  ?        ?     ?     ?     ?     ?     ?  
 96  1  2  C   .  BA   A  1096  .  ?        ?     ?     ?     ?     ?     ?  
 97  1  2  D   .  BA   A  1097  .  ?        ?     ?     ?     ?     ?     ?  
 98  1  2  E   .  BA   A  1098  .  ?        ?     ?     ?     ?     ?     ?  
 99  1  2  F   .  BA   A  1099  .  ?        ?     ?     ?     ?     ?     ?  
100  1  3  G   .  SAM  A  1100  .  ?        ?     ?     3     2     4     1  
101  1  4  H   .  HOH  A  2001  .  ?        ?     ?     ?     ?     ?     ?  
102  1  4  H   .  HOH  A  2002  .  ?        ?     ?     1     ?     ?     ?  
#
loop_
_pdbx_vrpt_model_instance_geometry.ordinal
_pdbx_vrpt_model_instance_geometry.instance_id
_pdbx_vrpt_model_instance_geometry.RNA_score
_pdbx_vrpt_model_instance_geometry.RNA_suite
_pdbx_vrpt_model_instance_geometry.RNA_pucker
_pdbx_vrpt_model_instance_geometry.num_H_reduce
_pdbx_vrpt_model_instance_geometry.OWAB
_pdbx_vrpt_model_instance_geometry.num_bonds_RMSZ
_pdbx_vrpt_model_instance_geometry.bonds_RMSZ
_pdbx_vrpt_model_instance_geometry.num_angles_RMSZ
_pdbx_vrpt_model_instance_geometry.angles_RMSZ
_pdbx_vrpt_model_instance_geometry.program_for_bond_angle_geometry
_pdbx_vrpt_model_instance_geometry.average_occupancy
  1    1  0.00  NotAvailable       ?          11   97.030    27  2.16    41  2.62  molprobity  1.000  
  2    2  0.00  NonRotameric       ?          11   90.610    26  0.88    41  1.18  molprobity  1.000  
  3    3  0.05  Rotameric          ?          11   79.690    22  0.83    34  1.70  molprobity  1.000  
  4    4  0.58  Rotameric          ?          10   69.820    22  1.04    34  1.60  molprobity  1.000  
  5    5  0.68  Rotameric          ?          10   69.110    22  0.90    34  1.70  molprobity  1.000  
  6    6  0.12  Rotameric          ?          11   66.560    25  1.05    39  1.65  molprobity  1.000  
  7    7  0.84  Rotameric          ?          10   78.270    22  1.03    34  1.82  molprobity  1.000  
  8    8  0.89  Rotameric          ?          11   80.020    22  1.42    34  2.57  molprobity  1.000  
  9    9  0.00  NonRotameric       outlier    11   97.310    25  1.55    39  2.31  molprobity  0.636  
 10   10  0.00  Triaged/NotBinned  ?          11  100.090    25  0.69    39  0.98  molprobity  1.000  
 11   11  0.03  Rotameric          ?          11  106.710    26  0.80    41  1.29  molprobity  1.000  
 12   12  0.50  Rotameric          ?          11  119.530    25  0.51    39  0.88  molprobity  1.000  
 13   13  0.06  Rotameric          ?          11  136.450    26  0.63    41  1.26  molprobity  1.000  
 14   14  0.00  Triaged/NotBinned  ?          11  147.900    25  0.74    39  1.18  molprobity  1.000  
 15   15  0.00  Triaged/NotBinned  ?          11  146.000    26  0.68    41  1.40  molprobity  1.000  
 16   16  0.00  NonRotameric       ?          11  137.870    26  0.59    41  1.23  molprobity  1.000  
 17   17  0.06  Rotameric          ?          10  135.210    22  0.86    34  1.52  molprobity  1.000  
 18   18  0.37  Rotameric          ?          10  126.800    22  0.75    34  1.18  molprobity  1.000  
 19   19  0.00  NonRotameric       ?          10  125.140    22  0.89    34  1.50  molprobity  1.000  
 20   20  0.00  NonRotameric       ?          11  121.270    25  0.79    39  1.39  molprobity  1.000  
 21   21  0.38  Rotameric          ?          11  117.010    26  0.62    41  1.35  molprobity  1.000  
 22   22  0.78  Rotameric          ?          11  104.220    26  1.12    41  1.92  molprobity  1.000  
 23   23  0.50  Rotameric          ?          11  103.810    26  0.90    41  1.91  molprobity  1.000  
 24   24  0.00  NonRotameric       ?          11   97.060    25  0.95    39  1.36  molprobity  1.000  
 25   25  0.44  Rotameric          ?          11  101.350    22  0.78    34  1.24  molprobity  1.000  
 26   26  0.43  Rotameric          ?          10  110.850    22  0.75    34  1.70  molprobity  1.000  
 27   27  0.08  Rotameric          ?          11  113.070    26  0.81    41  1.31  molprobity  1.000  
 28   28  0.30  Rotameric          ?          11  101.800    26  0.78    41  1.34  molprobity  1.000  
 29   29  0.73  Rotameric          ?          11   92.530    22  0.77    34  1.57  molprobity  1.000  
 30   30  0.00  NonRotameric       ?          11   99.450    22  0.85    34  1.70  molprobity  1.000  
 31   31  0.64  Rotameric          ?          11   96.930    22  0.73    34  1.61  molprobity  1.000  
 32   32  0.79  Rotameric          ?          11   99.510    26  0.66    41  1.65  molprobity  1.000  
 33   33  0.00  NonRotameric       outlier    11  110.920    25  0.69    39  1.59  molprobity  1.000  
 34   34  0.00  Triaged/NotBinned  ?          11  123.770    22  0.80    34  1.29  molprobity  1.000  
 35   35  0.00  NonRotameric       ?          11  122.110    26  0.66    41  0.91  molprobity  1.000  
 36   36  0.58  Rotameric          ?          11  119.430    25  0.84    39  1.15  molprobity  1.000  
 37   37  0.55  Rotameric          ?          11  126.950    25  0.57    39  1.39  molprobity  1.000  
 38   38  0.70  Rotameric          ?          11  116.970    25  0.77    39  0.90  molprobity  1.000  
 39   39  0.66  Rotameric          ?          11  118.510    22  0.54    34  1.41  molprobity  1.000  
 40   40  0.07  Rotameric          ?          11  124.750    22  0.66    34  1.73  molprobity  1.000  
 41   41  0.70  Rotameric          ?          11  129.950    22  0.54    34  1.32  molprobity  1.000  
 42   42  0.09  Rotameric          ?          11  117.760    26  0.66    41  1.00  molprobity  1.000  
 43   43  0.04  Rotameric          ?          11  105.770    26  0.87    41  2.17  molprobity  1.000  
 44   44  0.34  Rotameric          ?          11   99.250    22  1.10    34  2.01  molprobity  1.000  
 45   45  0.46  Rotameric          ?          11   97.660    25  0.84    39  1.74  molprobity  1.000  
 46   46  0.03  Rotameric          ?          11   86.350    25  1.19    39  1.78  molprobity  1.000  
 47   47  0.62  Rotameric          ?          11   80.170    22  0.80    34  1.26  molprobity  1.000  
 48   48  0.01  Rotameric          ?          11   76.000    22  0.72    34  1.42  molprobity  1.000  
 49   49  0.82  Rotameric          ?          11   89.490    25  0.77    39  1.48  molprobity  1.000  
 50   50  0.47  Rotameric          ?          11   97.120    26  1.50    41  3.11  molprobity  1.000  
 51   51  0.01  Rotameric          ?          11  105.450    25  0.95    39  1.44  molprobity  1.000  
 52   52  0.07  Rotameric          ?          11  119.150    25  0.70    39  1.00  molprobity  1.000  
 53   53  0.00  Triaged/NotBinned  ?          11  124.180    25  0.53    39  1.08  molprobity  1.000  
 54   54  0.57  Rotameric          ?          10  108.920    22  0.87    34  1.60  molprobity  1.000  
 55   55  0.03  Rotameric          ?          11   81.130    26  0.83    41  1.98  molprobity  1.000  
 56   56  0.52  Rotameric          ?          11   80.830    26  0.91    41  1.79  molprobity  1.000  
 57   57  0.01  Rotameric          ?          10   70.360    22  1.19    34  1.80  molprobity  1.000  
 58   58  0.19  Rotameric          ?          11   72.360    26  1.17    41  2.57  molprobity  1.000  
 59   59  0.45  Rotameric          ?          11   72.620    22  1.17    34  1.90  molprobity  1.000  
 60   60  0.06  Rotameric          ?          11   85.950    22  0.76    34  1.14  molprobity  1.000  
 61   61  0.00  Triaged/NotBinned  ?          11   83.120    25  1.29    39  2.14  molprobity  1.000  
 62   62  0.06  Rotameric          ?          11   85.320    25  0.78    39  1.66  molprobity  1.000  
 63   63  0.11  Rotameric          ?          10   82.450    22  0.98    34  1.50  molprobity  1.000  
 64   64  0.06  Rotameric          outlier     9   73.800    22  0.91    34  1.53  molprobity  1.000  
 65   65  0.00  NonRotameric       ?          11   81.740    22  1.07    34  1.36  molprobity  1.000  
 66   66  0.54  Rotameric          ?          11   85.080    22  1.26    34  2.07  molprobity  1.000  
 67   67  0.81  Rotameric          ?          10   93.940    22  1.01    34  1.61  molprobity  1.000  
 68   68  0.48  Rotameric          outlier    11   99.510    26  1.03    41  1.65  molprobity  1.000  
 69   69  0.00  Triaged/NotBinned  ?          11  105.780    22  0.94    34  1.29  molprobity  1.000  
 70   70  0.04  Rotameric          ?          11   98.470    25  0.80    39  1.61  molprobity  1.000  
 71   71  0.34  Rotameric          ?          11   94.260    26  1.07    41  1.64  molprobity  1.000  
 72   72  0.62  Rotameric          ?          11   90.280    22  1.34    34  2.07  molprobity  1.000  
 73   73  0.56  Rotameric          ?          11   94.140    26  0.61    41  1.29  molprobity  1.000  
 74   74  0.51  Rotameric          ?          11   93.830    26  1.19    41  1.11  molprobity  1.000  
 75   75  0.17  Rotameric          ?          11   84.770    25  0.92    39  1.72  molprobity  1.000  
 76   76  0.00  NonRotameric       ?          11   80.320    25  0.85    39  1.52  molprobity  1.000  
 77   77  0.00  NonRotameric       ?          11   75.220    25  0.82    39  1.14  molprobity  1.000  
 78   78  0.00  NonRotameric       ?          11   68.840    22  1.04    34  2.09  molprobity  1.000  
 79   79  0.83  Rotameric          ?          11   69.790    26  0.78    41  1.69  molprobity  1.000  
 80   80  0.92  Rotameric          ?          10   75.870    22  0.75    34  1.40  molprobity  1.000  
 81   81  0.06  Rotameric          ?          10   87.010    22  0.84    34  1.65  molprobity  1.000  
 82   82  0.84  Rotameric          ?          11   92.730    26  0.58    41  1.36  molprobity  1.000  
 83   83  0.00  NonRotameric       ?          11  102.580    25  0.66    39  1.38  molprobity  1.000  
 84   84  0.46  Rotameric          ?          11  102.480    25  0.66    39  0.89  molprobity  1.000  
 85   85  0.45  Rotameric          ?          11   92.560    25  0.80    39  1.27  molprobity  1.000  
 86   86  0.60  Rotameric          ?          11   84.400    26  0.89    41  2.05  molprobity  1.000  
 87   87  0.08  Rotameric          ?          11   71.180    25  1.54    39  1.95  molprobity  1.000  
 88   88  0.62  Rotameric          ?          10   62.860    22  1.15    34  2.32  molprobity  1.000  
 89   89  0.57  Rotameric          ?          11   62.440    26  0.98    41  1.88  molprobity  1.000  
 90   90  0.88  Rotameric          ?          11   62.220    25  1.62    39  2.52  molprobity  1.000  
 91   91  0.62  Rotameric          ?          11   73.050    26  0.81    41  1.91  molprobity  1.000  
 92   92  0.55  Rotameric          ?          11   71.970    22  0.83    34  1.62  molprobity  1.000  
 93   93  0.05  Rotameric          ?          11   75.200    22  1.16    34  1.70  molprobity  1.000  
 94   94  0.00  Triaged/NotBinned  ?          12   91.190    25  1.30    37  2.98  molprobity  1.000  
 95   95     ?  ?                  ?           ?  152.650     ?     ?     ?     ?  ?           1.000  
 96   96     ?  ?                  ?           ?  186.990     ?     ?     ?     ?  ?           1.000  
 97   97     ?  ?                  ?           ?  168.620     ?     ?     ?     ?  ?           1.000  
 98   98     ?  ?                  ?           ?  124.450     ?     ?     ?     ?  ?           0.500  
 99   99     ?  ?                  ?           ?  175.540     ?     ?     ?     ?  ?           1.000  
100  100     ?  ?                  ?          22   77.300    24  1.32    23  1.60  mogul       1.000  
101  101     ?  ?                  ?           ?   30.000     ?     ?     ?     ?  ?           1.000  
102  102     ?  ?                  ?           ?   30.000     ?     ?     ?     ?  ?           1.000  
#
loop_
_pdbx_vrpt_instance_clashes.ordinal
_pdbx_vrpt_instance_clashes.instance_id
_pdbx_vrpt_instance_clashes.label_atom_id
_pdbx_vrpt_instance_clashes.cid
_pdbx_vrpt_instance_clashes.clashmag
_pdbx_vrpt_instance_clashes.dist
 1    1  "O5'"   1  0.42  2.02  
 2    1  H8      1  0.42  2.02  
 3    9  "H2'"   2  0.60  2.00  
 4   20  H61     3  0.64  1.61  
 5   22  "H4'"   4  0.41  2.01  
 6   35  "H1'"   3  0.64  1.61  
 7   37  "H4'"   4  0.41  2.01  
 8   40  "H2'"   5  0.51  2.46  
 9   41  C6      5  0.51  2.46  
10   43  "H2'"   6  0.65  1.60  
11   43  "H2'"   7  0.56  2.40  
12   44  H6      6  0.65  1.60  
13   44  C6      7  0.56  2.40  
14   47  "O4'"   8  0.57  2.04  
15   57  O4      9  0.68  2.27  
16   58  N3     10  0.45  2.65  
17   59  H6     11  0.48  1.97  
18   59  "O5'"  11  0.48  1.97  
19   62  C6     12  0.53  2.97  
20   62  "C2'"  13  0.44  2.66  
21   63  OP1    13  0.44  2.66  
22   64  "O2'"  14  0.54  2.26  
23   65  C6     12  0.53  2.97  
24   66  OP2    14  0.54  2.26  
25   69  C2     15  0.46  3.03  
26   70  C8     15  0.46  3.03  
27   71  C6     16  0.48  3.01  
28   72  C4     16  0.48  3.01  
29   74  N2     17  0.41  2.36  
30   76  "H3'"  17  0.41  2.36  
31   82  "C2'"  18  0.43  2.67  
32   83  "H2'"  19  0.45  2.52  
33   83  "O5'"  18  0.43  2.67  
34   84  C8     19  0.45  2.52  
35  100  N6      9  0.68  2.27  
36  100  "H2'"   8  0.57  2.04  
37  100  N      10  0.45  2.65  
38  102  O       2  0.60  2.00  
#
loop_
_pdbx_vrpt_instance_intra_bond_outliers.ordinal
_pdbx_vrpt_instance_intra_bond_outliers.instance_id
_pdbx_vrpt_instance_intra_bond_outliers.atom_1
_pdbx_vrpt_instance_intra_bond_outliers.atom_2
_pdbx_vrpt_instance_intra_bond_outliers.obs
_pdbx_vrpt_instance_intra_bond_outliers.mean
_pdbx_vrpt_instance_intra_bond_outliers.stdev
_pdbx_vrpt_instance_intra_bond_outliers.Z
1   1  OP3  P   1.488  1.607  0.012  -9.91  
2  87  N7   C5  1.356  1.388  0.006  -5.29  
#
loop_
_pdbx_vrpt_instance_intra_angle_outliers.ordinal
_pdbx_vrpt_instance_intra_angle_outliers.instance_id
_pdbx_vrpt_instance_intra_angle_outliers.atom_1
_pdbx_vrpt_instance_intra_angle_outliers.atom_2
_pdbx_vrpt_instance_intra_angle_outliers.atom_3
_pdbx_vrpt_instance_intra_angle_outliers.obs
_pdbx_vrpt_instance_intra_angle_outliers.mean
_pdbx_vrpt_instance_intra_angle_outliers.stdev
_pdbx_vrpt_instance_intra_angle_outliers.Z
_pdbx_vrpt_instance_intra_angle_outliers.link
 1   1  C4     C5     N7     113.025  110.800  0.400   5.56  ?     
 2   1  C5     C6     O6     124.795  128.600  0.600  -6.34  ?     
 3   1  C5     N7     C8     101.541  104.300  0.500  -5.52  ?     
 4   1  N1     C6     O6     123.731  119.900  0.600   6.39  ?     
 5   3  "O4'"  "C1'"  N1     112.262  108.200  0.800   5.08  ?     
 6   8  P      "O3'"  "C3'"  128.690  119.700  1.200   7.49  Y     
 7   8  "C4'"  "C3'"  "C2'"   97.577  102.600  1.000  -5.02  ?     
 8   8  N1     C2     O2     115.837  118.900  0.600  -5.11  ?     
 9   8  "O4'"  "C1'"  N1     112.427  108.200  0.800   5.28  ?     
10   9  P      "O3'"  "C3'"  128.074  119.700  1.200   6.98  Y     
11   9  "O4'"  "C1'"  N9     103.647  108.200  0.800  -5.69  ?     
12  23  "O4'"  "C1'"  N9     112.565  108.200  0.800   5.46  ?     
13  33  P      "O3'"  "C3'"  126.997  119.700  1.200   6.08  Y     
14  40  "O4'"  "C1'"  N1     113.742  108.200  0.800   6.93  ?     
15  43  "C3'"  "C2'"  "C1'"  106.489  101.500  0.800   6.24  ?     
16  43  C8     N9     C4     104.219  106.400  0.400  -5.45  ?     
17  46  "O4'"  "C1'"  N9     103.772  108.200  0.800  -5.54  ?     
18  46  "O5'"  P      OP2    101.063  105.700  0.900  -5.15  ?     
19  50  C4     C5     N7     112.862  110.800  0.400   5.16  ?     
20  50  C5     C6     O6     124.492  128.600  0.600  -6.85  ?     
21  50  C6     C5     N7     126.495  130.400  0.600  -6.51  ?     
22  50  C8     N9     C4     103.846  106.400  0.400  -6.39  ?     
23  50  N1     C6     O6     124.704  119.900  0.600   8.01  ?     
24  50  N7     C8     N9     115.934  113.100  0.500   5.67  ?     
25  50  "O4'"  "C1'"  N9     112.327  108.200  0.800   5.16  ?     
26  54  "O4'"  "C1'"  N1     113.279  108.200  0.800   6.35  ?     
27  58  C5     C6     O6     125.034  128.600  0.600  -5.94  ?     
28  58  N1     C6     O6     123.002  119.900  0.600   5.17  ?     
29  58  "O4'"  "C1'"  N9     102.326  108.200  0.800  -7.34  ?     
30  61  P      "O3'"  "C3'"  113.633  119.700  1.200  -5.06  Y     
31  61  "O4'"  "C1'"  N9     113.767  108.200  0.800   6.96  ?     
32  62  "C3'"  "C2'"  "C1'"  106.495  101.500  0.800   6.24  ?     
33  64  "O3'"  P      "O5'"   93.701  104.000  1.900  -5.42  Y     
34  66  "O4'"  "C1'"  N1     114.408  108.200  0.800   7.76  ?     
35  68  P      "O3'"  "C3'"  128.085  119.700  1.200   6.99  Y     
36  71  C8     N9     C4     104.092  106.400  0.400  -5.77  ?     
37  76  N9     "C1'"  "C2'"  122.375  114.000  1.300   6.44  ?     
38  87  N1     C6     N6     122.071  118.600  0.600   5.79  ?     
39  88  "C4'"  "C3'"  "C2'"   94.631  102.600  1.000  -7.97  ?     
40  90  C8     N9     C4     103.098  105.800  0.400  -6.75  ?     
41  90  N9     C4     C5     108.934  105.800  0.400   7.83  ?     
42  91  N3     C2     N2     123.462  119.900  0.700   5.09  ?     
43  92  N1     C2     O2     122.080  118.900  0.600   5.30  ?     
44  94  C5     C6     O6     125.253  128.600  0.600  -5.58  ?     
45  94  C6     C5     N7     127.264  130.400  0.600  -5.23  ?     
46  94  C8     N9     C4     103.835  106.400  0.400  -6.41  ?     
47  94  N1     C6     O6     124.184  119.900  0.600   7.14  ?     
48  94  N7     C8     N9     116.268  113.100  0.500   6.34  ?     
#
loop_
_pdbx_vrpt_instance_mogul_bond_outliers.ordinal
_pdbx_vrpt_instance_mogul_bond_outliers.instance_id
_pdbx_vrpt_instance_mogul_bond_outliers.atom_1
_pdbx_vrpt_instance_mogul_bond_outliers.atom_2
_pdbx_vrpt_instance_mogul_bond_outliers.obsval
_pdbx_vrpt_instance_mogul_bond_outliers.mean
_pdbx_vrpt_instance_mogul_bond_outliers.numobs
_pdbx_vrpt_instance_mogul_bond_outliers.stdev
_pdbx_vrpt_instance_mogul_bond_outliers.Zscore
_pdbx_vrpt_instance_mogul_bond_outliers.mindiff
1  100  C2  N1  1.39  1.33  3580  0.02  2.84  0.00  
2  100  C2  N3  1.39  1.32   173  0.02  4.55  0.01  
#
loop_
_pdbx_vrpt_instance_mogul_angle_outliers.ordinal
_pdbx_vrpt_instance_mogul_angle_outliers.instance_id
_pdbx_vrpt_instance_mogul_angle_outliers.atom_1
_pdbx_vrpt_instance_mogul_angle_outliers.atom_2
_pdbx_vrpt_instance_mogul_angle_outliers.atom_3
_pdbx_vrpt_instance_mogul_angle_outliers.obsval
_pdbx_vrpt_instance_mogul_angle_outliers.mean
_pdbx_vrpt_instance_mogul_angle_outliers.numobs
_pdbx_vrpt_instance_mogul_angle_outliers.stdev
_pdbx_vrpt_instance_mogul_angle_outliers.Zscore
_pdbx_vrpt_instance_mogul_angle_outliers.mindiff
1  100  OXT    C      CA     122.33  113.38   639  3.41   2.62  0.11  
2  100  OXT    C      O      116.57  124.09  7200  2.27  -3.31  0.04  
3  100  "C3'"  "C2'"  "C1'"  104.33  100.98    21  1.51   2.23  1.04  
4  100  N3     C2     N1     120.88  128.68   136  1.56  -4.99  4.29  
#
_pdbx_vrpt_instance_mogul_torsion_outliers.ordinal        1
_pdbx_vrpt_instance_mogul_torsion_outliers.instance_id    100
_pdbx_vrpt_instance_mogul_torsion_outliers.atom_1         CB
_pdbx_vrpt_instance_mogul_torsion_outliers.atom_2         CG
_pdbx_vrpt_instance_mogul_torsion_outliers.atom_3         SD
_pdbx_vrpt_instance_mogul_torsion_outliers.atom_4         CE
_pdbx_vrpt_instance_mogul_torsion_outliers.obsval         152.59
_pdbx_vrpt_instance_mogul_torsion_outliers.mean           56.35
_pdbx_vrpt_instance_mogul_torsion_outliers.numobs         125
_pdbx_vrpt_instance_mogul_torsion_outliers.stdev          34.14
_pdbx_vrpt_instance_mogul_torsion_outliers.mindiff        0.44
_pdbx_vrpt_instance_mogul_torsion_outliers.local_density  4.00
#
loop_
_pdbx_vrpt_model_instance_density.ordinal
_pdbx_vrpt_model_instance_density.instance_id
_pdbx_vrpt_model_instance_density.natoms_eds
_pdbx_vrpt_model_instance_density.RSRCC
_pdbx_vrpt_model_instance_density.RSR
_pdbx_vrpt_model_instance_density.RSRZ
  1    1  24  0.755  0.239   1.189  
  2    2  23  0.869  0.172   0.158  
  3    3  20  0.966  0.148  -0.280  
  4    4  20  0.966  0.135  -0.461  
  5    5  20  0.935  0.147  -0.311  
  6    6  22  0.966  0.108  -0.905  
  7    7  20  0.963  0.105  -0.837  
  8    8  20  0.932  0.133  -0.486  
  9    9  14  0.938  0.133  -0.539  
 10   10  22  0.928  0.155  -0.218  
 11   11  23  0.933  0.207   0.697  
 12   12  22  0.919  0.193   0.338  
 13   13  23  0.932  0.142  -0.303  
 14   14  22  0.751  0.296   1.844  
 15   15  23  0.885  0.237   1.158  
 16   16  23  0.873  0.192   0.466  
 17   17  20  0.929  0.266   1.180  
 18   18  20  0.916  0.131  -0.511  
 19   19  20  0.845  0.167  -0.060  
 20   20  22  0.891  0.188   0.265  
 21   21  23  0.921  0.160  -0.026  
 22   22  23  0.911  0.157  -0.072  
 23   23  23  0.858  0.217   0.851  
 24   24  22  0.870  0.216   0.674  
 25   25  20  0.915  0.192   0.326  
 26   26  20  0.895  0.183   0.140  
 27   27  23  0.806  0.210   0.743  
 28   28  23  0.829  0.201   0.605  
 29   29  20  0.962  0.107  -0.844  
 30   30  20  0.940  0.170   0.023  
 31   31  20  0.942  0.167  -0.018  
 32   32  23  0.913  0.235   1.128  
 33   33  22  0.903  0.181   0.162  
 34   34  20  0.916  0.193   0.340  
 35   35  23  0.883  0.189   0.420  
 36   36  22  0.839  0.243   1.069  
 37   37  22  0.902  0.165  -0.072  
 38   38  22  0.938  0.119  -0.744  
 39   39  20  0.955  0.131  -0.514  
 40   40  20  0.913  0.164  -0.059  
 41   41  20  0.940  0.164  -0.059  
 42   42  23  0.876  0.171   0.143  
 43   43  23  0.929  0.138  -0.365  
 44   44  20  0.930  0.202   0.464  
 45   45  22  0.956  0.195   0.367  
 46   46  22  0.944  0.176   0.089  
 47   47  20  0.937  0.183   0.202  
 48   48  20  0.940  0.163  -0.073  
 49   49  22  0.926  0.170   0.001  
 50   50  23  0.704  0.201   0.605  
 51   51  22  0.846  0.258   1.288  
 52   52  22  0.827  0.165  -0.072  
 53   53  22  0.910  0.193   0.338  
 54   54  20  0.941  0.217   0.566  
 55   55  23  0.924  0.150  -0.180  
 56   56  23  0.939  0.151  -0.165  
 57   57  20  0.948  0.121  -0.637  
 58   58  23  0.954  0.127  -0.534  
 59   59  20  0.966  0.154  -0.197  
 60   60  20  0.939  0.167  -0.018  
 61   61  22  0.949  0.114  -0.817  
 62   62  22  0.958  0.149  -0.306  
 63   63  20  0.937  0.159  -0.160  
 64   64  20  0.955  0.136  -0.449  
 65   65  20  0.909  0.198   0.409  
 66   66  20  0.893  0.210   0.574  
 67   67  20  0.923  0.180   0.103  
 68   68  23  0.931  0.152  -0.149  
 69   69  20  0.925  0.121  -0.652  
 70   70  22  0.932  0.128  -0.613  
 71   71  23  0.822  0.231   1.066  
 72   72  20  0.924  0.180   0.161  
 73   73  23  0.930  0.137  -0.380  
 74   74  23  0.833  0.183   0.328  
 75   75  22  0.897  0.198   0.411  
 76   76  22  0.937  0.164  -0.086  
 77   77  22  0.935  0.162  -0.115  
 78   78  20  0.928  0.195   0.368  
 79   79  23  0.961  0.135  -0.411  
 80   80  20  0.966  0.116  -0.699  
 81   81  20  0.949  0.130  -0.524  
 82   82  23  0.953  0.093  -1.057  
 83   83  22  0.943  0.155  -0.218  
 84   84  22  0.889  0.171   0.016  
 85   85  22  0.827  0.261   1.332  
 86   86  23  0.898  0.173   0.174  
 87   87  22  0.956  0.122  -0.700  
 88   88  20  0.947  0.168  -0.048  
 89   89  23  0.964  0.146  -0.242  
 90   90  22  0.970  0.127  -0.627  
 91   91  23  0.955  0.133  -0.442  
 92   92  20  0.954  0.142  -0.362  
 93   93  20  0.957  0.163  -0.073  
 94   94  23  0.823  0.237   1.158  
 95   95   1  0.941  0.045       ?  
 96   96   1  0.860  0.094       ?  
 97   97   1  0.943  0.059       ?  
 98   98   1  0.985  0.207       ?  
 99   99   1  0.854  0.086       ?  
100  100  27  0.942  0.286       ?  
101  101   1  0.730  1.185       ?  
102  102   1  0.774  0.181       ?  
#
loop_
_pdbx_vrpt_software.ordinal
_pdbx_vrpt_software.name
_pdbx_vrpt_software.version
_pdbx_vrpt_software.success_y_or_n
1  molprobity   4.02b-467                                                             Y  
2  mogul        "1.8.4, CSD as541be (2020)"                                           Y  
3  eds          2.36                                                                  Y  
4  dcc          '"2.27  (2023-04-10)"'                                                Y  
5  xtriage      1.13                                                                  Y  
6  percentiles  "20191225.v01 (using entries in the PDB archive December 25th 2019)"  Y  
##
