data_1ROP

_pdbx_vrpt_database.id    PDB
_pdbx_vrpt_database.code  1ROP
#
_pdbx_vrpt_exptl.ordinal  1
_pdbx_vrpt_exptl.method   x-ray
#
_pdbx_vrpt_summary.entry_id                    1ROP
_pdbx_vrpt_summary.PDB_deposition_date         1991-04-02
_pdbx_vrpt_summary.PDB_revision_number         4
_pdbx_vrpt_summary.PDB_revision_date           2024-02-14
_pdbx_vrpt_summary.report_creation_date        2024-02-04:21:32
_pdbx_vrpt_summary.attempted_validation_steps  molprobity,validation-pack,percentiles,writexml,writecif,writepdf
_pdbx_vrpt_summary.ligands_for_buster_report   N
#
loop_
_pdbx_vrpt_entity.id
_pdbx_vrpt_entity.type
_pdbx_vrpt_entity.description
1  polymer  "ROP PROTEIN"  
2  water    water  
#
loop_
_pdbx_vrpt_asym.label_asym_id
_pdbx_vrpt_asym.entity_id
A  1  
B  2  
#
loop_
_pdbx_vrpt_percentile_list.id
_pdbx_vrpt_percentile_list.range
_pdbx_vrpt_percentile_list.exp_method
1  all  x-ray  
2  1.7  x-ray  
#
loop_
_pdbx_vrpt_percentile_type.id
_pdbx_vrpt_percentile_type.type
1  all_atom_clashscore           
2  Ramachandran_outlier_percent  
3  rotamer_outliers_percent      
#
loop_
_pdbx_vrpt_percentile_conditions.id
_pdbx_vrpt_percentile_conditions.percentile_list_id
_pdbx_vrpt_percentile_conditions.type_id
_pdbx_vrpt_percentile_conditions.rank
_pdbx_vrpt_percentile_conditions.number_entries_total
_pdbx_vrpt_percentile_conditions.res_high
_pdbx_vrpt_percentile_conditions.res_low
1  1  1   59.86  141614     ?     ?  
2  2  1   48.65    4695  1.70  1.70  
3  1  2  100.00  138981     ?     ?  
4  2  2  100.00    4610  1.70  1.70  
5  1  3   28.77  138945     ?     ?  
6  2  3   11.30    4610  1.70  1.70  
#
loop_
_pdbx_vrpt_percentile_entity_view.ordinal
_pdbx_vrpt_percentile_entity_view.conditions_id
_pdbx_vrpt_percentile_entity_view.type_id
_pdbx_vrpt_percentile_entity_view.label_asym_id
_pdbx_vrpt_percentile_entity_view.PDB_model_num
_pdbx_vrpt_percentile_entity_view.entity_id
_pdbx_vrpt_percentile_entity_view.auth_asym_id
_pdbx_vrpt_percentile_entity_view.rank
1  3  2  A  1  1  A  100.00  
2  4  2  A  1  1  A  100.00  
3  5  3  A  1  1  A   28.77  
4  6  3  A  1  1  A   11.30  
#
_pdbx_vrpt_summary_entity_geometry.ordinal          1
_pdbx_vrpt_summary_entity_geometry.PDB_model_num    1
_pdbx_vrpt_summary_entity_geometry.entity_id        1
_pdbx_vrpt_summary_entity_geometry.label_asym_id    A
_pdbx_vrpt_summary_entity_geometry.auth_asym_id     A
_pdbx_vrpt_summary_entity_geometry.angles_RMSZ      2.25
_pdbx_vrpt_summary_entity_geometry.bonds_RMSZ       1.65
_pdbx_vrpt_summary_entity_geometry.num_bonds_RMSZ   451
_pdbx_vrpt_summary_entity_geometry.num_angles_RMSZ  607
#
_pdbx_vrpt_summary_geometry.ordinal                        1
_pdbx_vrpt_summary_geometry.percent_ramachandran_outliers  0.00
_pdbx_vrpt_summary_geometry.percent_rotamer_outliers       4.26
_pdbx_vrpt_summary_geometry.clashscore                     4.58
_pdbx_vrpt_summary_geometry.num_H_reduce                   427
_pdbx_vrpt_summary_geometry.num_bonds_RMSZ                 451
_pdbx_vrpt_summary_geometry.bonds_RMSZ                     1.65
_pdbx_vrpt_summary_geometry.num_angles_RMSZ                607
_pdbx_vrpt_summary_geometry.angles_RMSZ                    2.25
#
_pdbx_vrpt_summary_diffraction.exp_method           x-ray
_pdbx_vrpt_summary_diffraction.ordinal              1
_pdbx_vrpt_summary_diffraction.PDB_resolution_high  1.70
_pdbx_vrpt_summary_diffraction.PDB_resolution_low   5.00
_pdbx_vrpt_summary_diffraction.PDB_R                0.18
#
loop_
_pdbx_vrpt_model_instance.id
_pdbx_vrpt_model_instance.PDB_model_num
_pdbx_vrpt_model_instance.entity_id
_pdbx_vrpt_model_instance.label_asym_id
_pdbx_vrpt_model_instance.label_seq_id
_pdbx_vrpt_model_instance.label_comp_id
_pdbx_vrpt_model_instance.auth_asym_id
_pdbx_vrpt_model_instance.auth_seq_id
_pdbx_vrpt_model_instance.label_alt_id
_pdbx_vrpt_model_instance.PDB_ins_code
_pdbx_vrpt_model_instance.count_bond_outliers
_pdbx_vrpt_model_instance.count_angle_outliers
_pdbx_vrpt_model_instance.count_clashes
  1  1  1  A   1  MET  A    1  .  ?        ?     ?     1  
  2  1  1  A   2  THR  A    2  .  ?        ?     ?     ?  
  3  1  1  A   3  LYS  A    3  .  ?        ?     ?     ?  
  4  1  1  A   4  GLN  A    4  .  ?        ?     ?     ?  
  5  1  1  A   5  GLU  A    5  .  ?        1     ?     1  
  6  1  1  A   6  LYS  A    6  .  ?        ?     ?     ?  
  7  1  1  A   7  THR  A    7  .  ?        ?     ?     ?  
  8  1  1  A   8  ALA  A    8  .  ?        ?     ?     ?  
  9  1  1  A   9  LEU  A    9  .  ?        ?     ?     1  
 10  1  1  A  10  ASN  A   10  .  ?        ?     ?     ?  
 11  1  1  A  11  MET  A   11  .  ?        ?     ?     ?  
 12  1  1  A  12  ALA  A   12  .  ?        ?     1     ?  
 13  1  1  A  13  ARG  A   13  .  ?        ?     ?     ?  
 14  1  1  A  14  PHE  A   14  .  ?        ?     ?     ?  
 15  1  1  A  15  ILE  A   15  .  ?        ?     ?     ?  
 16  1  1  A  16  ARG  A   16  .  ?        ?     3     ?  
 17  1  1  A  17  SER  A   17  .  ?        ?     ?     ?  
 18  1  1  A  18  GLN  A   18  .  ?        ?     ?     ?  
 19  1  1  A  19  THR  A   19  .  ?        ?     2     ?  
 20  1  1  A  20  LEU  A   20  .  ?        1     ?     ?  
 21  1  1  A  21  THR  A   21  .  ?        ?     ?     ?  
 22  1  1  A  22  LEU  A   22  .  ?        ?     ?     ?  
 23  1  1  A  23  LEU  A   23  .  ?        ?     1     ?  
 24  1  1  A  24  GLU  A   24  .  ?        ?     ?     ?  
 25  1  1  A  25  LYS  A   25  .  ?        ?     ?     ?  
 26  1  1  A  26  LEU  A   26  .  ?        ?     ?     ?  
 27  1  1  A  27  ASN  A   27  .  ?        ?     ?     ?  
 28  1  1  A  28  GLU  A   28  .  ?        ?     ?     ?  
 29  1  1  A  29  LEU  A   29  .  ?        ?     ?     ?  
 30  1  1  A  30  ASP  A   30  .  ?        ?     ?     ?  
 31  1  1  A  31  ALA  A   31  .  ?        ?     ?     1  
 32  1  1  A  32  ASP  A   32  .  ?        ?     1     ?  
 33  1  1  A  33  GLU  A   33  .  ?        ?     ?     ?  
 34  1  1  A  34  GLN  A   34  .  ?        ?     ?     1  
 35  1  1  A  35  ALA  A   35  .  ?        ?     ?     ?  
 36  1  1  A  36  ASP  A   36  .  ?        ?     1     ?  
 37  1  1  A  37  ILE  A   37  .  ?        ?     ?     ?  
 38  1  1  A  38  CYS  A   38  .  ?        ?     ?     ?  
 39  1  1  A  39  GLU  A   39  .  ?        ?     1     ?  
 40  1  1  A  40  SER  A   40  .  ?        ?     ?     ?  
 41  1  1  A  41  LEU  A   41  .  ?        ?     ?     ?  
 42  1  1  A  42  HIS  A   42  .  ?        ?     1     ?  
 43  1  1  A  43  ASP  A   43  .  ?        ?     ?     ?  
 44  1  1  A  44  HIS  A   44  .  ?        ?     ?     ?  
 45  1  1  A  45  ALA  A   45  .  ?        ?     ?     ?  
 46  1  1  A  46  ASP  A   46  .  ?        ?     ?     ?  
 47  1  1  A  47  GLU  A   47  .  ?        ?     ?     ?  
 48  1  1  A  48  LEU  A   48  .  ?        ?     ?     ?  
 49  1  1  A  49  TYR  A   49  .  ?        ?     1     ?  
 50  1  1  A  50  ARG  A   50  .  ?        ?     2     1  
 51  1  1  A  51  SER  A   51  .  ?        ?     ?     ?  
 52  1  1  A  52  CYS  A   52  .  ?        ?     ?     ?  
 53  1  1  A  53  LEU  A   53  .  ?        ?     ?     1  
 54  1  1  A  54  ALA  A   54  .  ?        ?     ?     ?  
 55  1  1  A  55  ARG  A   55  .  ?        ?     1     ?  
 56  1  1  A  56  PHE  A   56  .  ?        ?     ?     ?  
 57  1  2  B   .  HOH  A   64  .  ?        ?     ?     ?  
 58  1  2  B   .  HOH  A   65  .  ?        ?     ?     ?  
 59  1  2  B   .  HOH  A   66  .  ?        ?     ?     ?  
 60  1  2  B   .  HOH  A   67  .  ?        ?     ?     ?  
 61  1  2  B   .  HOH  A   68  .  ?        ?     ?     ?  
 62  1  2  B   .  HOH  A   69  .  ?        ?     ?     ?  
 63  1  2  B   .  HOH  A   70  .  ?        ?     ?     ?  
 64  1  2  B   .  HOH  A   71  .  ?        ?     ?     ?  
 65  1  2  B   .  HOH  A   72  .  ?        ?     ?     ?  
 66  1  2  B   .  HOH  A   73  .  ?        ?     ?     ?  
 67  1  2  B   .  HOH  A   74  .  ?        ?     ?     ?  
 68  1  2  B   .  HOH  A   75  .  ?        ?     ?     ?  
 69  1  2  B   .  HOH  A   76  .  ?        ?     ?     ?  
 70  1  2  B   .  HOH  A   77  .  ?        ?     ?     ?  
 71  1  2  B   .  HOH  A   78  .  ?        ?     ?     ?  
 72  1  2  B   .  HOH  A   79  .  ?        ?     ?     ?  
 73  1  2  B   .  HOH  A   80  .  ?        ?     ?     ?  
 74  1  2  B   .  HOH  A   81  .  ?        ?     ?     ?  
 75  1  2  B   .  HOH  A   82  .  ?        ?     ?     ?  
 76  1  2  B   .  HOH  A   83  .  ?        ?     ?     ?  
 77  1  2  B   .  HOH  A   84  .  ?        ?     ?     ?  
 78  1  2  B   .  HOH  A   85  .  ?        ?     ?     ?  
 79  1  2  B   .  HOH  A   86  .  ?        ?     ?     ?  
 80  1  2  B   .  HOH  A   87  .  ?        ?     ?     ?  
 81  1  2  B   .  HOH  A   88  .  ?        ?     ?     ?  
 82  1  2  B   .  HOH  A   89  .  ?        ?     ?     ?  
 83  1  2  B   .  HOH  A   90  .  ?        ?     ?     1  
 84  1  2  B   .  HOH  A   91  .  ?        ?     ?     ?  
 85  1  2  B   .  HOH  A   92  .  ?        ?     ?     ?  
 86  1  2  B   .  HOH  A   93  .  ?        ?     ?     ?  
 87  1  2  B   .  HOH  A   94  .  ?        ?     ?     ?  
 88  1  2  B   .  HOH  A   95  .  ?        ?     ?     ?  
 89  1  2  B   .  HOH  A   96  .  ?        ?     ?     ?  
 90  1  2  B   .  HOH  A   97  .  ?        ?     ?     ?  
 91  1  2  B   .  HOH  A   98  .  ?        ?     ?     ?  
 92  1  2  B   .  HOH  A   99  .  ?        ?     ?     ?  
 93  1  2  B   .  HOH  A  100  .  ?        ?     ?     ?  
 94  1  2  B   .  HOH  A  101  .  ?        ?     ?     ?  
 95  1  2  B   .  HOH  A  102  .  ?        ?     ?     ?  
 96  1  2  B   .  HOH  A  103  .  ?        ?     ?     ?  
 97  1  2  B   .  HOH  A  104  .  ?        ?     ?     ?  
 98  1  2  B   .  HOH  A  105  .  ?        ?     ?     ?  
 99  1  2  B   .  HOH  A  106  .  ?        ?     ?     ?  
100  1  2  B   .  HOH  A  107  .  ?        ?     ?     ?  
101  1  2  B   .  HOH  A  108  .  ?        ?     ?     ?  
102  1  2  B   .  HOH  A  109  .  ?        ?     ?     ?  
103  1  2  B   .  HOH  A  110  .  ?        ?     ?     ?  
104  1  2  B   .  HOH  A  111  .  ?        ?     ?     ?  
#
loop_
_pdbx_vrpt_model_instance_geometry.ordinal
_pdbx_vrpt_model_instance_geometry.instance_id
_pdbx_vrpt_model_instance_geometry.rotamer_class
_pdbx_vrpt_model_instance_geometry.phi
_pdbx_vrpt_model_instance_geometry.psi
_pdbx_vrpt_model_instance_geometry.ramachandran_class
_pdbx_vrpt_model_instance_geometry.flippable_sidechain
_pdbx_vrpt_model_instance_geometry.num_H_reduce
_pdbx_vrpt_model_instance_geometry.num_bonds_RMSZ
_pdbx_vrpt_model_instance_geometry.bonds_RMSZ
_pdbx_vrpt_model_instance_geometry.num_angles_RMSZ
_pdbx_vrpt_model_instance_geometry.angles_RMSZ
_pdbx_vrpt_model_instance_geometry.program_for_bond_angle_geometry
 1   1  ttm          ?      ?  ?           ?  11   8  0.94  10  1.81  molprobity  
 2   2  p        -77.9  170.6  Favored     ?   7   7  1.96  10  1.20  molprobity  
 3   3  ?        -68.4  -36.5  Favored     ?   6   7  1.80   9  1.64  molprobity  
 4   4  mt-30    -65.7  -39.0  Favored     ?   8   9  1.48  12  2.23  molprobity  
 5   5  mt-10    -68.6  -35.4  Favored     ?   6   9  2.72  12  2.20  molprobity  
 6   6  ?        -65.1  -46.7  Favored     ?   2   5  1.74   7  1.67  molprobity  
 7   7  m        -51.8  -49.5  Favored     ?   7   7  1.65  10  1.73  molprobity  
 8   8  ?        -61.2  -43.6  Favored     ?   5   5  1.07   7  1.50  molprobity  
 9   9  tp       -64.3  -48.0  Favored     ?  11   8  1.50  11  1.18  molprobity  
10  10  m-20     -58.8  -41.1  Favored     ?   6   8  1.81  11  1.16  molprobity  
11  11  ?        -63.5  -43.0  Favored     ?   6   7  1.55   9  1.26  molprobity  
12  12  ?        -64.1  -41.8  Favored     ?   5   5  1.90   7  2.54  molprobity  
13  13  ttm180   -64.5  -41.8  Favored     ?  13  11  2.16  14  1.50  molprobity  
14  14  t80      -59.4  -49.5  Favored     ?   9  12  0.90  16  1.00  molprobity  
15  15  mt       -59.1  -44.7  Favored     ?  11   8  1.11  11  1.81  molprobity  
16  16  ttt-85   -57.8  -46.9  Favored     ?  13  11  2.78  14  8.08  molprobity  
17  17  m        -63.2  -45.1  Favored     ?   5   6  2.24   8  1.19  molprobity  
18  18  mm100    -59.6  -37.3  Favored     ?   8   9  0.45  12  1.10  molprobity  
19  19  p        -72.3  -29.6  Favored     ?   7   7  1.88  10  4.00  molprobity  
20  20  tp       -74.3  -40.0  Favored     ?  11   8  2.65  11  1.65  molprobity  
21  21  m        -59.1  -40.0  Favored     ?   7   7  1.14  10  1.30  molprobity  
22  22  tp       -71.2  -36.1  Favored     ?  11   8  1.81  11  1.46  molprobity  
23  23  tp       -57.0  -43.5  Favored     ?  11   8  1.46  11  3.24  molprobity  
24  24  mm-40    -70.6  -38.1  Favored     ?   6   9  2.35  12  1.48  molprobity  
25  25  mttm     -54.5  -49.4  Favored     ?  13   9  1.00  11  1.19  molprobity  
26  26  mt       -66.3  -31.8  Favored     ?  11   8  0.94  11  2.24  molprobity  
27  27  m-20     -69.1  -39.6  Favored     ?   6   8  2.39  11  1.30  molprobity  
28  28  mt-10    -62.5  -30.7  Favored     ?   6   9  1.65  12  1.71  molprobity  
29  29  mt       -89.8   -0.7  Favored     ?  11   8  1.06  11  1.03  molprobity  
30  30  OUTLIER   57.3   37.6  Favored     ?   4   8  1.07  11  1.92  molprobity  
31  31  ?        -94.2   89.1  Favored     ?   5   5  1.50   7  2.06  molprobity  
32  32  p-10     -59.2  -54.8  Favored     ?   4   8  1.01  11  3.80  molprobity  
33  33  tt0      -66.9  -37.8  Favored     ?   6   9  1.80  12  1.83  molprobity  
34  34  mp0      -69.0  -40.7  Favored     1   8   9  1.31  12  1.19  molprobity  
35  35  ?        -63.4  -35.8  Favored     ?   5   5  1.30   7  1.04  molprobity  
36  36  m-20     -65.3  -45.3  Favored     ?   4   8  1.58  11  2.55  molprobity  
37  37  mt       -59.9  -43.1  Favored     ?  11   8  1.96  11  1.36  molprobity  
38  38  t        -65.6  -36.8  Favored     ?   5   6  1.00   8  1.33  molprobity  
39  39  tt0      -60.4  -42.7  Favored     ?   6   9  2.16  12  2.86  molprobity  
40  40  t        -65.7  -40.4  Favored     ?   5   6  1.75   8  1.36  molprobity  
41  41  tp       -59.0  -47.9  Favored     ?  11   8  1.22  11  1.97  molprobity  
42  42  t60      -60.7  -40.5  Favored     ?   7  11  1.72  15  2.28  molprobity  
43  43  m-20     -61.5  -36.5  Favored     ?   4   8  1.24  11  2.35  molprobity  
44  44  t-160    -73.5  -40.3  Favored     ?   7  11  2.08  15  1.32  molprobity  
45  45  ?        -57.6  -40.1  Favored     ?   5   5  1.52   7  2.41  molprobity  
46  46  t70      -67.9  -37.4  Favored     ?   4   8  0.64  11  1.51  molprobity  
47  47  mt-10    -61.1  -45.4  Favored     ?   6   9  1.75  12  1.54  molprobity  
48  48  tp       -63.0  -44.3  Favored     ?  11   8  1.71  11  1.65  molprobity  
49  49  t80      -58.9  -46.3  Favored     ?   9  13  0.78  18  2.41  molprobity  
50  50  OUTLIER  -66.1  -36.0  Favored     ?  13  11  1.35  14  2.87  molprobity  
51  51  t        -64.3  -44.0  Favored     ?   5   6  1.95   8  1.01  molprobity  
52  52  m        -61.5  -42.6  Favored     ?   5   6  0.68   8  0.57  molprobity  
53  53  mt       -61.5  -41.4  Favored     ?  11   8  1.22  11  1.63  molprobity  
54  54  ?        -69.8  -39.1  Favored     ?   5   5  0.68   7  0.83  molprobity  
55  55  ttt180   -76.2  -47.4  Favored     ?  13  11  1.59  14  1.88  molprobity  
56  56  m-85         ?      ?  ?           ?   9  11  1.66  13  1.54  molprobity  
#
loop_
_pdbx_vrpt_instance_clashes.ordinal
_pdbx_vrpt_instance_clashes.instance_id
_pdbx_vrpt_instance_clashes.label_atom_id
_pdbx_vrpt_instance_clashes.cid
_pdbx_vrpt_instance_clashes.clashmag
_pdbx_vrpt_instance_clashes.dist
1   1  HG2   1  0.42  2.02  
2   5  HB3   1  0.42  2.02  
3   9  HD11  2  0.50  1.94  
4  31  HB1   3  0.50  1.76  
5  34  HE21  3  0.50  1.76  
6  50  NH1   4  0.65  2.29  
7  53  HG    2  0.50  1.94  
8  83  O     4  0.65  2.29  
#
loop_
_pdbx_vrpt_instance_intra_bond_outliers.ordinal
_pdbx_vrpt_instance_intra_bond_outliers.instance_id
_pdbx_vrpt_instance_intra_bond_outliers.atom_1
_pdbx_vrpt_instance_intra_bond_outliers.atom_2
_pdbx_vrpt_instance_intra_bond_outliers.obs
_pdbx_vrpt_instance_intra_bond_outliers.mean
_pdbx_vrpt_instance_intra_bond_outliers.stdev
_pdbx_vrpt_instance_intra_bond_outliers.Z
1   5  CD  OE1  1.181  1.252  0.011  -6.50  
2  20  N   CA   1.583  1.459  0.020   6.21  
#
loop_
_pdbx_vrpt_instance_intra_angle_outliers.ordinal
_pdbx_vrpt_instance_intra_angle_outliers.instance_id
_pdbx_vrpt_instance_intra_angle_outliers.atom_1
_pdbx_vrpt_instance_intra_angle_outliers.atom_2
_pdbx_vrpt_instance_intra_angle_outliers.atom_3
_pdbx_vrpt_instance_intra_angle_outliers.obs
_pdbx_vrpt_instance_intra_angle_outliers.mean
_pdbx_vrpt_instance_intra_angle_outliers.stdev
_pdbx_vrpt_instance_intra_angle_outliers.Z
_pdbx_vrpt_instance_intra_angle_outliers.link
 1  12  O   C   N    130.738  122.700  1.600    5.02  Y     
 2  16  CD  NE  CZ   112.310  123.600  1.400   -8.06  ?     
 3  16  NE  CZ  NH1  131.470  120.300  0.500   22.34  ?     
 4  16  NE  CZ  NH2  111.590  120.300  0.500  -17.42  ?     
 5  19  O   C   N    137.994  122.700  1.600    9.56  Y     
 6  19  CA  C   O    107.882  120.100  2.100   -5.82  ?     
 7  23  O   C   N    134.806  122.700  1.600    7.57  Y     
 8  32  CB  CG  OD1  127.223  118.300  0.900    9.91  ?     
 9  36  CB  CG  OD2  113.214  118.300  0.900   -5.65  ?     
10  39  CG  CD  OE2  108.148  118.300  2.000   -5.08  ?     
11  42  CA  CB  CG   104.978  113.600  1.700   -5.07  ?     
12  49  CB  CG  CD2  116.334  121.000  0.600   -7.78  ?     
13  50  CD  NE  CZ   131.035  123.600  1.400    5.31  ?     
14  50  NE  CZ  NH1  123.764  120.300  0.500    6.93  ?     
15  55  NE  CZ  NH2  117.750  120.300  0.500   -5.10  ?     
#
loop_
_pdbx_vrpt_software.ordinal
_pdbx_vrpt_software.name
_pdbx_vrpt_software.version
_pdbx_vrpt_software.success_y_or_n
1  molprobity   4.02b-467                                                             Y  
2  percentiles  "20191225.v01 (using entries in the PDB archive December 25th 2019)"  Y  
##
