data_2ROU

_pdbx_vrpt_database.id    PDB
_pdbx_vrpt_database.code  2ROU
#
_pdbx_vrpt_exptl.ordinal  1
_pdbx_vrpt_exptl.method   nmr
#
_pdbx_vrpt_summary.entry_id                    2ROU
_pdbx_vrpt_summary.PDB_deposition_date         2008-04-20
_pdbx_vrpt_summary.PDB_revision_number         3
_pdbx_vrpt_summary.PDB_revision_date           2022-03-16
_pdbx_vrpt_summary.report_creation_date        2022-03-07:03:57
_pdbx_vrpt_summary.attempted_validation_steps  mogul,buster-report,molprobity,validation-pack,coreclust,chemicalshifts,percentiles,writepdf,writexml,writecif
_pdbx_vrpt_summary.ligands_for_buster_report   Y
#
loop_
_pdbx_vrpt_entity.id
_pdbx_vrpt_entity.type
_pdbx_vrpt_entity.description
1  polymer      "DNA (5'-D(*DAP*DTP*DCP*DGP*DCP*DGP*DCP*DGP*DGP*DCP*DAP*DTP*DG)-3')"  
2  polymer      "DNA (5'-D(*DCP*DAP*DTP*DGP*DCP*DCP*DGP*DCP*DGP*DCP*DGP*DAP*DT)-3')"  
3  non-polymer  (1R)-1,2,3,4-TETRAHYDRO-BENZO[C]PHENANTHRENE-2,3,4-TRIOL  
#
loop_
_pdbx_vrpt_asym.label_asym_id
_pdbx_vrpt_asym.entity_id
A  1  
B  2  
C  3  
#
loop_
_pdbx_vrpt_percentile_list.id
_pdbx_vrpt_percentile_list.range
_pdbx_vrpt_percentile_list.exp_method
1  all  pdb    
2  nmr  x-ray  
#
_pdbx_vrpt_percentile_type.id    1
_pdbx_vrpt_percentile_type.type  all_atom_clashscore
#
loop_
_pdbx_vrpt_percentile_conditions.id
_pdbx_vrpt_percentile_conditions.percentile_list_id
_pdbx_vrpt_percentile_conditions.type_id
_pdbx_vrpt_percentile_conditions.rank
_pdbx_vrpt_percentile_conditions.number_entries_total
_pdbx_vrpt_percentile_conditions.res_high
_pdbx_vrpt_percentile_conditions.res_low
1  1  1   99.94  158937  ?     ?     
2  2  1  100.00   12864  ?     ?     
#
loop_
_pdbx_vrpt_summary_entity_geometry.ordinal
_pdbx_vrpt_summary_entity_geometry.PDB_model_num
_pdbx_vrpt_summary_entity_geometry.entity_id
_pdbx_vrpt_summary_entity_geometry.label_asym_id
_pdbx_vrpt_summary_entity_geometry.auth_asym_id
_pdbx_vrpt_summary_entity_geometry.angles_RMSZ
_pdbx_vrpt_summary_entity_geometry.bonds_RMSZ
_pdbx_vrpt_summary_entity_geometry.num_bonds_RMSZ
_pdbx_vrpt_summary_entity_geometry.num_angles_RMSZ
1  1  1  A  A  2.29  1.28   297   457  
2  1  2  B  B  2.23  1.23   293   450  
3  1  3  C  A     ?     ?     ?     ?  
#
_pdbx_vrpt_summary_geometry.ordinal                 1
_pdbx_vrpt_summary_geometry.clashscore_full_length  12.85
_pdbx_vrpt_summary_geometry.num_H_reduce            308
_pdbx_vrpt_summary_geometry.num_bonds_RMSZ          590
_pdbx_vrpt_summary_geometry.bonds_RMSZ              1.26
_pdbx_vrpt_summary_geometry.num_angles_RMSZ         907
_pdbx_vrpt_summary_geometry.angles_RMSZ             2.26
#
loop_
_pdbx_vrpt_model_instance.id
_pdbx_vrpt_model_instance.PDB_model_num
_pdbx_vrpt_model_instance.entity_id
_pdbx_vrpt_model_instance.label_asym_id
_pdbx_vrpt_model_instance.label_seq_id
_pdbx_vrpt_model_instance.label_comp_id
_pdbx_vrpt_model_instance.auth_asym_id
_pdbx_vrpt_model_instance.auth_seq_id
_pdbx_vrpt_model_instance.label_alt_id
_pdbx_vrpt_model_instance.PDB_ins_code
_pdbx_vrpt_model_instance.count_bond_outliers
_pdbx_vrpt_model_instance.count_angle_outliers
_pdbx_vrpt_model_instance.count_clashes
_pdbx_vrpt_model_instance.count_mogul_bond_outliers
_pdbx_vrpt_model_instance.count_mogul_angle_outliers
 1  1  1  A   1  DA   A   1  .  ?        ?     3     2     ?     ?  
 2  1  1  A   2  DT   A   2  .  ?        ?     3     3     ?     ?  
 3  1  1  A   3  DC   A   3  .  ?        1     1     1     ?     ?  
 4  1  1  A   4  DG   A   4  .  ?        ?     3     ?     ?     ?  
 5  1  1  A   5  DC   A   5  .  ?        ?     ?     ?     ?     ?  
 6  1  1  A   6  DG   A   6  .  ?        ?     2     1     ?     ?  
 7  1  1  A   7  DC   A   7  .  ?        ?     ?     ?     ?     ?  
 8  1  1  A   8  DG   A   8  .  ?        ?     4     ?     ?     ?  
 9  1  1  A   9  DG   A   9  .  ?        ?     2     1     ?     ?  
10  1  1  A  10  DC   A  10  .  ?        ?     ?     1     ?     ?  
11  1  1  A  11  DA   A  11  .  ?        ?     3     1     ?     ?  
12  1  1  A  12  DT   A  12  .  ?        ?     3     1     ?     ?  
13  1  1  A  13  DG   A  13  .  ?        ?     3     ?     ?     ?  
14  1  2  B   1  DC   B  14  .  ?        ?     ?     ?     ?     ?  
15  1  2  B   2  DA   B  15  .  ?        ?     2     1     ?     ?  
16  1  2  B   3  DT   B  16  .  ?        ?     3     1     ?     ?  
17  1  2  B   4  DG   B  17  .  ?        ?     3     ?     ?     ?  
18  1  2  B   5  DC   B  18  .  ?        ?     ?     ?     ?     ?  
19  1  2  B   6  DC   B  19  .  ?        ?     1     ?     ?     ?  
20  1  2  B   7  DG   B  20  .  ?        ?     3     ?     ?     ?  
21  1  2  B   8  DC   B  21  .  ?        ?     1     1     ?     ?  
22  1  2  B   9  DG   B  22  .  ?        ?     3     1     ?     ?  
23  1  2  B  10  DC   B  23  .  ?        ?     ?     ?     ?     ?  
24  1  2  B  11  DG   B  24  .  ?        ?     4     ?     ?     ?  
25  1  2  B  12  DA   B  25  .  ?        ?     2     ?     ?     ?  
26  1  2  B  13  DT   B  26  .  ?        ?     3     ?     ?     ?  
27  1  3  C   .  BPJ  A  27  .  ?        ?     ?     7     2     3  
#
loop_
_pdbx_vrpt_model_instance_geometry.ordinal
_pdbx_vrpt_model_instance_geometry.instance_id
_pdbx_vrpt_model_instance_geometry.num_H_reduce
_pdbx_vrpt_model_instance_geometry.num_bonds_RMSZ
_pdbx_vrpt_model_instance_geometry.bonds_RMSZ
_pdbx_vrpt_model_instance_geometry.num_angles_RMSZ
_pdbx_vrpt_model_instance_geometry.angles_RMSZ
_pdbx_vrpt_model_instance_geometry.program_for_bond_angle_geometry
 1   1  12  21  1.08  33  2.63  molprobity  
 2   2  12  22  1.17  34  2.42  molprobity  
 3   3  11  21  1.63  32  1.86  molprobity  
 4   4  11  25  1.23  39  2.36  molprobity  
 5   5  11  21  1.02  32  1.66  molprobity  
 6   6  10  25  1.88  39  2.53  molprobity  
 7   7  11  21  1.06  32  1.68  molprobity  
 8   8  11  25  1.16  39  2.41  molprobity  
 9   9  11  25  1.20  39  2.34  molprobity  
10  10  11  21  1.22  32  1.73  molprobity  
11  11  11  24  1.20  37  2.48  molprobity  
12  12  12  22  1.25  34  2.62  molprobity  
13  13  12  24  1.20  35  2.49  molprobity  
14  14  12  18  0.92  28  1.66  molprobity  
15  15  11  24  1.24  37  2.40  molprobity  
16  16  12  22  1.44  34  2.37  molprobity  
17  17  11  25  1.28  39  2.27  molprobity  
18  18  11  21  1.11  32  1.65  molprobity  
19  19  11  21  1.36  32  1.85  molprobity  
20  20  11  25  1.39  39  2.46  molprobity  
21  21  11  21  1.20  32  2.11  molprobity  
22  22  11  25  1.16  39  2.38  molprobity  
23  23  11  21  1.05  32  1.70  molprobity  
24  24  11  25  1.21  39  2.42  molprobity  
25  25  11  24  1.35  37  2.38  molprobity  
26  26  13  21  1.08  30  2.80  molprobity  
27  27  15  24  1.36  33  0.86  mogul       
#
loop_
_pdbx_vrpt_instance_clashes.ordinal
_pdbx_vrpt_instance_clashes.instance_id
_pdbx_vrpt_instance_clashes.label_atom_id
_pdbx_vrpt_instance_clashes.cid
_pdbx_vrpt_instance_clashes.clashmag
_pdbx_vrpt_instance_clashes.dist
 1   1  C2       1  0.56  2.94  
 2   1  C2       2  0.52  2.78  
 3   2  C2       3  0.61  2.88  
 4   2  C4       1  0.56  2.94  
 5   2  N3       2  0.52  2.78  
 6   3  C5       3  0.61  2.88  
 7   6  N2       4  0.50  2.75  
 8   9  C2       5  0.43  3.07  
 9  10  C2       5  0.43  3.07  
10  11  "H2''"   6  0.52  2.04  
11  12  "O5'"    6  0.52  2.04  
12  15  "H2''"   7  0.60  1.97  
13  16  "O5'"    7  0.60  1.97  
14  21  "H2''"   8  0.70  1.85  
15  22  OP2      8  0.70  1.85  
16  27  C1       9  0.52  2.34  
17  27  C1      10  0.46  2.93  
18  27  H12      9  0.52  2.34  
19  27  H12     11  0.52  1.82  
20  27  H11A    11  0.52  1.82  
21  27  C12      4  0.50  2.75  
22  27  C12     10  0.46  2.93  
#
_pdbx_vrpt_instance_intra_bond_outliers.ordinal      1
_pdbx_vrpt_instance_intra_bond_outliers.instance_id  3
_pdbx_vrpt_instance_intra_bond_outliers.atom_1       N1
_pdbx_vrpt_instance_intra_bond_outliers.atom_2       C6
_pdbx_vrpt_instance_intra_bond_outliers.obs          1.335
_pdbx_vrpt_instance_intra_bond_outliers.mean         1.367
_pdbx_vrpt_instance_intra_bond_outliers.stdev        0.006
_pdbx_vrpt_instance_intra_bond_outliers.Z            -5.41
#
loop_
_pdbx_vrpt_instance_intra_angle_outliers.ordinal
_pdbx_vrpt_instance_intra_angle_outliers.instance_id
_pdbx_vrpt_instance_intra_angle_outliers.atom_1
_pdbx_vrpt_instance_intra_angle_outliers.atom_2
_pdbx_vrpt_instance_intra_angle_outliers.atom_3
_pdbx_vrpt_instance_intra_angle_outliers.obs
_pdbx_vrpt_instance_intra_angle_outliers.mean
_pdbx_vrpt_instance_intra_angle_outliers.stdev
_pdbx_vrpt_instance_intra_angle_outliers.Z
 1   1  C8     N9     C4  103.436  105.800  0.400  -5.91  
 2   1  N7     C8     N9  117.603  113.800  0.500   7.61  
 3   1  "O4'"  "C1'"  N9  111.845  108.000  0.700   5.49  
 4   2  C4     C5     C6  121.597  118.000  0.600   6.00  
 5   2  C6     C5     C7  118.596  122.900  0.600  -7.17  
 6   2  "O4'"  "C1'"  N1  112.251  108.000  0.700   6.07  
 7   3  C6     N1     C2  122.569  120.300  0.400   5.67  
 8   4  C5     N7     C8  101.681  104.300  0.500  -5.24  
 9   4  C8     N9     C4  103.815  106.400  0.400  -6.46  
10   4  N7     C8     N9  117.659  113.100  0.500   9.12  
11   6  C8     N9     C4  103.967  106.400  0.400  -6.08  
12   6  N7     C8     N9  118.083  113.100  0.500   9.97  
13   8  C5     N7     C8  101.764  104.300  0.500  -5.07  
14   8  C8     N9     C4  103.819  106.400  0.400  -6.45  
15   8  N7     C8     N9  117.424  113.100  0.500   8.65  
16   8  "O4'"  "C1'"  N9  111.805  108.000  0.700   5.43  
17   9  C8     N9     C4  103.764  106.400  0.400  -6.59  
18   9  N7     C8     N9  117.543  113.100  0.500   8.89  
19  11  C8     N9     C4  103.301  105.800  0.400  -6.25  
20  11  N7     C8     N9  117.551  113.800  0.500   7.50  
21  11  "O4'"  "C1'"  N9  111.663  108.000  0.700   5.23  
22  12  C4     C5     C6  121.400  118.000  0.600   5.67  
23  12  C6     C5     C7  118.131  122.900  0.600  -7.95  
24  12  "O4'"  "C1'"  N1  113.639  108.000  0.700   8.06  
25  13  C5     N7     C8  101.753  104.300  0.500  -5.09  
26  13  C8     N9     C4  103.709  106.400  0.400  -6.73  
27  13  N7     C8     N9  117.655  113.100  0.500   9.11  
28  15  C8     N9     C4  103.518  105.800  0.400  -5.70  
29  15  N7     C8     N9  117.690  113.800  0.500   7.78  
30  16  C4     C5     C6  121.028  118.000  0.600   5.05  
31  16  C6     C5     C7  118.482  122.900  0.600  -7.36  
32  16  "O4'"  "C1'"  N1  112.459  108.000  0.700   6.37  
33  17  C5     N7     C8  101.689  104.300  0.500  -5.22  
34  17  C8     N9     C4  103.990  106.400  0.400  -6.03  
35  17  N7     C8     N9  117.505  113.100  0.500   8.81  
36  19  "O4'"  "C1'"  N1  111.593  108.000  0.700   5.13  
37  20  C5     N7     C8  101.592  104.300  0.500  -5.42  
38  20  C8     N9     C4  103.810  106.400  0.400  -6.48  
39  20  N7     C8     N9  117.666  113.100  0.500   9.13  
40  21  "O4'"  "C1'"  N1  113.503  108.000  0.700   7.86  
41  22  C5     N7     C8  101.794  104.300  0.500  -5.01  
42  22  C8     N9     C4  103.830  106.400  0.400  -6.42  
43  22  N7     C8     N9  117.523  113.100  0.500   8.85  
44  24  C5     N7     C8  101.732  104.300  0.500  -5.13  
45  24  C8     N9     C4  103.741  106.400  0.400  -6.65  
46  24  N7     C8     N9  117.529  113.100  0.500   8.86  
47  24  "O4'"  "C1'"  N9  111.538  108.000  0.700   5.05  
48  25  C8     N9     C4  103.477  105.800  0.400  -5.81  
49  25  N7     C8     N9  117.731  113.800  0.500   7.86  
50  26  C4     C5     C6  121.557  118.000  0.600   5.93  
51  26  C6     C5     C7  117.323  122.900  0.600  -9.30  
52  26  "O4'"  "C1'"  N1  112.162  108.000  0.700   5.95  
#
loop_
_pdbx_vrpt_instance_mogul_bond_outliers.ordinal
_pdbx_vrpt_instance_mogul_bond_outliers.instance_id
_pdbx_vrpt_instance_mogul_bond_outliers.atom_1
_pdbx_vrpt_instance_mogul_bond_outliers.atom_2
_pdbx_vrpt_instance_mogul_bond_outliers.obsval
_pdbx_vrpt_instance_mogul_bond_outliers.mean
_pdbx_vrpt_instance_mogul_bond_outliers.numobs
_pdbx_vrpt_instance_mogul_bond_outliers.stdev
_pdbx_vrpt_instance_mogul_bond_outliers.Zscore
_pdbx_vrpt_instance_mogul_bond_outliers.mindiff
1  27  C11  C12  1.41  1.36  10000  0.02  2.16  0.00  
2  27  C13  C14  1.44  1.37     25  0.02  4.29  0.03  
#
loop_
_pdbx_vrpt_instance_mogul_angle_outliers.ordinal
_pdbx_vrpt_instance_mogul_angle_outliers.instance_id
_pdbx_vrpt_instance_mogul_angle_outliers.atom_1
_pdbx_vrpt_instance_mogul_angle_outliers.atom_2
_pdbx_vrpt_instance_mogul_angle_outliers.atom_3
_pdbx_vrpt_instance_mogul_angle_outliers.obsval
_pdbx_vrpt_instance_mogul_angle_outliers.mean
_pdbx_vrpt_instance_mogul_angle_outliers.numobs
_pdbx_vrpt_instance_mogul_angle_outliers.stdev
_pdbx_vrpt_instance_mogul_angle_outliers.Zscore
_pdbx_vrpt_instance_mogul_angle_outliers.mindiff
1  27  C5  C14  C4  116.35  120.87    207  2.19  -2.07  0.80  
2  27  C7  C15  C6  118.47  123.19  10000  2.34  -2.02  0.00  
3  27  C9  C18  C8  118.20  123.19  10000  2.34  -2.13  0.01  
#
loop_
_pdbx_vrpt_software.ordinal
_pdbx_vrpt_software.name
_pdbx_vrpt_software.version
_pdbx_vrpt_software.success_y_or_n
1  molprobity   4.02b-467                                                             Y  
2  mogul        "1.8.5 (274361), CSD as541be (2020)"                                  Y  
3  percentiles  "20191225.v01 (using entries in the PDB archive December 25th 2019)"  N  
##
